Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_02779 and MPMX19_02780 are separated by 37 nucleotides MPMX19_02780 and MPMX19_02781 overlap by 14 nucleotides MPMX19_02781 and MPMX19_02782 are separated by 157 nucleotides
MPMX19_02779: MPMX19_02779 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 11,454 to 12,179
_02779
MPMX19_02780: MPMX19_02780 - hypothetical protein, at 12,217 to 12,693
_02780
MPMX19_02781: MPMX19_02781 - putative cation-transporting ATPase F, at 12,680 to 15,427
_02781
MPMX19_02782: MPMX19_02782 - 2,5-dichloro-2,5-cyclohexadiene-1,4-diol dehydrogenase LinX, at 15,585 to 16,349
_02782
Position (kb) 12
13
14
15
16 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 12.157 kb on - strand at 12.157 kb on - strand at 12.157 kb on - strand at 12.157 kb on - strand at 12.157 kb on - strand at 12.280 kb on + strand, within MPMX19_02780 at 12.280 kb on + strand, within MPMX19_02780 at 12.281 kb on - strand, within MPMX19_02780 at 12.281 kb on - strand, within MPMX19_02780 at 12.281 kb on - strand, within MPMX19_02780 at 12.281 kb on - strand, within MPMX19_02780 at 12.342 kb on + strand, within MPMX19_02780 at 12.343 kb on - strand, within MPMX19_02780 at 12.438 kb on + strand, within MPMX19_02780 at 12.439 kb on - strand, within MPMX19_02780 at 12.439 kb on - strand, within MPMX19_02780 at 12.493 kb on + strand, within MPMX19_02780 at 12.494 kb on - strand, within MPMX19_02780 at 12.494 kb on - strand, within MPMX19_02780 at 12.494 kb on - strand, within MPMX19_02780 at 12.494 kb on - strand, within MPMX19_02780 at 12.526 kb on + strand, within MPMX19_02780 at 12.526 kb on + strand, within MPMX19_02780 at 12.527 kb on - strand, within MPMX19_02780 at 12.527 kb on - strand, within MPMX19_02780 at 12.527 kb on - strand, within MPMX19_02780 at 12.598 kb on + strand, within MPMX19_02780 at 12.598 kb on + strand, within MPMX19_02780 at 12.682 kb on - strand at 12.691 kb on + strand at 12.691 kb on + strand at 12.691 kb on + strand at 12.692 kb on - strand at 12.692 kb on - strand at 12.692 kb on - strand at 12.692 kb on - strand at 12.692 kb on - strand at 12.692 kb on - strand at 12.819 kb on + strand at 12.819 kb on + strand at 12.819 kb on + strand at 12.819 kb on + strand at 12.819 kb on + strand at 12.819 kb on + strand at 12.819 kb on + strand at 12.819 kb on + strand at 12.819 kb on + strand at 12.819 kb on + strand at 12.820 kb on - strand at 12.820 kb on - strand at 12.820 kb on - strand at 12.820 kb on - strand at 12.820 kb on - strand at 12.820 kb on - strand at 12.820 kb on - strand at 13.315 kb on - strand, within MPMX19_02781 at 14.034 kb on + strand, within MPMX19_02781 at 14.034 kb on + strand, within MPMX19_02781 at 14.034 kb on + strand, within MPMX19_02781 at 14.034 kb on + strand, within MPMX19_02781 at 14.034 kb on + strand, within MPMX19_02781 at 14.034 kb on + strand, within MPMX19_02781 at 14.034 kb on + strand, within MPMX19_02781 at 14.034 kb on + strand, within MPMX19_02781 at 14.034 kb on + strand, within MPMX19_02781 at 14.034 kb on + strand, within MPMX19_02781 at 14.034 kb on + strand, within MPMX19_02781 at 14.034 kb on + strand, within MPMX19_02781 at 14.034 kb on + strand, within MPMX19_02781 at 14.034 kb on + strand, within MPMX19_02781 at 14.035 kb on - strand, within MPMX19_02781 at 14.035 kb on - strand, within MPMX19_02781 at 14.035 kb on - strand, within MPMX19_02781 at 14.035 kb on - strand, within MPMX19_02781 at 14.035 kb on - strand, within MPMX19_02781 at 14.035 kb on - strand, within MPMX19_02781 at 14.307 kb on + strand, within MPMX19_02781 at 14.308 kb on - strand, within MPMX19_02781 at 14.329 kb on - strand, within MPMX19_02781 at 14.329 kb on - strand, within MPMX19_02781 at 14.329 kb on - strand, within MPMX19_02781 at 14.583 kb on + strand, within MPMX19_02781 at 14.583 kb on + strand, within MPMX19_02781 at 14.584 kb on - strand, within MPMX19_02781 at 14.584 kb on - strand, within MPMX19_02781 at 14.584 kb on - strand, within MPMX19_02781 at 14.584 kb on - strand, within MPMX19_02781 at 14.584 kb on - strand, within MPMX19_02781 at 14.584 kb on - strand, within MPMX19_02781 at 14.584 kb on - strand, within MPMX19_02781 at 14.584 kb on - strand, within MPMX19_02781 at 14.585 kb on + strand, within MPMX19_02781 at 14.585 kb on + strand, within MPMX19_02781 at 14.585 kb on + strand, within MPMX19_02781 at 14.585 kb on + strand, within MPMX19_02781 at 14.585 kb on + strand, within MPMX19_02781 at 14.585 kb on + strand, within MPMX19_02781 at 14.585 kb on + strand, within MPMX19_02781 at 14.585 kb on + strand, within MPMX19_02781 at 14.585 kb on + strand, within MPMX19_02781 at 14.585 kb on + strand, within MPMX19_02781 at 14.585 kb on + strand, within MPMX19_02781 at 14.585 kb on + strand, within MPMX19_02781 at 14.585 kb on + strand, within MPMX19_02781 at 14.585 kb on + strand, within MPMX19_02781 at 14.585 kb on + strand, within MPMX19_02781 at 14.585 kb on + strand, within MPMX19_02781 at 14.585 kb on + strand, within MPMX19_02781 at 14.586 kb on - strand, within MPMX19_02781 at 14.586 kb on - strand, within MPMX19_02781 at 14.586 kb on - strand, within MPMX19_02781 at 14.586 kb on - strand, within MPMX19_02781 at 14.586 kb on - strand, within MPMX19_02781 at 14.586 kb on - strand, within MPMX19_02781 at 14.586 kb on - strand, within MPMX19_02781 at 14.586 kb on - strand, within MPMX19_02781 at 14.586 kb on - strand, within MPMX19_02781 at 14.586 kb on - strand, within MPMX19_02781 at 14.586 kb on - strand, within MPMX19_02781 at 14.586 kb on - strand, within MPMX19_02781 at 14.586 kb on - strand, within MPMX19_02781 at 14.793 kb on + strand, within MPMX19_02781 at 14.793 kb on + strand, within MPMX19_02781 at 14.793 kb on + strand, within MPMX19_02781 at 14.793 kb on + strand, within MPMX19_02781 at 14.794 kb on - strand, within MPMX19_02781 at 14.794 kb on - strand, within MPMX19_02781 at 14.794 kb on - strand, within MPMX19_02781 at 15.087 kb on + strand, within MPMX19_02781 at 15.087 kb on + strand, within MPMX19_02781 at 15.087 kb on + strand, within MPMX19_02781 at 15.087 kb on + strand, within MPMX19_02781 at 15.087 kb on + strand, within MPMX19_02781 at 15.087 kb on + strand, within MPMX19_02781 at 15.087 kb on + strand, within MPMX19_02781 at 15.087 kb on + strand, within MPMX19_02781 at 15.088 kb on - strand, within MPMX19_02781 at 15.088 kb on - strand, within MPMX19_02781 at 15.088 kb on - strand, within MPMX19_02781 at 15.186 kb on + strand at 15.186 kb on + strand at 15.186 kb on + strand at 15.186 kb on + strand at 15.186 kb on + strand at 15.186 kb on + strand at 15.186 kb on + strand at 15.186 kb on + strand at 15.186 kb on + strand at 15.186 kb on + strand at 15.186 kb on + strand at 15.186 kb on + strand at 15.186 kb on + strand at 15.186 kb on + strand at 15.186 kb on + strand at 15.186 kb on + strand at 15.186 kb on + strand at 15.186 kb on + strand at 15.186 kb on + strand at 15.186 kb on + strand at 15.186 kb on + strand at 15.186 kb on + strand at 15.186 kb on + strand at 15.186 kb on + strand at 15.186 kb on + strand at 15.187 kb on - strand at 15.187 kb on - strand at 15.187 kb on - strand at 15.187 kb on - strand at 15.187 kb on - strand at 15.187 kb on - strand at 15.187 kb on - strand at 15.187 kb on - strand at 15.187 kb on - strand at 15.472 kb on + strand at 15.472 kb on + strand at 15.494 kb on + strand at 15.495 kb on - strand at 15.724 kb on + strand, within MPMX19_02782 at 15.724 kb on + strand, within MPMX19_02782 at 15.724 kb on + strand, within MPMX19_02782 at 15.724 kb on + strand, within MPMX19_02782 at 15.724 kb on + strand, within MPMX19_02782 at 15.725 kb on - strand, within MPMX19_02782 at 15.725 kb on - strand, within MPMX19_02782 at 15.725 kb on - strand, within MPMX19_02782 at 15.725 kb on - strand, within MPMX19_02782 at 15.725 kb on - strand, within MPMX19_02782 at 15.725 kb on - strand, within MPMX19_02782 at 15.889 kb on + strand, within MPMX19_02782 at 15.890 kb on - strand, within MPMX19_02782 at 15.890 kb on - strand, within MPMX19_02782 at 15.890 kb on - strand, within MPMX19_02782 at 15.890 kb on - strand, within MPMX19_02782 at 15.890 kb on - strand, within MPMX19_02782 at 16.027 kb on + strand, within MPMX19_02782 at 16.028 kb on - strand, within MPMX19_02782 at 16.028 kb on - strand, within MPMX19_02782 at 16.028 kb on - strand, within MPMX19_02782 at 16.028 kb on - strand, within MPMX19_02782 at 16.028 kb on - strand, within MPMX19_02782 at 16.028 kb on - strand, within MPMX19_02782 at 16.028 kb on - strand, within MPMX19_02782 at 16.084 kb on + strand, within MPMX19_02782 at 16.084 kb on + strand, within MPMX19_02782 at 16.084 kb on + strand, within MPMX19_02782 at 16.084 kb on + strand, within MPMX19_02782 at 16.084 kb on + strand, within MPMX19_02782 at 16.084 kb on + strand, within MPMX19_02782 at 16.084 kb on + strand, within MPMX19_02782 at 16.084 kb on + strand, within MPMX19_02782 at 16.084 kb on + strand, within MPMX19_02782 at 16.085 kb on - strand, within MPMX19_02782 at 16.085 kb on - strand, within MPMX19_02782 at 16.085 kb on - strand, within MPMX19_02782 at 16.085 kb on - strand, within MPMX19_02782 at 16.085 kb on - strand, within MPMX19_02782 at 16.126 kb on + strand, within MPMX19_02782 at 16.126 kb on + strand, within MPMX19_02782 at 16.127 kb on - strand, within MPMX19_02782 at 16.127 kb on - strand, within MPMX19_02782 at 16.246 kb on + strand, within MPMX19_02782 at 16.246 kb on + strand, within MPMX19_02782 at 16.246 kb on + strand, within MPMX19_02782 at 16.246 kb on + strand, within MPMX19_02782 at 16.246 kb on + strand, within MPMX19_02782 at 16.247 kb on - strand, within MPMX19_02782 at 16.392 kb on + strand at 16.392 kb on + strand at 16.392 kb on + strand at 16.393 kb on - strand at 16.393 kb on - strand at 16.393 kb on - strand at 16.418 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 12,157 - -2.1 12,157 - -0.9 12,157 - -0.1 12,157 - -1.6 12,157 - -0.4 12,280 + MPMX19_02780 0.13 +0.4 12,280 + MPMX19_02780 0.13 +0.9 12,281 - MPMX19_02780 0.13 +0.4 12,281 - MPMX19_02780 0.13 +0.5 12,281 - MPMX19_02780 0.13 +0.1 12,281 - MPMX19_02780 0.13 +0.2 12,342 + MPMX19_02780 0.26 -0.9 12,343 - MPMX19_02780 0.26 -0.4 12,438 + MPMX19_02780 0.46 +0.1 12,439 - MPMX19_02780 0.47 -0.0 12,439 - MPMX19_02780 0.47 +0.4 12,493 + MPMX19_02780 0.58 +0.4 12,494 - MPMX19_02780 0.58 +0.3 12,494 - MPMX19_02780 0.58 +0.1 12,494 - MPMX19_02780 0.58 -1.0 12,494 - MPMX19_02780 0.58 +1.8 12,526 + MPMX19_02780 0.65 -0.6 12,526 + MPMX19_02780 0.65 -0.7 12,527 - MPMX19_02780 0.65 +0.6 12,527 - MPMX19_02780 0.65 -0.4 12,527 - MPMX19_02780 0.65 +0.5 12,598 + MPMX19_02780 0.80 +1.2 12,598 + MPMX19_02780 0.80 -0.2 12,682 - -1.3 12,691 + -0.1 12,691 + -1.8 12,691 + -1.3 12,692 - +1.4 12,692 - -0.4 12,692 - +0.6 12,692 - +0.4 12,692 - -0.6 12,692 - -0.7 12,819 + +0.1 12,819 + +0.9 12,819 + +0.1 12,819 + -0.1 12,819 + +0.3 12,819 + -0.1 12,819 + +0.6 12,819 + +0.6 12,819 + -0.6 12,819 + -1.9 12,820 - +1.7 12,820 - -0.9 12,820 - -3.1 12,820 - +0.9 12,820 - -0.5 12,820 - -1.4 12,820 - +0.5 13,315 - MPMX19_02781 0.23 -0.6 14,034 + MPMX19_02781 0.49 -0.3 14,034 + MPMX19_02781 0.49 -0.5 14,034 + MPMX19_02781 0.49 +0.1 14,034 + MPMX19_02781 0.49 -3.1 14,034 + MPMX19_02781 0.49 +0.5 14,034 + MPMX19_02781 0.49 -0.2 14,034 + MPMX19_02781 0.49 -1.2 14,034 + MPMX19_02781 0.49 -0.1 14,034 + MPMX19_02781 0.49 -1.4 14,034 + MPMX19_02781 0.49 -0.4 14,034 + MPMX19_02781 0.49 -0.3 14,034 + MPMX19_02781 0.49 +0.1 14,034 + MPMX19_02781 0.49 -0.8 14,034 + MPMX19_02781 0.49 -1.1 14,035 - MPMX19_02781 0.49 +0.1 14,035 - MPMX19_02781 0.49 +0.4 14,035 - MPMX19_02781 0.49 +1.6 14,035 - MPMX19_02781 0.49 -0.5 14,035 - MPMX19_02781 0.49 -0.9 14,035 - MPMX19_02781 0.49 -0.5 14,307 + MPMX19_02781 0.59 +0.9 14,308 - MPMX19_02781 0.59 +0.4 14,329 - MPMX19_02781 0.60 +0.1 14,329 - MPMX19_02781 0.60 -0.2 14,329 - MPMX19_02781 0.60 -0.4 14,583 + MPMX19_02781 0.69 +0.4 14,583 + MPMX19_02781 0.69 -0.1 14,584 - MPMX19_02781 0.69 +0.7 14,584 - MPMX19_02781 0.69 +1.5 14,584 - MPMX19_02781 0.69 -0.9 14,584 - MPMX19_02781 0.69 +0.6 14,584 - MPMX19_02781 0.69 -0.2 14,584 - MPMX19_02781 0.69 +0.6 14,584 - MPMX19_02781 0.69 -1.5 14,584 - MPMX19_02781 0.69 +0.1 14,585 + MPMX19_02781 0.69 -0.1 14,585 + MPMX19_02781 0.69 -0.2 14,585 + MPMX19_02781 0.69 -0.7 14,585 + MPMX19_02781 0.69 +1.1 14,585 + MPMX19_02781 0.69 +0.1 14,585 + MPMX19_02781 0.69 +0.2 14,585 + MPMX19_02781 0.69 +0.6 14,585 + MPMX19_02781 0.69 -1.2 14,585 + MPMX19_02781 0.69 +0.1 14,585 + MPMX19_02781 0.69 -0.4 14,585 + MPMX19_02781 0.69 -1.6 14,585 + MPMX19_02781 0.69 +0.1 14,585 + MPMX19_02781 0.69 -1.8 14,585 + MPMX19_02781 0.69 -0.6 14,585 + MPMX19_02781 0.69 -1.1 14,585 + MPMX19_02781 0.69 +0.3 14,585 + MPMX19_02781 0.69 -0.1 14,586 - MPMX19_02781 0.69 -2.6 14,586 - MPMX19_02781 0.69 -0.1 14,586 - MPMX19_02781 0.69 +0.2 14,586 - MPMX19_02781 0.69 -0.2 14,586 - MPMX19_02781 0.69 +0.3 14,586 - MPMX19_02781 0.69 +0.3 14,586 - MPMX19_02781 0.69 +0.4 14,586 - MPMX19_02781 0.69 +0.8 14,586 - MPMX19_02781 0.69 -0.9 14,586 - MPMX19_02781 0.69 -1.9 14,586 - MPMX19_02781 0.69 -1.6 14,586 - MPMX19_02781 0.69 +0.9 14,586 - MPMX19_02781 0.69 -0.8 14,793 + MPMX19_02781 0.77 +1.9 14,793 + MPMX19_02781 0.77 -2.0 14,793 + MPMX19_02781 0.77 +0.5 14,793 + MPMX19_02781 0.77 +0.7 14,794 - MPMX19_02781 0.77 +0.7 14,794 - MPMX19_02781 0.77 +0.5 14,794 - MPMX19_02781 0.77 -1.2 15,087 + MPMX19_02781 0.88 +0.1 15,087 + MPMX19_02781 0.88 +0.3 15,087 + MPMX19_02781 0.88 +0.5 15,087 + MPMX19_02781 0.88 -1.6 15,087 + MPMX19_02781 0.88 +0.3 15,087 + MPMX19_02781 0.88 +1.9 15,087 + MPMX19_02781 0.88 +0.2 15,087 + MPMX19_02781 0.88 -1.0 15,088 - MPMX19_02781 0.88 -1.7 15,088 - MPMX19_02781 0.88 +0.3 15,088 - MPMX19_02781 0.88 +0.2 15,186 + +0.1 15,186 + -0.3 15,186 + -0.8 15,186 + -0.2 15,186 + -2.2 15,186 + -0.4 15,186 + +0.4 15,186 + -0.1 15,186 + -0.1 15,186 + -1.2 15,186 + -1.5 15,186 + -1.2 15,186 + +0.1 15,186 + -0.1 15,186 + -1.5 15,186 + -0.1 15,186 + -1.3 15,186 + -1.9 15,186 + +0.9 15,186 + -0.4 15,186 + +1.2 15,186 + +0.4 15,186 + -0.3 15,186 + +0.4 15,186 + -0.9 15,187 - -1.3 15,187 - +0.4 15,187 - -0.9 15,187 - -0.9 15,187 - +0.1 15,187 - +0.5 15,187 - +0.0 15,187 - -0.7 15,187 - +0.1 15,472 + -0.5 15,472 + -0.7 15,494 + +0.8 15,495 - +0.2 15,724 + MPMX19_02782 0.18 -0.4 15,724 + MPMX19_02782 0.18 -0.4 15,724 + MPMX19_02782 0.18 -1.4 15,724 + MPMX19_02782 0.18 -0.1 15,724 + MPMX19_02782 0.18 -0.1 15,725 - MPMX19_02782 0.18 +1.2 15,725 - MPMX19_02782 0.18 -0.1 15,725 - MPMX19_02782 0.18 -0.3 15,725 - MPMX19_02782 0.18 -1.1 15,725 - MPMX19_02782 0.18 -0.5 15,725 - MPMX19_02782 0.18 -1.4 15,889 + MPMX19_02782 0.40 -0.5 15,890 - MPMX19_02782 0.40 +0.1 15,890 - MPMX19_02782 0.40 -0.5 15,890 - MPMX19_02782 0.40 +0.4 15,890 - MPMX19_02782 0.40 +0.1 15,890 - MPMX19_02782 0.40 +0.3 16,027 + MPMX19_02782 0.58 -1.0 16,028 - MPMX19_02782 0.58 -1.0 16,028 - MPMX19_02782 0.58 -0.6 16,028 - MPMX19_02782 0.58 -1.1 16,028 - MPMX19_02782 0.58 -0.6 16,028 - MPMX19_02782 0.58 -0.4 16,028 - MPMX19_02782 0.58 -0.8 16,028 - MPMX19_02782 0.58 -1.4 16,084 + MPMX19_02782 0.65 -0.5 16,084 + MPMX19_02782 0.65 +0.1 16,084 + MPMX19_02782 0.65 -1.8 16,084 + MPMX19_02782 0.65 -0.1 16,084 + MPMX19_02782 0.65 +0.1 16,084 + MPMX19_02782 0.65 -0.6 16,084 + MPMX19_02782 0.65 -0.5 16,084 + MPMX19_02782 0.65 -1.4 16,084 + MPMX19_02782 0.65 +0.4 16,085 - MPMX19_02782 0.65 +2.2 16,085 - MPMX19_02782 0.65 +0.5 16,085 - MPMX19_02782 0.65 -0.3 16,085 - MPMX19_02782 0.65 +0.3 16,085 - MPMX19_02782 0.65 -0.3 16,126 + MPMX19_02782 0.71 -0.5 16,126 + MPMX19_02782 0.71 -2.1 16,127 - MPMX19_02782 0.71 +0.1 16,127 - MPMX19_02782 0.71 -1.6 16,246 + MPMX19_02782 0.86 -1.0 16,246 + MPMX19_02782 0.86 +0.0 16,246 + MPMX19_02782 0.86 -0.1 16,246 + MPMX19_02782 0.86 -0.6 16,246 + MPMX19_02782 0.86 +0.5 16,247 - MPMX19_02782 0.87 +0.5 16,392 + -0.9 16,392 + -0.1 16,392 + +0.7 16,393 - -1.1 16,393 - +0.0 16,393 - -0.8 16,418 - +0.1
Or see this region's nucleotide sequence