Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_02850 and MPMX19_02851 are separated by 34 nucleotides MPMX19_02851 and MPMX19_02852 are separated by 81 nucleotides
MPMX19_02850: MPMX19_02850 - Glyceraldehyde-3-phosphate dehydrogenase 1, at 92,886 to 93,908
_02850
MPMX19_02851: MPMX19_02851 - hypothetical protein, at 93,943 to 94,188
_02851
MPMX19_02852: MPMX19_02852 - hypothetical protein, at 94,270 to 95,355
_02852
Position (kb)
93
94
95 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 92.950 kb on - strand at 92.950 kb on - strand at 93.031 kb on - strand, within MPMX19_02850 at 93.031 kb on - strand, within MPMX19_02850 at 93.730 kb on - strand, within MPMX19_02850 at 93.730 kb on - strand, within MPMX19_02850 at 93.840 kb on + strand at 93.840 kb on + strand at 93.840 kb on + strand at 93.840 kb on + strand at 93.840 kb on + strand at 93.840 kb on + strand at 93.840 kb on + strand at 93.841 kb on - strand at 93.841 kb on - strand at 93.841 kb on - strand at 93.841 kb on - strand at 93.906 kb on + strand at 93.906 kb on + strand at 93.906 kb on + strand at 93.906 kb on + strand at 93.906 kb on + strand at 93.906 kb on + strand at 93.907 kb on - strand at 93.907 kb on - strand at 93.907 kb on - strand at 93.907 kb on - strand at 94.024 kb on + strand, within MPMX19_02851 at 94.024 kb on + strand, within MPMX19_02851 at 94.024 kb on + strand, within MPMX19_02851 at 94.025 kb on - strand, within MPMX19_02851 at 94.025 kb on - strand, within MPMX19_02851 at 94.025 kb on - strand, within MPMX19_02851 at 94.025 kb on - strand, within MPMX19_02851 at 94.025 kb on - strand, within MPMX19_02851 at 94.025 kb on - strand, within MPMX19_02851 at 94.271 kb on + strand at 95.033 kb on + strand, within MPMX19_02852 at 95.033 kb on + strand, within MPMX19_02852 at 95.033 kb on + strand, within MPMX19_02852 at 95.034 kb on - strand, within MPMX19_02852 at 95.034 kb on - strand, within MPMX19_02852 at 95.034 kb on - strand, within MPMX19_02852 at 95.034 kb on - strand, within MPMX19_02852 at 95.120 kb on + strand, within MPMX19_02852 at 95.121 kb on - strand, within MPMX19_02852
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 92,950 - -0.9 92,950 - -0.9 93,031 - MPMX19_02850 0.14 -0.9 93,031 - MPMX19_02850 0.14 -0.5 93,730 - MPMX19_02850 0.83 +0.3 93,730 - MPMX19_02850 0.83 -1.1 93,840 + +0.5 93,840 + -0.7 93,840 + +0.0 93,840 + +0.8 93,840 + +0.1 93,840 + +0.0 93,840 + -0.9 93,841 - -0.1 93,841 - -0.3 93,841 - -0.3 93,841 - -1.8 93,906 + -0.9 93,906 + +0.4 93,906 + +0.2 93,906 + -2.1 93,906 + -1.1 93,906 + -1.4 93,907 - +0.1 93,907 - -0.1 93,907 - -0.4 93,907 - -0.4 94,024 + MPMX19_02851 0.33 +0.2 94,024 + MPMX19_02851 0.33 +1.9 94,024 + MPMX19_02851 0.33 -0.2 94,025 - MPMX19_02851 0.33 -1.4 94,025 - MPMX19_02851 0.33 +0.1 94,025 - MPMX19_02851 0.33 -0.9 94,025 - MPMX19_02851 0.33 +0.9 94,025 - MPMX19_02851 0.33 +0.6 94,025 - MPMX19_02851 0.33 -1.2 94,271 + -0.5 95,033 + MPMX19_02852 0.70 -1.8 95,033 + MPMX19_02852 0.70 -0.3 95,033 + MPMX19_02852 0.70 -0.5 95,034 - MPMX19_02852 0.70 -1.1 95,034 - MPMX19_02852 0.70 -0.4 95,034 - MPMX19_02852 0.70 -0.2 95,034 - MPMX19_02852 0.70 -0.4 95,120 + MPMX19_02852 0.78 -1.8 95,121 - MPMX19_02852 0.78 -0.4
Or see this region's nucleotide sequence