Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_02805 and MPMX19_02806 are separated by 30 nucleotides MPMX19_02806 and MPMX19_02807 are separated by 64 nucleotides
MPMX19_02805: MPMX19_02805 - putative transporter, at 39,804 to 41,057
_02805
MPMX19_02806: MPMX19_02806 - HTH-type transcriptional regulator DmlR, at 41,088 to 42,104
_02806
MPMX19_02807: MPMX19_02807 - L-threonine dehydratase biosynthetic IlvA, at 42,169 to 43,698
_02807
Position (kb) 41
42
43 Strain fitness (log2 ratio) -2
-1
0
1
2 at 40.406 kb on - strand, within MPMX19_02805 at 40.406 kb on - strand, within MPMX19_02805 at 40.816 kb on + strand, within MPMX19_02805 at 40.816 kb on + strand, within MPMX19_02805 at 40.817 kb on - strand, within MPMX19_02805 at 40.906 kb on + strand, within MPMX19_02805 at 40.906 kb on + strand, within MPMX19_02805 at 40.906 kb on + strand, within MPMX19_02805 at 40.906 kb on + strand, within MPMX19_02805 at 40.906 kb on + strand, within MPMX19_02805 at 40.906 kb on + strand, within MPMX19_02805 at 40.906 kb on + strand, within MPMX19_02805 at 40.907 kb on - strand, within MPMX19_02805 at 40.907 kb on - strand, within MPMX19_02805 at 40.907 kb on - strand, within MPMX19_02805 at 40.909 kb on + strand, within MPMX19_02805 at 40.910 kb on - strand, within MPMX19_02805 at 40.910 kb on - strand, within MPMX19_02805 at 40.910 kb on - strand, within MPMX19_02805 at 40.910 kb on - strand, within MPMX19_02805 at 40.910 kb on - strand, within MPMX19_02805 at 40.910 kb on - strand, within MPMX19_02805 at 41.103 kb on + strand at 41.103 kb on + strand at 41.103 kb on + strand at 41.103 kb on + strand at 41.103 kb on + strand at 41.104 kb on - strand at 41.104 kb on - strand at 41.104 kb on - strand at 41.104 kb on - strand at 41.104 kb on - strand at 41.104 kb on - strand at 41.104 kb on - strand at 41.104 kb on - strand at 41.104 kb on - strand at 41.104 kb on - strand at 41.104 kb on - strand at 41.104 kb on - strand at 41.143 kb on + strand at 41.143 kb on + strand at 41.154 kb on + strand at 41.154 kb on + strand at 41.162 kb on - strand at 41.233 kb on - strand, within MPMX19_02806 at 41.389 kb on - strand, within MPMX19_02806 at 41.532 kb on + strand, within MPMX19_02806 at 41.532 kb on + strand, within MPMX19_02806 at 41.533 kb on - strand, within MPMX19_02806 at 41.533 kb on - strand, within MPMX19_02806 at 41.778 kb on + strand, within MPMX19_02806 at 42.006 kb on + strand at 42.006 kb on + strand at 42.006 kb on + strand at 42.006 kb on + strand at 42.006 kb on + strand at 42.006 kb on + strand at 42.007 kb on - strand at 42.007 kb on - strand at 42.007 kb on - strand at 42.007 kb on - strand at 42.102 kb on + strand at 42.102 kb on + strand at 42.102 kb on + strand at 42.103 kb on - strand at 42.103 kb on - strand at 42.138 kb on + strand at 42.138 kb on + strand at 42.139 kb on - strand at 42.139 kb on - strand at 42.139 kb on - strand at 42.139 kb on - strand at 42.139 kb on - strand at 42.139 kb on - strand at 42.139 kb on - strand at 42.139 kb on - strand at 42.139 kb on - strand at 42.139 kb on - strand at 42.184 kb on + strand at 42.184 kb on + strand at 42.184 kb on + strand at 42.184 kb on + strand at 42.184 kb on + strand at 42.184 kb on + strand at 42.184 kb on + strand at 42.184 kb on + strand at 42.185 kb on - strand at 42.185 kb on - strand at 42.185 kb on - strand at 42.185 kb on - strand at 42.214 kb on + strand at 42.214 kb on + strand at 42.215 kb on - strand at 42.215 kb on - strand at 42.215 kb on - strand at 42.215 kb on - strand at 42.215 kb on - strand at 42.215 kb on - strand at 42.337 kb on + strand, within MPMX19_02807 at 42.337 kb on + strand, within MPMX19_02807 at 42.337 kb on + strand, within MPMX19_02807 at 42.553 kb on + strand, within MPMX19_02807 at 42.553 kb on + strand, within MPMX19_02807 at 42.553 kb on + strand, within MPMX19_02807 at 42.553 kb on + strand, within MPMX19_02807 at 42.553 kb on + strand, within MPMX19_02807 at 42.553 kb on + strand, within MPMX19_02807 at 42.553 kb on + strand, within MPMX19_02807 at 42.553 kb on + strand, within MPMX19_02807 at 42.554 kb on - strand, within MPMX19_02807 at 42.607 kb on + strand, within MPMX19_02807 at 42.607 kb on + strand, within MPMX19_02807 at 42.607 kb on + strand, within MPMX19_02807 at 42.607 kb on + strand, within MPMX19_02807 at 42.607 kb on + strand, within MPMX19_02807 at 42.607 kb on + strand, within MPMX19_02807 at 42.607 kb on + strand, within MPMX19_02807 at 42.607 kb on + strand, within MPMX19_02807 at 42.608 kb on - strand, within MPMX19_02807 at 42.608 kb on - strand, within MPMX19_02807 at 42.608 kb on - strand, within MPMX19_02807 at 42.736 kb on + strand, within MPMX19_02807 at 42.736 kb on + strand, within MPMX19_02807 at 42.736 kb on + strand, within MPMX19_02807 at 42.737 kb on - strand, within MPMX19_02807 at 43.036 kb on + strand, within MPMX19_02807 at 43.036 kb on + strand, within MPMX19_02807 at 43.037 kb on - strand, within MPMX19_02807 at 43.037 kb on - strand, within MPMX19_02807
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 40,406 - MPMX19_02805 0.48 -1.4 40,406 - MPMX19_02805 0.48 +0.9 40,816 + MPMX19_02805 0.81 +0.2 40,816 + MPMX19_02805 0.81 +0.1 40,817 - MPMX19_02805 0.81 -1.2 40,906 + MPMX19_02805 0.88 +1.6 40,906 + MPMX19_02805 0.88 -0.9 40,906 + MPMX19_02805 0.88 +0.0 40,906 + MPMX19_02805 0.88 -1.0 40,906 + MPMX19_02805 0.88 -2.4 40,906 + MPMX19_02805 0.88 -2.6 40,906 + MPMX19_02805 0.88 +0.4 40,907 - MPMX19_02805 0.88 +0.0 40,907 - MPMX19_02805 0.88 +0.0 40,907 - MPMX19_02805 0.88 -0.9 40,909 + MPMX19_02805 0.88 -0.1 40,910 - MPMX19_02805 0.88 -0.9 40,910 - MPMX19_02805 0.88 +0.1 40,910 - MPMX19_02805 0.88 -0.1 40,910 - MPMX19_02805 0.88 -1.2 40,910 - MPMX19_02805 0.88 -0.1 40,910 - MPMX19_02805 0.88 -0.4 41,103 + -2.5 41,103 + -1.0 41,103 + -0.8 41,103 + -0.0 41,103 + +0.0 41,104 - -1.4 41,104 - -1.0 41,104 - -0.2 41,104 - -0.8 41,104 - -0.5 41,104 - -0.7 41,104 - -0.4 41,104 - +0.4 41,104 - -0.1 41,104 - -0.2 41,104 - -0.5 41,104 - -1.4 41,143 + -0.6 41,143 + -0.7 41,154 + -0.7 41,154 + -1.2 41,162 - -1.1 41,233 - MPMX19_02806 0.14 -0.1 41,389 - MPMX19_02806 0.30 -0.1 41,532 + MPMX19_02806 0.44 -2.0 41,532 + MPMX19_02806 0.44 +0.2 41,533 - MPMX19_02806 0.44 -0.3 41,533 - MPMX19_02806 0.44 +0.9 41,778 + MPMX19_02806 0.68 +0.7 42,006 + +1.7 42,006 + -0.4 42,006 + -0.4 42,006 + -1.1 42,006 + -0.5 42,006 + -1.0 42,007 - -0.4 42,007 - -0.5 42,007 - +0.9 42,007 - +0.9 42,102 + -1.2 42,102 + -1.2 42,102 + -0.5 42,103 - -0.3 42,103 - -1.4 42,138 + +0.3 42,138 + -0.6 42,139 - -1.2 42,139 - -0.7 42,139 - +0.2 42,139 - +0.2 42,139 - -0.5 42,139 - +1.2 42,139 - -1.2 42,139 - -0.7 42,139 - +0.8 42,139 - +0.0 42,184 + -1.2 42,184 + -0.5 42,184 + -1.1 42,184 + -0.9 42,184 + -1.1 42,184 + -0.5 42,184 + -0.9 42,184 + -1.2 42,185 - -0.4 42,185 - -0.6 42,185 - -0.4 42,185 - -0.6 42,214 + -0.6 42,214 + +1.7 42,215 - -0.4 42,215 - -1.0 42,215 - -1.1 42,215 - -1.9 42,215 - -1.8 42,215 - -1.2 42,337 + MPMX19_02807 0.11 -0.1 42,337 + MPMX19_02807 0.11 +0.1 42,337 + MPMX19_02807 0.11 +0.4 42,553 + MPMX19_02807 0.25 +0.2 42,553 + MPMX19_02807 0.25 -0.6 42,553 + MPMX19_02807 0.25 -1.2 42,553 + MPMX19_02807 0.25 -0.6 42,553 + MPMX19_02807 0.25 -0.4 42,553 + MPMX19_02807 0.25 +0.6 42,553 + MPMX19_02807 0.25 -0.2 42,553 + MPMX19_02807 0.25 -0.6 42,554 - MPMX19_02807 0.25 +0.3 42,607 + MPMX19_02807 0.29 -1.1 42,607 + MPMX19_02807 0.29 -0.6 42,607 + MPMX19_02807 0.29 +2.7 42,607 + MPMX19_02807 0.29 -1.9 42,607 + MPMX19_02807 0.29 -0.5 42,607 + MPMX19_02807 0.29 -1.2 42,607 + MPMX19_02807 0.29 -1.8 42,607 + MPMX19_02807 0.29 +0.8 42,608 - MPMX19_02807 0.29 -0.1 42,608 - MPMX19_02807 0.29 +1.6 42,608 - MPMX19_02807 0.29 -0.8 42,736 + MPMX19_02807 0.37 -0.5 42,736 + MPMX19_02807 0.37 -1.1 42,736 + MPMX19_02807 0.37 -1.1 42,737 - MPMX19_02807 0.37 +1.2 43,036 + MPMX19_02807 0.57 -0.8 43,036 + MPMX19_02807 0.57 +0.4 43,037 - MPMX19_02807 0.57 +1.1 43,037 - MPMX19_02807 0.57 +0.2
Or see this region's nucleotide sequence