Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_02839 and MPMX19_02840 are separated by 59 nucleotides MPMX19_02840 and MPMX19_02841 are separated by 11 nucleotides MPMX19_02841 and MPMX19_02842 are separated by 406 nucleotides
MPMX19_02839: MPMX19_02839 - Acetyl-S-ACP:malonate ACP transferase, at 79,435 to 81,090
_02839
MPMX19_02840: MPMX19_02840 - hypothetical protein, at 81,150 to 81,914
_02840
MPMX19_02841: MPMX19_02841 - hypothetical protein, at 81,926 to 82,333
_02841
MPMX19_02842: MPMX19_02842 - HTH-type transcriptional repressor RspR, at 82,740 to 83,450
_02842
Position (kb) 81
82
83 Strain fitness (log2 ratio) -2
-1
0
1
2 at 81.025 kb on + strand at 81.025 kb on + strand at 81.025 kb on + strand at 81.025 kb on + strand at 81.025 kb on + strand at 81.025 kb on + strand at 81.025 kb on + strand at 81.025 kb on + strand at 81.025 kb on + strand at 81.026 kb on - strand at 81.026 kb on - strand at 81.026 kb on - strand at 81.026 kb on - strand at 81.026 kb on - strand at 81.026 kb on - strand at 81.026 kb on - strand at 81.026 kb on - strand at 81.026 kb on - strand at 81.026 kb on - strand at 81.026 kb on - strand at 81.026 kb on - strand at 81.026 kb on - strand at 81.026 kb on - strand at 81.026 kb on - strand at 81.026 kb on - strand at 81.241 kb on + strand, within MPMX19_02840 at 81.472 kb on + strand, within MPMX19_02840 at 81.472 kb on + strand, within MPMX19_02840 at 81.472 kb on + strand, within MPMX19_02840 at 81.472 kb on + strand, within MPMX19_02840 at 81.472 kb on + strand, within MPMX19_02840 at 81.472 kb on + strand, within MPMX19_02840 at 81.472 kb on + strand, within MPMX19_02840 at 81.472 kb on + strand, within MPMX19_02840 at 81.472 kb on + strand, within MPMX19_02840 at 81.472 kb on + strand, within MPMX19_02840 at 81.472 kb on + strand, within MPMX19_02840 at 81.472 kb on + strand, within MPMX19_02840 at 81.472 kb on + strand, within MPMX19_02840 at 81.472 kb on + strand, within MPMX19_02840 at 81.472 kb on + strand, within MPMX19_02840 at 81.472 kb on + strand, within MPMX19_02840 at 81.473 kb on - strand, within MPMX19_02840 at 81.473 kb on - strand, within MPMX19_02840 at 81.473 kb on - strand, within MPMX19_02840 at 81.473 kb on - strand, within MPMX19_02840 at 81.473 kb on - strand, within MPMX19_02840 at 81.473 kb on - strand, within MPMX19_02840 at 81.473 kb on - strand, within MPMX19_02840 at 81.473 kb on - strand, within MPMX19_02840 at 81.473 kb on - strand, within MPMX19_02840 at 81.473 kb on - strand, within MPMX19_02840 at 81.473 kb on - strand, within MPMX19_02840 at 81.521 kb on - strand, within MPMX19_02840 at 81.521 kb on - strand, within MPMX19_02840 at 81.521 kb on - strand, within MPMX19_02840 at 81.521 kb on - strand, within MPMX19_02840 at 81.751 kb on + strand, within MPMX19_02840 at 81.751 kb on + strand, within MPMX19_02840 at 81.752 kb on - strand, within MPMX19_02840 at 81.752 kb on - strand, within MPMX19_02840 at 81.752 kb on - strand, within MPMX19_02840 at 81.927 kb on + strand at 81.928 kb on - strand at 82.122 kb on + strand, within MPMX19_02841 at 82.122 kb on + strand, within MPMX19_02841 at 82.122 kb on + strand, within MPMX19_02841 at 82.122 kb on + strand, within MPMX19_02841 at 82.122 kb on + strand, within MPMX19_02841 at 82.122 kb on + strand, within MPMX19_02841 at 82.122 kb on + strand, within MPMX19_02841 at 82.122 kb on + strand, within MPMX19_02841 at 82.122 kb on + strand, within MPMX19_02841 at 82.122 kb on + strand, within MPMX19_02841 at 82.122 kb on + strand, within MPMX19_02841 at 82.122 kb on + strand, within MPMX19_02841 at 82.122 kb on + strand, within MPMX19_02841 at 82.122 kb on + strand, within MPMX19_02841 at 82.122 kb on + strand, within MPMX19_02841 at 82.122 kb on + strand, within MPMX19_02841 at 82.123 kb on - strand, within MPMX19_02841 at 82.123 kb on - strand, within MPMX19_02841 at 82.123 kb on - strand, within MPMX19_02841 at 82.123 kb on - strand, within MPMX19_02841 at 82.123 kb on - strand, within MPMX19_02841 at 82.123 kb on - strand, within MPMX19_02841 at 82.123 kb on - strand, within MPMX19_02841 at 82.123 kb on - strand, within MPMX19_02841 at 82.123 kb on - strand, within MPMX19_02841 at 82.123 kb on - strand, within MPMX19_02841 at 82.123 kb on - strand, within MPMX19_02841 at 82.123 kb on - strand, within MPMX19_02841 at 82.142 kb on - strand, within MPMX19_02841 at 82.142 kb on - strand, within MPMX19_02841 at 82.142 kb on - strand, within MPMX19_02841 at 82.169 kb on + strand, within MPMX19_02841 at 82.169 kb on + strand, within MPMX19_02841 at 82.191 kb on + strand, within MPMX19_02841 at 82.191 kb on + strand, within MPMX19_02841 at 82.191 kb on + strand, within MPMX19_02841 at 82.192 kb on - strand, within MPMX19_02841 at 82.270 kb on + strand, within MPMX19_02841 at 82.296 kb on + strand at 82.296 kb on + strand at 82.296 kb on + strand at 82.297 kb on - strand at 82.557 kb on + strand at 82.621 kb on + strand at 82.621 kb on + strand at 82.621 kb on + strand at 82.621 kb on + strand at 82.622 kb on - strand at 82.713 kb on + strand at 82.743 kb on + strand at 82.744 kb on - strand at 83.082 kb on + strand, within MPMX19_02842 at 83.082 kb on + strand, within MPMX19_02842 at 83.082 kb on + strand, within MPMX19_02842 at 83.082 kb on + strand, within MPMX19_02842 at 83.083 kb on - strand, within MPMX19_02842 at 83.083 kb on - strand, within MPMX19_02842 at 83.083 kb on - strand, within MPMX19_02842 at 83.083 kb on - strand, within MPMX19_02842 at 83.169 kb on + strand, within MPMX19_02842 at 83.170 kb on - strand, within MPMX19_02842 at 83.170 kb on - strand, within MPMX19_02842 at 83.170 kb on - strand, within MPMX19_02842 at 83.170 kb on - strand, within MPMX19_02842 at 83.170 kb on - strand, within MPMX19_02842 at 83.205 kb on + strand, within MPMX19_02842 at 83.205 kb on + strand, within MPMX19_02842 at 83.205 kb on + strand, within MPMX19_02842 at 83.205 kb on + strand, within MPMX19_02842 at 83.205 kb on + strand, within MPMX19_02842 at 83.206 kb on - strand, within MPMX19_02842 at 83.206 kb on - strand, within MPMX19_02842 at 83.206 kb on - strand, within MPMX19_02842 at 83.213 kb on + strand, within MPMX19_02842
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 81,025 + +1.5 81,025 + +0.1 81,025 + -0.6 81,025 + +0.4 81,025 + -0.4 81,025 + +0.4 81,025 + +0.7 81,025 + +0.1 81,025 + -2.1 81,026 - -0.1 81,026 - +0.5 81,026 - -1.8 81,026 - -0.5 81,026 - -0.5 81,026 - -1.4 81,026 - +0.4 81,026 - +0.0 81,026 - -0.9 81,026 - -1.6 81,026 - -0.2 81,026 - -1.9 81,026 - -1.4 81,026 - -1.0 81,026 - +0.4 81,026 - -0.6 81,241 + MPMX19_02840 0.12 +0.9 81,472 + MPMX19_02840 0.42 -0.4 81,472 + MPMX19_02840 0.42 +0.2 81,472 + MPMX19_02840 0.42 -0.3 81,472 + MPMX19_02840 0.42 +1.2 81,472 + MPMX19_02840 0.42 +0.3 81,472 + MPMX19_02840 0.42 -0.2 81,472 + MPMX19_02840 0.42 -0.4 81,472 + MPMX19_02840 0.42 +0.3 81,472 + MPMX19_02840 0.42 -1.5 81,472 + MPMX19_02840 0.42 -1.6 81,472 + MPMX19_02840 0.42 -1.0 81,472 + MPMX19_02840 0.42 +0.1 81,472 + MPMX19_02840 0.42 +0.3 81,472 + MPMX19_02840 0.42 +0.4 81,472 + MPMX19_02840 0.42 -1.6 81,472 + MPMX19_02840 0.42 -0.2 81,473 - MPMX19_02840 0.42 -0.4 81,473 - MPMX19_02840 0.42 +0.4 81,473 - MPMX19_02840 0.42 +0.3 81,473 - MPMX19_02840 0.42 -0.8 81,473 - MPMX19_02840 0.42 -0.1 81,473 - MPMX19_02840 0.42 -0.9 81,473 - MPMX19_02840 0.42 +0.1 81,473 - MPMX19_02840 0.42 +0.0 81,473 - MPMX19_02840 0.42 -0.2 81,473 - MPMX19_02840 0.42 +0.9 81,473 - MPMX19_02840 0.42 -0.2 81,521 - MPMX19_02840 0.48 -1.1 81,521 - MPMX19_02840 0.48 -0.2 81,521 - MPMX19_02840 0.48 +0.6 81,521 - MPMX19_02840 0.48 -0.5 81,751 + MPMX19_02840 0.79 -0.2 81,751 + MPMX19_02840 0.79 +0.1 81,752 - MPMX19_02840 0.79 -1.1 81,752 - MPMX19_02840 0.79 -0.2 81,752 - MPMX19_02840 0.79 -0.1 81,927 + +0.5 81,928 - +1.2 82,122 + MPMX19_02841 0.48 -0.9 82,122 + MPMX19_02841 0.48 -1.1 82,122 + MPMX19_02841 0.48 -0.1 82,122 + MPMX19_02841 0.48 +0.9 82,122 + MPMX19_02841 0.48 -1.5 82,122 + MPMX19_02841 0.48 -1.4 82,122 + MPMX19_02841 0.48 +0.9 82,122 + MPMX19_02841 0.48 +2.3 82,122 + MPMX19_02841 0.48 +0.4 82,122 + MPMX19_02841 0.48 -0.4 82,122 + MPMX19_02841 0.48 -0.5 82,122 + MPMX19_02841 0.48 -2.4 82,122 + MPMX19_02841 0.48 -1.9 82,122 + MPMX19_02841 0.48 -0.8 82,122 + MPMX19_02841 0.48 +0.0 82,122 + MPMX19_02841 0.48 +0.9 82,123 - MPMX19_02841 0.48 -1.6 82,123 - MPMX19_02841 0.48 -0.7 82,123 - MPMX19_02841 0.48 -1.4 82,123 - MPMX19_02841 0.48 -1.1 82,123 - MPMX19_02841 0.48 -0.6 82,123 - MPMX19_02841 0.48 -1.2 82,123 - MPMX19_02841 0.48 -0.3 82,123 - MPMX19_02841 0.48 +0.8 82,123 - MPMX19_02841 0.48 -0.7 82,123 - MPMX19_02841 0.48 -0.5 82,123 - MPMX19_02841 0.48 +1.4 82,123 - MPMX19_02841 0.48 -0.8 82,142 - MPMX19_02841 0.53 -0.5 82,142 - MPMX19_02841 0.53 -1.3 82,142 - MPMX19_02841 0.53 +0.6 82,169 + MPMX19_02841 0.60 -1.5 82,169 + MPMX19_02841 0.60 +1.7 82,191 + MPMX19_02841 0.65 -1.8 82,191 + MPMX19_02841 0.65 -1.2 82,191 + MPMX19_02841 0.65 +0.8 82,192 - MPMX19_02841 0.65 -0.9 82,270 + MPMX19_02841 0.84 -0.2 82,296 + -0.1 82,296 + -0.1 82,296 + -1.6 82,297 - +0.1 82,557 + -0.1 82,621 + -0.5 82,621 + -0.1 82,621 + -1.1 82,621 + -1.1 82,622 - +1.4 82,713 + -0.1 82,743 + -0.7 82,744 - -0.3 83,082 + MPMX19_02842 0.48 -1.4 83,082 + MPMX19_02842 0.48 -0.6 83,082 + MPMX19_02842 0.48 -0.6 83,082 + MPMX19_02842 0.48 -1.7 83,083 - MPMX19_02842 0.48 +0.3 83,083 - MPMX19_02842 0.48 -0.6 83,083 - MPMX19_02842 0.48 -0.7 83,083 - MPMX19_02842 0.48 +1.2 83,169 + MPMX19_02842 0.60 -0.6 83,170 - MPMX19_02842 0.60 -0.9 83,170 - MPMX19_02842 0.60 -0.2 83,170 - MPMX19_02842 0.60 -1.1 83,170 - MPMX19_02842 0.60 -0.9 83,170 - MPMX19_02842 0.60 -1.2 83,205 + MPMX19_02842 0.65 -0.1 83,205 + MPMX19_02842 0.65 -0.5 83,205 + MPMX19_02842 0.65 +1.1 83,205 + MPMX19_02842 0.65 +0.7 83,205 + MPMX19_02842 0.65 +0.1 83,206 - MPMX19_02842 0.66 -0.4 83,206 - MPMX19_02842 0.66 -0.3 83,206 - MPMX19_02842 0.66 -1.4 83,213 + MPMX19_02842 0.67 +1.1
Or see this region's nucleotide sequence