Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02803

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_02801 and MPMX19_02802 overlap by 8 nucleotidesMPMX19_02802 and MPMX19_02803 are separated by 5 nucleotidesMPMX19_02803 and MPMX19_02804 are separated by 16 nucleotides MPMX19_02801: MPMX19_02801 - Lipopolysaccharide export system ATP-binding protein LptB, at 35,850 to 36,641 _02801 MPMX19_02802: MPMX19_02802 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 36,634 to 37,341 _02802 MPMX19_02803: MPMX19_02803 - putative FAD-linked oxidoreductase, at 37,347 to 38,789 _02803 MPMX19_02804: MPMX19_02804 - 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial, at 38,806 to 39,612 _02804 Position (kb) 37 38 39Strain fitness (log2 ratio) -2 -1 0 1 2at 36.612 kb on + strandat 36.612 kb on + strandat 36.612 kb on + strandat 36.612 kb on + strandat 36.612 kb on + strandat 36.613 kb on - strandat 36.613 kb on - strandat 36.613 kb on - strandat 36.639 kb on + strandat 36.639 kb on + strandat 36.639 kb on + strandat 36.639 kb on + strandat 36.640 kb on - strandat 36.640 kb on - strandat 36.831 kb on + strand, within MPMX19_02802at 36.832 kb on - strand, within MPMX19_02802at 36.989 kb on - strand, within MPMX19_02802at 36.989 kb on - strand, within MPMX19_02802at 36.989 kb on - strand, within MPMX19_02802at 37.249 kb on + strand, within MPMX19_02802at 37.249 kb on + strand, within MPMX19_02802at 37.249 kb on + strand, within MPMX19_02802at 37.249 kb on + strand, within MPMX19_02802at 37.249 kb on + strand, within MPMX19_02802at 37.249 kb on + strand, within MPMX19_02802at 37.249 kb on + strand, within MPMX19_02802at 37.249 kb on + strand, within MPMX19_02802at 37.249 kb on + strand, within MPMX19_02802at 37.250 kb on - strand, within MPMX19_02802at 37.250 kb on - strand, within MPMX19_02802at 37.250 kb on - strand, within MPMX19_02802at 37.250 kb on - strand, within MPMX19_02802at 37.250 kb on - strand, within MPMX19_02802at 37.250 kb on - strand, within MPMX19_02802at 37.250 kb on - strand, within MPMX19_02802at 37.250 kb on - strand, within MPMX19_02802at 37.250 kb on - strand, within MPMX19_02802at 37.250 kb on - strand, within MPMX19_02802at 37.250 kb on - strand, within MPMX19_02802at 37.327 kb on + strandat 37.327 kb on + strandat 37.327 kb on + strandat 37.327 kb on + strandat 37.327 kb on + strandat 37.327 kb on + strandat 37.328 kb on - strandat 37.328 kb on - strandat 37.328 kb on - strandat 37.920 kb on + strand, within MPMX19_02803at 37.920 kb on + strand, within MPMX19_02803at 38.190 kb on + strand, within MPMX19_02803at 38.191 kb on - strand, within MPMX19_02803at 38.191 kb on - strand, within MPMX19_02803at 38.191 kb on - strand, within MPMX19_02803at 38.492 kb on + strand, within MPMX19_02803at 38.493 kb on - strand, within MPMX19_02803at 38.848 kb on + strandat 39.080 kb on + strand, within MPMX19_02804at 39.081 kb on - strand, within MPMX19_02804at 39.081 kb on - strand, within MPMX19_02804at 39.343 kb on + strand, within MPMX19_02804at 39.343 kb on + strand, within MPMX19_02804at 39.344 kb on - strand, within MPMX19_02804at 39.344 kb on - strand, within MPMX19_02804at 39.530 kb on + strand, within MPMX19_02804at 39.531 kb on - strand, within MPMX19_02804at 39.531 kb on - strand, within MPMX19_02804at 39.557 kb on + strandat 39.557 kb on + strandat 39.566 kb on + strandat 39.566 kb on + strandat 39.566 kb on + strandat 39.566 kb on + strandat 39.566 kb on + strandat 39.566 kb on + strandat 39.566 kb on + strandat 39.566 kb on + strandat 39.566 kb on + strandat 39.566 kb on + strandat 39.566 kb on + strandat 39.566 kb on + strandat 39.566 kb on + strandat 39.566 kb on + strandat 39.566 kb on + strandat 39.566 kb on + strandat 39.566 kb on + strandat 39.566 kb on + strandat 39.567 kb on - strandat 39.567 kb on - strandat 39.567 kb on - strandat 39.567 kb on - strandat 39.567 kb on - strandat 39.567 kb on - strandat 39.567 kb on - strandat 39.567 kb on - strandat 39.567 kb on - strandat 39.567 kb on - strandat 39.567 kb on - strandat 39.649 kb on + strandat 39.649 kb on + strandat 39.650 kb on - strandat 39.650 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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36,612 + +0.4
36,612 + -0.2
36,612 + -0.8
36,612 + -2.0
36,612 + -0.9
36,613 - -0.1
36,613 - -0.6
36,613 - -0.6
36,639 + -0.6
36,639 + +0.4
36,639 + -0.3
36,639 + +0.5
36,640 - -1.1
36,640 - -0.4
36,831 + MPMX19_02802 0.28 -2.1
36,832 - MPMX19_02802 0.28 +0.0
36,989 - MPMX19_02802 0.50 -0.8
36,989 - MPMX19_02802 0.50 +0.7
36,989 - MPMX19_02802 0.50 -2.0
37,249 + MPMX19_02802 0.87 -0.5
37,249 + MPMX19_02802 0.87 +0.8
37,249 + MPMX19_02802 0.87 -0.9
37,249 + MPMX19_02802 0.87 +0.1
37,249 + MPMX19_02802 0.87 -1.0
37,249 + MPMX19_02802 0.87 +0.2
37,249 + MPMX19_02802 0.87 -0.4
37,249 + MPMX19_02802 0.87 +0.8
37,249 + MPMX19_02802 0.87 +1.2
37,250 - MPMX19_02802 0.87 -1.6
37,250 - MPMX19_02802 0.87 -0.6
37,250 - MPMX19_02802 0.87 -0.6
37,250 - MPMX19_02802 0.87 -0.5
37,250 - MPMX19_02802 0.87 -1.2
37,250 - MPMX19_02802 0.87 -0.9
37,250 - MPMX19_02802 0.87 +0.2
37,250 - MPMX19_02802 0.87 -0.7
37,250 - MPMX19_02802 0.87 -1.5
37,250 - MPMX19_02802 0.87 -0.6
37,250 - MPMX19_02802 0.87 +0.1
37,327 + -2.1
37,327 + -1.1
37,327 + -1.6
37,327 + +0.1
37,327 + -0.3
37,327 + -0.6
37,328 - +0.5
37,328 - +0.3
37,328 - -0.2
37,920 + MPMX19_02803 0.40 -1.0
37,920 + MPMX19_02803 0.40 -0.7
38,190 + MPMX19_02803 0.58 -1.8
38,191 - MPMX19_02803 0.58 -1.2
38,191 - MPMX19_02803 0.58 -1.1
38,191 - MPMX19_02803 0.58 -0.1
38,492 + MPMX19_02803 0.79 -0.2
38,493 - MPMX19_02803 0.79 -0.4
38,848 + +0.5
39,080 + MPMX19_02804 0.34 -1.1
39,081 - MPMX19_02804 0.34 -0.9
39,081 - MPMX19_02804 0.34 -0.4
39,343 + MPMX19_02804 0.67 -2.0
39,343 + MPMX19_02804 0.67 +0.2
39,344 - MPMX19_02804 0.67 +1.9
39,344 - MPMX19_02804 0.67 +0.6
39,530 + MPMX19_02804 0.90 -2.0
39,531 - MPMX19_02804 0.90 -1.1
39,531 - MPMX19_02804 0.90 +1.6
39,557 + -1.8
39,557 + +2.3
39,566 + -0.3
39,566 + +0.1
39,566 + -1.0
39,566 + +0.5
39,566 + -0.3
39,566 + +0.6
39,566 + -0.3
39,566 + -0.1
39,566 + -0.5
39,566 + -0.4
39,566 + +0.7
39,566 + +0.5
39,566 + -1.4
39,566 + +0.9
39,566 + +0.0
39,566 + +0.2
39,566 + -0.2
39,566 + -0.3
39,567 - -0.1
39,567 - -0.1
39,567 - -0.7
39,567 - -1.1
39,567 - -1.5
39,567 - -1.4
39,567 - +1.3
39,567 - -1.2
39,567 - +0.1
39,567 - -0.2
39,567 - -1.1
39,649 + +0.4
39,649 + -0.1
39,650 - -1.2
39,650 - +0.4

Or see this region's nucleotide sequence