Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_02465 and MPMX19_02466 are separated by 137 nucleotides MPMX19_02466 and MPMX19_02467 are separated by 95 nucleotides
MPMX19_02465: MPMX19_02465 - Aspartate/alanine antiporter, at 2,586,197 to 2,587,876
_02465
MPMX19_02466: MPMX19_02466 - Octopine permease ATP-binding protein P, at 2,588,014 to 2,588,820
_02466
MPMX19_02467: MPMX19_02467 - Nopaline-binding periplasmic protein, at 2,588,916 to 2,589,761
_02467
Position (kb)
2588
2589 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2587.629 kb on + strand, within MPMX19_02465 at 2587.629 kb on + strand, within MPMX19_02465 at 2587.629 kb on + strand, within MPMX19_02465 at 2587.629 kb on + strand, within MPMX19_02465 at 2587.629 kb on + strand, within MPMX19_02465 at 2587.629 kb on + strand, within MPMX19_02465 at 2587.630 kb on - strand, within MPMX19_02465 at 2587.630 kb on - strand, within MPMX19_02465 at 2587.630 kb on - strand, within MPMX19_02465 at 2587.630 kb on - strand, within MPMX19_02465 at 2587.630 kb on - strand, within MPMX19_02465 at 2587.630 kb on - strand, within MPMX19_02465 at 2587.630 kb on - strand, within MPMX19_02465 at 2587.630 kb on - strand, within MPMX19_02465 at 2587.630 kb on - strand, within MPMX19_02465 at 2587.630 kb on - strand, within MPMX19_02465 at 2587.630 kb on - strand, within MPMX19_02465 at 2587.630 kb on - strand, within MPMX19_02465 at 2587.630 kb on - strand, within MPMX19_02465 at 2587.630 kb on - strand, within MPMX19_02465 at 2587.760 kb on + strand at 2587.760 kb on + strand at 2587.760 kb on + strand at 2587.760 kb on + strand at 2587.760 kb on + strand at 2587.760 kb on + strand at 2587.760 kb on + strand at 2587.760 kb on + strand at 2587.760 kb on + strand at 2587.760 kb on + strand at 2587.760 kb on + strand at 2587.761 kb on - strand at 2587.761 kb on - strand at 2587.761 kb on - strand at 2587.761 kb on - strand at 2587.761 kb on - strand at 2587.761 kb on - strand at 2587.761 kb on - strand at 2587.761 kb on - strand at 2587.761 kb on - strand at 2587.761 kb on - strand at 2587.761 kb on - strand at 2587.761 kb on - strand at 2587.761 kb on - strand at 2587.802 kb on + strand at 2587.802 kb on + strand at 2587.802 kb on + strand at 2587.802 kb on + strand at 2587.802 kb on + strand at 2587.802 kb on + strand at 2587.802 kb on + strand at 2587.802 kb on + strand at 2587.802 kb on + strand at 2587.802 kb on + strand at 2587.802 kb on + strand at 2587.802 kb on + strand at 2587.802 kb on + strand at 2587.802 kb on + strand at 2587.803 kb on - strand at 2587.803 kb on - strand at 2587.803 kb on - strand at 2587.803 kb on - strand at 2587.803 kb on - strand at 2587.803 kb on - strand at 2587.803 kb on - strand at 2587.803 kb on - strand at 2587.814 kb on + strand at 2587.814 kb on + strand at 2587.837 kb on + strand at 2587.838 kb on - strand at 2587.863 kb on + strand at 2587.863 kb on + strand at 2587.863 kb on + strand at 2587.863 kb on + strand at 2587.863 kb on + strand at 2587.864 kb on - strand at 2587.864 kb on - strand at 2587.864 kb on - strand at 2587.864 kb on - strand at 2587.864 kb on - strand at 2587.864 kb on - strand at 2587.864 kb on - strand at 2587.864 kb on - strand at 2587.864 kb on - strand at 2587.864 kb on - strand at 2587.954 kb on + strand at 2587.955 kb on - strand at 2587.955 kb on - strand at 2587.955 kb on - strand at 2587.955 kb on - strand at 2587.955 kb on - strand at 2587.955 kb on - strand at 2587.967 kb on - strand at 2587.967 kb on - strand at 2587.980 kb on + strand at 2587.980 kb on + strand at 2587.980 kb on + strand at 2587.981 kb on - strand at 2587.981 kb on - strand at 2588.482 kb on + strand, within MPMX19_02466 at 2588.483 kb on - strand, within MPMX19_02466 at 2588.483 kb on - strand, within MPMX19_02466 at 2588.483 kb on - strand, within MPMX19_02466 at 2588.483 kb on - strand, within MPMX19_02466 at 2588.483 kb on - strand, within MPMX19_02466 at 2589.027 kb on + strand, within MPMX19_02467 at 2589.027 kb on + strand, within MPMX19_02467 at 2589.027 kb on + strand, within MPMX19_02467 at 2589.028 kb on - strand, within MPMX19_02467 at 2589.028 kb on - strand, within MPMX19_02467 at 2589.028 kb on - strand, within MPMX19_02467 at 2589.177 kb on + strand, within MPMX19_02467 at 2589.177 kb on + strand, within MPMX19_02467 at 2589.177 kb on + strand, within MPMX19_02467 at 2589.177 kb on + strand, within MPMX19_02467 at 2589.177 kb on + strand, within MPMX19_02467 at 2589.177 kb on + strand, within MPMX19_02467 at 2589.177 kb on + strand, within MPMX19_02467 at 2589.177 kb on + strand, within MPMX19_02467 at 2589.177 kb on + strand, within MPMX19_02467 at 2589.177 kb on + strand, within MPMX19_02467 at 2589.177 kb on + strand, within MPMX19_02467 at 2589.177 kb on + strand, within MPMX19_02467 at 2589.177 kb on + strand, within MPMX19_02467 at 2589.177 kb on + strand, within MPMX19_02467 at 2589.177 kb on + strand, within MPMX19_02467 at 2589.177 kb on + strand, within MPMX19_02467 at 2589.177 kb on + strand, within MPMX19_02467 at 2589.177 kb on + strand, within MPMX19_02467 at 2589.177 kb on + strand, within MPMX19_02467 at 2589.177 kb on + strand, within MPMX19_02467 at 2589.177 kb on + strand, within MPMX19_02467 at 2589.177 kb on + strand, within MPMX19_02467 at 2589.177 kb on + strand, within MPMX19_02467 at 2589.177 kb on + strand, within MPMX19_02467 at 2589.177 kb on + strand, within MPMX19_02467 at 2589.177 kb on + strand, within MPMX19_02467 at 2589.178 kb on - strand, within MPMX19_02467 at 2589.178 kb on - strand, within MPMX19_02467 at 2589.178 kb on - strand, within MPMX19_02467 at 2589.178 kb on - strand, within MPMX19_02467 at 2589.178 kb on - strand, within MPMX19_02467 at 2589.178 kb on - strand, within MPMX19_02467 at 2589.178 kb on - strand, within MPMX19_02467 at 2589.178 kb on - strand, within MPMX19_02467 at 2589.178 kb on - strand, within MPMX19_02467 at 2589.178 kb on - strand, within MPMX19_02467 at 2589.178 kb on - strand, within MPMX19_02467 at 2589.178 kb on - strand, within MPMX19_02467 at 2589.178 kb on - strand, within MPMX19_02467 at 2589.178 kb on - strand, within MPMX19_02467 at 2589.178 kb on - strand, within MPMX19_02467 at 2589.178 kb on - strand, within MPMX19_02467 at 2589.178 kb on - strand, within MPMX19_02467 at 2589.178 kb on - strand, within MPMX19_02467 at 2589.178 kb on - strand, within MPMX19_02467 at 2589.178 kb on - strand, within MPMX19_02467 at 2589.178 kb on - strand, within MPMX19_02467 at 2589.178 kb on - strand, within MPMX19_02467 at 2589.178 kb on - strand, within MPMX19_02467 at 2589.178 kb on - strand, within MPMX19_02467 at 2589.178 kb on - strand, within MPMX19_02467 at 2589.178 kb on - strand, within MPMX19_02467 at 2589.178 kb on - strand, within MPMX19_02467 at 2589.178 kb on - strand, within MPMX19_02467 at 2589.178 kb on - strand, within MPMX19_02467 at 2589.178 kb on - strand, within MPMX19_02467 at 2589.178 kb on - strand, within MPMX19_02467 at 2589.178 kb on - strand, within MPMX19_02467 at 2589.178 kb on - strand, within MPMX19_02467 at 2589.178 kb on - strand, within MPMX19_02467 at 2589.178 kb on - strand, within MPMX19_02467 at 2589.178 kb on - strand, within MPMX19_02467 at 2589.178 kb on - strand, within MPMX19_02467 at 2589.178 kb on - strand, within MPMX19_02467 at 2589.178 kb on - strand, within MPMX19_02467 at 2589.178 kb on - strand, within MPMX19_02467 at 2589.178 kb on - strand, within MPMX19_02467 at 2589.246 kb on + strand, within MPMX19_02467 at 2589.468 kb on + strand, within MPMX19_02467 at 2589.468 kb on + strand, within MPMX19_02467 at 2589.468 kb on + strand, within MPMX19_02467 at 2589.468 kb on + strand, within MPMX19_02467 at 2589.468 kb on + strand, within MPMX19_02467 at 2589.468 kb on + strand, within MPMX19_02467 at 2589.468 kb on + strand, within MPMX19_02467 at 2589.468 kb on + strand, within MPMX19_02467 at 2589.468 kb on + strand, within MPMX19_02467 at 2589.468 kb on + strand, within MPMX19_02467 at 2589.468 kb on + strand, within MPMX19_02467 at 2589.469 kb on - strand, within MPMX19_02467 at 2589.469 kb on - strand, within MPMX19_02467 at 2589.469 kb on - strand, within MPMX19_02467 at 2589.469 kb on - strand, within MPMX19_02467 at 2589.469 kb on - strand, within MPMX19_02467 at 2589.469 kb on - strand, within MPMX19_02467 at 2589.469 kb on - strand, within MPMX19_02467 at 2589.469 kb on - strand, within MPMX19_02467 at 2589.469 kb on - strand, within MPMX19_02467 at 2589.469 kb on - strand, within MPMX19_02467 at 2589.469 kb on - strand, within MPMX19_02467 at 2589.469 kb on - strand, within MPMX19_02467 at 2589.469 kb on - strand, within MPMX19_02467 at 2589.469 kb on - strand, within MPMX19_02467 at 2589.738 kb on + strand at 2589.739 kb on - strand at 2589.739 kb on - strand at 2589.759 kb on + strand at 2589.759 kb on + strand at 2589.759 kb on + strand at 2589.759 kb on + strand at 2589.759 kb on + strand at 2589.759 kb on + strand at 2589.759 kb on + strand at 2589.759 kb on + strand at 2589.759 kb on + strand at 2589.759 kb on + strand at 2589.759 kb on + strand at 2589.759 kb on + strand at 2589.759 kb on + strand at 2589.759 kb on + strand at 2589.759 kb on + strand at 2589.759 kb on + strand at 2589.759 kb on - strand at 2589.760 kb on - strand at 2589.760 kb on - strand at 2589.760 kb on - strand at 2589.760 kb on - strand at 2589.760 kb on - strand at 2589.760 kb on - strand at 2589.760 kb on - strand at 2589.760 kb on - strand at 2589.760 kb on - strand at 2589.760 kb on - strand at 2589.760 kb on - strand at 2589.760 kb on - strand at 2589.806 kb on - strand at 2589.806 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 2,587,629 + MPMX19_02465 0.85 +0.1 2,587,629 + MPMX19_02465 0.85 -0.2 2,587,629 + MPMX19_02465 0.85 -0.3 2,587,629 + MPMX19_02465 0.85 +0.3 2,587,629 + MPMX19_02465 0.85 -0.4 2,587,629 + MPMX19_02465 0.85 +0.9 2,587,630 - MPMX19_02465 0.85 -0.2 2,587,630 - MPMX19_02465 0.85 -0.0 2,587,630 - MPMX19_02465 0.85 -2.1 2,587,630 - MPMX19_02465 0.85 +0.1 2,587,630 - MPMX19_02465 0.85 -1.4 2,587,630 - MPMX19_02465 0.85 -0.9 2,587,630 - MPMX19_02465 0.85 +0.6 2,587,630 - MPMX19_02465 0.85 -0.9 2,587,630 - MPMX19_02465 0.85 +1.4 2,587,630 - MPMX19_02465 0.85 -0.5 2,587,630 - MPMX19_02465 0.85 -0.5 2,587,630 - MPMX19_02465 0.85 -0.5 2,587,630 - MPMX19_02465 0.85 -0.2 2,587,630 - MPMX19_02465 0.85 +0.3 2,587,760 + +0.1 2,587,760 + +0.3 2,587,760 + -0.4 2,587,760 + -0.8 2,587,760 + -0.2 2,587,760 + -0.1 2,587,760 + -0.9 2,587,760 + -0.4 2,587,760 + -0.2 2,587,760 + +0.1 2,587,760 + -0.3 2,587,761 - +0.8 2,587,761 - -0.1 2,587,761 - -0.2 2,587,761 - -1.4 2,587,761 - +0.5 2,587,761 - -1.7 2,587,761 - +1.1 2,587,761 - -0.9 2,587,761 - -0.2 2,587,761 - -0.6 2,587,761 - -0.1 2,587,761 - -0.9 2,587,761 - -0.6 2,587,802 + +0.7 2,587,802 + +0.7 2,587,802 + -0.1 2,587,802 + +0.6 2,587,802 + -1.2 2,587,802 + +0.3 2,587,802 + -0.0 2,587,802 + -0.4 2,587,802 + -0.8 2,587,802 + -1.0 2,587,802 + -1.1 2,587,802 + -1.2 2,587,802 + -0.1 2,587,802 + -0.2 2,587,803 - +1.9 2,587,803 - +0.5 2,587,803 - -0.9 2,587,803 - -0.5 2,587,803 - +0.1 2,587,803 - -0.7 2,587,803 - -0.9 2,587,803 - -0.4 2,587,814 + -0.6 2,587,814 + -1.0 2,587,837 + -1.6 2,587,838 - +0.5 2,587,863 + -0.7 2,587,863 + +0.5 2,587,863 + -0.2 2,587,863 + +0.3 2,587,863 + +0.1 2,587,864 - -0.1 2,587,864 - -0.3 2,587,864 - -0.1 2,587,864 - -1.1 2,587,864 - -0.3 2,587,864 - +0.7 2,587,864 - -1.4 2,587,864 - +0.2 2,587,864 - +0.4 2,587,864 - +0.1 2,587,954 + +0.9 2,587,955 - +1.0 2,587,955 - -0.4 2,587,955 - +0.5 2,587,955 - -0.7 2,587,955 - +0.1 2,587,955 - +0.5 2,587,967 - +0.4 2,587,967 - +0.8 2,587,980 + +0.4 2,587,980 + +1.7 2,587,980 + +0.9 2,587,981 - +0.6 2,587,981 - +0.1 2,588,482 + MPMX19_02466 0.58 +0.6 2,588,483 - MPMX19_02466 0.58 -0.5 2,588,483 - MPMX19_02466 0.58 -0.2 2,588,483 - MPMX19_02466 0.58 -0.2 2,588,483 - MPMX19_02466 0.58 +0.5 2,588,483 - MPMX19_02466 0.58 +1.0 2,589,027 + MPMX19_02467 0.13 -1.2 2,589,027 + MPMX19_02467 0.13 -1.1 2,589,027 + MPMX19_02467 0.13 +0.5 2,589,028 - MPMX19_02467 0.13 -1.2 2,589,028 - MPMX19_02467 0.13 -0.9 2,589,028 - MPMX19_02467 0.13 -1.5 2,589,177 + MPMX19_02467 0.31 -1.6 2,589,177 + MPMX19_02467 0.31 -0.6 2,589,177 + MPMX19_02467 0.31 -0.9 2,589,177 + MPMX19_02467 0.31 -0.4 2,589,177 + MPMX19_02467 0.31 -2.1 2,589,177 + MPMX19_02467 0.31 +0.7 2,589,177 + MPMX19_02467 0.31 -0.7 2,589,177 + MPMX19_02467 0.31 -1.9 2,589,177 + MPMX19_02467 0.31 -3.2 2,589,177 + MPMX19_02467 0.31 -0.5 2,589,177 + MPMX19_02467 0.31 -0.2 2,589,177 + MPMX19_02467 0.31 -0.9 2,589,177 + MPMX19_02467 0.31 -0.9 2,589,177 + MPMX19_02467 0.31 -1.4 2,589,177 + MPMX19_02467 0.31 +0.4 2,589,177 + MPMX19_02467 0.31 -0.2 2,589,177 + MPMX19_02467 0.31 -1.2 2,589,177 + MPMX19_02467 0.31 -0.5 2,589,177 + MPMX19_02467 0.31 +0.2 2,589,177 + MPMX19_02467 0.31 -0.3 2,589,177 + MPMX19_02467 0.31 +0.0 2,589,177 + MPMX19_02467 0.31 -0.4 2,589,177 + MPMX19_02467 0.31 -0.6 2,589,177 + MPMX19_02467 0.31 -0.9 2,589,177 + MPMX19_02467 0.31 -0.0 2,589,177 + MPMX19_02467 0.31 -1.2 2,589,178 - MPMX19_02467 0.31 -1.8 2,589,178 - MPMX19_02467 0.31 +0.1 2,589,178 - MPMX19_02467 0.31 -0.9 2,589,178 - MPMX19_02467 0.31 -1.8 2,589,178 - MPMX19_02467 0.31 -0.3 2,589,178 - MPMX19_02467 0.31 +1.1 2,589,178 - MPMX19_02467 0.31 -0.3 2,589,178 - MPMX19_02467 0.31 -0.2 2,589,178 - MPMX19_02467 0.31 +0.3 2,589,178 - MPMX19_02467 0.31 -0.7 2,589,178 - MPMX19_02467 0.31 +0.7 2,589,178 - MPMX19_02467 0.31 +0.2 2,589,178 - MPMX19_02467 0.31 -0.7 2,589,178 - MPMX19_02467 0.31 -1.2 2,589,178 - MPMX19_02467 0.31 -0.5 2,589,178 - MPMX19_02467 0.31 +0.4 2,589,178 - MPMX19_02467 0.31 +0.2 2,589,178 - MPMX19_02467 0.31 -1.1 2,589,178 - MPMX19_02467 0.31 +1.0 2,589,178 - MPMX19_02467 0.31 +0.7 2,589,178 - MPMX19_02467 0.31 -0.9 2,589,178 - MPMX19_02467 0.31 +0.1 2,589,178 - MPMX19_02467 0.31 -2.3 2,589,178 - MPMX19_02467 0.31 -2.2 2,589,178 - MPMX19_02467 0.31 -0.7 2,589,178 - MPMX19_02467 0.31 -1.7 2,589,178 - MPMX19_02467 0.31 +0.0 2,589,178 - MPMX19_02467 0.31 +0.3 2,589,178 - MPMX19_02467 0.31 -0.6 2,589,178 - MPMX19_02467 0.31 +0.6 2,589,178 - MPMX19_02467 0.31 +1.1 2,589,178 - MPMX19_02467 0.31 -0.7 2,589,178 - MPMX19_02467 0.31 +0.5 2,589,178 - MPMX19_02467 0.31 -1.9 2,589,178 - MPMX19_02467 0.31 -1.0 2,589,178 - MPMX19_02467 0.31 -2.2 2,589,178 - MPMX19_02467 0.31 -1.4 2,589,178 - MPMX19_02467 0.31 +0.5 2,589,178 - MPMX19_02467 0.31 -0.6 2,589,178 - MPMX19_02467 0.31 -1.2 2,589,178 - MPMX19_02467 0.31 -1.7 2,589,246 + MPMX19_02467 0.39 -0.6 2,589,468 + MPMX19_02467 0.65 -1.3 2,589,468 + MPMX19_02467 0.65 -1.5 2,589,468 + MPMX19_02467 0.65 -0.2 2,589,468 + MPMX19_02467 0.65 +0.1 2,589,468 + MPMX19_02467 0.65 -0.7 2,589,468 + MPMX19_02467 0.65 +0.3 2,589,468 + MPMX19_02467 0.65 -0.3 2,589,468 + MPMX19_02467 0.65 -1.2 2,589,468 + MPMX19_02467 0.65 -0.1 2,589,468 + MPMX19_02467 0.65 +0.1 2,589,468 + MPMX19_02467 0.65 -0.5 2,589,469 - MPMX19_02467 0.65 +0.1 2,589,469 - MPMX19_02467 0.65 -1.8 2,589,469 - MPMX19_02467 0.65 -0.0 2,589,469 - MPMX19_02467 0.65 +0.0 2,589,469 - MPMX19_02467 0.65 +0.5 2,589,469 - MPMX19_02467 0.65 -0.4 2,589,469 - MPMX19_02467 0.65 -0.6 2,589,469 - MPMX19_02467 0.65 -0.6 2,589,469 - MPMX19_02467 0.65 +0.9 2,589,469 - MPMX19_02467 0.65 -0.5 2,589,469 - MPMX19_02467 0.65 -0.7 2,589,469 - MPMX19_02467 0.65 +0.1 2,589,469 - MPMX19_02467 0.65 +0.1 2,589,469 - MPMX19_02467 0.65 -0.1 2,589,738 + -0.5 2,589,739 - -0.2 2,589,739 - +1.6 2,589,759 + -0.5 2,589,759 + -0.4 2,589,759 + +2.0 2,589,759 + -0.6 2,589,759 + +1.8 2,589,759 + -0.6 2,589,759 + -1.6 2,589,759 + -0.4 2,589,759 + +0.7 2,589,759 + +0.0 2,589,759 + -1.6 2,589,759 + +0.2 2,589,759 + -0.6 2,589,759 + +1.0 2,589,759 + +0.1 2,589,759 + +0.0 2,589,759 - -0.4 2,589,760 - -0.2 2,589,760 - -0.5 2,589,760 - -1.5 2,589,760 - -1.1 2,589,760 - +0.7 2,589,760 - -1.1 2,589,760 - +0.7 2,589,760 - -0.3 2,589,760 - +0.0 2,589,760 - -0.2 2,589,760 - +0.7 2,589,760 - +0.2 2,589,806 - -0.5 2,589,806 - +0.3
Or see this region's nucleotide sequence