Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_01945

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_01943 and MPMX19_01944 are separated by 181 nucleotidesMPMX19_01944 and MPMX19_01945 are separated by 20 nucleotidesMPMX19_01945 and MPMX19_01946 are separated by 184 nucleotidesMPMX19_01946 and MPMX19_01947 overlap by 4 nucleotidesMPMX19_01947 and MPMX19_01948 are separated by 34 nucleotides MPMX19_01943: MPMX19_01943 - Gamma-glutamyl phosphate reductase, at 2,024,719 to 2,025,993 _01943 MPMX19_01944: MPMX19_01944 - putative membrane transporter protein YfcA, at 2,026,175 to 2,026,918 _01944 MPMX19_01945: MPMX19_01945 - RNA pyrophosphohydrolase, at 2,026,939 to 2,027,445 _01945 MPMX19_01946: MPMX19_01946 - hypothetical protein, at 2,027,630 to 2,027,944 _01946 MPMX19_01947: MPMX19_01947 - Chemotaxis protein CheY, at 2,027,941 to 2,028,306 _01947 MPMX19_01948: MPMX19_01948 - Chemotaxis protein CheA, at 2,028,341 to 2,030,659 _01948 Position (kb) 2026 2027 2028Strain fitness (log2 ratio) -2 -1 0 1 2at 2026.013 kb on - strandat 2026.013 kb on - strandat 2026.013 kb on - strandat 2026.013 kb on - strandat 2026.013 kb on - strandat 2026.037 kb on - strandat 2026.093 kb on - strandat 2026.166 kb on + strandat 2026.166 kb on + strandat 2026.166 kb on + strandat 2026.167 kb on - strandat 2026.167 kb on - strandat 2026.604 kb on + strand, within MPMX19_01944at 2026.604 kb on + strand, within MPMX19_01944at 2026.604 kb on + strand, within MPMX19_01944at 2026.604 kb on + strand, within MPMX19_01944at 2026.604 kb on + strand, within MPMX19_01944at 2026.605 kb on - strand, within MPMX19_01944at 2026.605 kb on - strand, within MPMX19_01944at 2026.605 kb on - strand, within MPMX19_01944at 2026.605 kb on - strand, within MPMX19_01944at 2026.605 kb on - strand, within MPMX19_01944at 2026.605 kb on - strand, within MPMX19_01944at 2026.605 kb on - strand, within MPMX19_01944at 2026.605 kb on - strand, within MPMX19_01944at 2026.605 kb on - strand, within MPMX19_01944at 2026.613 kb on + strand, within MPMX19_01944at 2026.614 kb on - strand, within MPMX19_01944at 2026.614 kb on - strand, within MPMX19_01944at 2026.614 kb on - strand, within MPMX19_01944at 2026.614 kb on - strand, within MPMX19_01944at 2026.614 kb on - strand, within MPMX19_01944at 2026.614 kb on - strand, within MPMX19_01944at 2026.763 kb on + strand, within MPMX19_01944at 2026.763 kb on + strand, within MPMX19_01944at 2026.763 kb on + strand, within MPMX19_01944at 2026.763 kb on + strand, within MPMX19_01944at 2026.763 kb on + strand, within MPMX19_01944at 2026.763 kb on + strand, within MPMX19_01944at 2026.763 kb on + strand, within MPMX19_01944at 2026.764 kb on - strand, within MPMX19_01944at 2026.764 kb on - strand, within MPMX19_01944at 2026.764 kb on - strand, within MPMX19_01944at 2026.764 kb on - strand, within MPMX19_01944at 2026.764 kb on - strand, within MPMX19_01944at 2026.764 kb on - strand, within MPMX19_01944at 2026.764 kb on - strand, within MPMX19_01944at 2026.811 kb on + strand, within MPMX19_01944at 2026.812 kb on - strand, within MPMX19_01944at 2026.812 kb on - strand, within MPMX19_01944at 2026.812 kb on - strand, within MPMX19_01944at 2026.895 kb on + strandat 2026.895 kb on + strandat 2026.895 kb on + strandat 2026.895 kb on + strandat 2026.895 kb on + strandat 2026.895 kb on + strandat 2026.895 kb on + strandat 2026.895 kb on + strandat 2026.895 kb on + strandat 2026.895 kb on + strandat 2026.895 kb on + strandat 2026.895 kb on + strandat 2026.895 kb on + strandat 2026.895 kb on + strandat 2026.895 kb on + strandat 2026.895 kb on + strandat 2026.895 kb on + strandat 2026.895 kb on + strandat 2026.895 kb on + strandat 2026.895 kb on + strandat 2026.895 kb on + strandat 2026.895 kb on + strandat 2026.896 kb on - strandat 2026.896 kb on - strandat 2026.896 kb on - strandat 2026.896 kb on - strandat 2026.896 kb on - strandat 2026.896 kb on - strandat 2026.896 kb on - strandat 2026.896 kb on - strandat 2026.896 kb on - strandat 2026.896 kb on - strandat 2026.896 kb on - strandat 2026.987 kb on + strandat 2026.988 kb on - strandat 2026.988 kb on - strandat 2026.988 kb on - strandat 2027.194 kb on + strand, within MPMX19_01945at 2027.194 kb on + strand, within MPMX19_01945at 2027.194 kb on + strand, within MPMX19_01945at 2027.195 kb on - strand, within MPMX19_01945at 2027.195 kb on - strand, within MPMX19_01945at 2027.195 kb on - strand, within MPMX19_01945at 2027.195 kb on - strand, within MPMX19_01945at 2027.392 kb on + strand, within MPMX19_01945at 2027.392 kb on + strand, within MPMX19_01945at 2027.392 kb on + strand, within MPMX19_01945at 2027.392 kb on + strand, within MPMX19_01945at 2027.392 kb on + strand, within MPMX19_01945at 2027.392 kb on + strand, within MPMX19_01945at 2027.392 kb on + strand, within MPMX19_01945at 2027.392 kb on + strand, within MPMX19_01945at 2027.392 kb on + strand, within MPMX19_01945at 2027.392 kb on + strand, within MPMX19_01945at 2027.393 kb on - strand, within MPMX19_01945at 2027.393 kb on - strand, within MPMX19_01945at 2027.393 kb on - strand, within MPMX19_01945at 2027.393 kb on - strand, within MPMX19_01945at 2027.393 kb on - strand, within MPMX19_01945at 2027.393 kb on - strand, within MPMX19_01945at 2027.545 kb on - strandat 2027.545 kb on - strandat 2027.614 kb on + strandat 2027.615 kb on - strandat 2028.019 kb on + strand, within MPMX19_01947at 2028.019 kb on + strand, within MPMX19_01947at 2028.019 kb on + strand, within MPMX19_01947at 2028.019 kb on + strand, within MPMX19_01947at 2028.020 kb on - strand, within MPMX19_01947at 2028.020 kb on - strand, within MPMX19_01947at 2028.020 kb on - strand, within MPMX19_01947at 2028.020 kb on - strand, within MPMX19_01947at 2028.371 kb on + strandat 2028.371 kb on + strandat 2028.371 kb on + strandat 2028.371 kb on + strandat 2028.371 kb on + strandat 2028.371 kb on + strandat 2028.371 kb on + strandat 2028.371 kb on + strandat 2028.371 kb on + strandat 2028.371 kb on + strandat 2028.371 kb on + strandat 2028.371 kb on + strandat 2028.371 kb on + strandat 2028.371 kb on + strandat 2028.371 kb on + strandat 2028.371 kb on + strandat 2028.371 kb on + strandat 2028.372 kb on - strandat 2028.372 kb on - strandat 2028.372 kb on - strandat 2028.372 kb on - strandat 2028.372 kb on - strandat 2028.372 kb on - strandat 2028.372 kb on - strandat 2028.372 kb on - strandat 2028.372 kb on - strandat 2028.372 kb on - strandat 2028.372 kb on - strandat 2028.372 kb on - strandat 2028.372 kb on - strandat 2028.372 kb on - strandat 2028.372 kb on - strandat 2028.372 kb on - strandat 2028.372 kb on - strandat 2028.372 kb on - strandat 2028.372 kb on - strandat 2028.372 kb on - strandat 2028.372 kb on - strandat 2028.372 kb on - strandat 2028.372 kb on - strandat 2028.372 kb on - strandat 2028.372 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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2,026,013 - +0.6
2,026,013 - -0.3
2,026,013 - +1.7
2,026,013 - -0.2
2,026,013 - +1.8
2,026,037 - +2.0
2,026,093 - -0.6
2,026,166 + -1.4
2,026,166 + -0.8
2,026,166 + -1.0
2,026,167 - +1.1
2,026,167 - +0.5
2,026,604 + MPMX19_01944 0.58 +0.9
2,026,604 + MPMX19_01944 0.58 -0.5
2,026,604 + MPMX19_01944 0.58 +0.4
2,026,604 + MPMX19_01944 0.58 -0.0
2,026,604 + MPMX19_01944 0.58 -0.5
2,026,605 - MPMX19_01944 0.58 -0.2
2,026,605 - MPMX19_01944 0.58 -0.0
2,026,605 - MPMX19_01944 0.58 -0.4
2,026,605 - MPMX19_01944 0.58 +0.3
2,026,605 - MPMX19_01944 0.58 -0.8
2,026,605 - MPMX19_01944 0.58 +0.4
2,026,605 - MPMX19_01944 0.58 -0.5
2,026,605 - MPMX19_01944 0.58 -0.5
2,026,605 - MPMX19_01944 0.58 -0.5
2,026,613 + MPMX19_01944 0.59 +0.0
2,026,614 - MPMX19_01944 0.59 -0.4
2,026,614 - MPMX19_01944 0.59 +0.7
2,026,614 - MPMX19_01944 0.59 +1.2
2,026,614 - MPMX19_01944 0.59 +0.4
2,026,614 - MPMX19_01944 0.59 +1.0
2,026,614 - MPMX19_01944 0.59 +0.9
2,026,763 + MPMX19_01944 0.79 +0.2
2,026,763 + MPMX19_01944 0.79 +0.8
2,026,763 + MPMX19_01944 0.79 -0.9
2,026,763 + MPMX19_01944 0.79 +0.4
2,026,763 + MPMX19_01944 0.79 -0.5
2,026,763 + MPMX19_01944 0.79 -0.5
2,026,763 + MPMX19_01944 0.79 -0.4
2,026,764 - MPMX19_01944 0.79 +0.4
2,026,764 - MPMX19_01944 0.79 +0.5
2,026,764 - MPMX19_01944 0.79 -0.4
2,026,764 - MPMX19_01944 0.79 -0.4
2,026,764 - MPMX19_01944 0.79 +0.3
2,026,764 - MPMX19_01944 0.79 +1.2
2,026,764 - MPMX19_01944 0.79 +1.2
2,026,811 + MPMX19_01944 0.85 -1.2
2,026,812 - MPMX19_01944 0.86 +1.5
2,026,812 - MPMX19_01944 0.86 -1.9
2,026,812 - MPMX19_01944 0.86 -0.1
2,026,895 + +0.3
2,026,895 + -0.2
2,026,895 + -0.2
2,026,895 + -0.0
2,026,895 + +0.6
2,026,895 + +0.5
2,026,895 + -0.6
2,026,895 + -1.4
2,026,895 + -0.2
2,026,895 + -0.7
2,026,895 + -0.2
2,026,895 + -0.6
2,026,895 + +0.5
2,026,895 + +1.0
2,026,895 + +0.8
2,026,895 + -0.0
2,026,895 + -0.8
2,026,895 + +0.3
2,026,895 + -1.5
2,026,895 + -0.5
2,026,895 + +0.2
2,026,895 + -0.8
2,026,896 - -1.4
2,026,896 - +0.0
2,026,896 - -0.0
2,026,896 - -1.0
2,026,896 - -1.8
2,026,896 - +0.7
2,026,896 - -0.8
2,026,896 - -0.5
2,026,896 - +1.2
2,026,896 - -0.2
2,026,896 - -0.8
2,026,987 + -1.0
2,026,988 - -0.7
2,026,988 - -1.7
2,026,988 - -2.3
2,027,194 + MPMX19_01945 0.50 -1.4
2,027,194 + MPMX19_01945 0.50 -1.1
2,027,194 + MPMX19_01945 0.50 -1.8
2,027,195 - MPMX19_01945 0.50 -1.0
2,027,195 - MPMX19_01945 0.50 -1.0
2,027,195 - MPMX19_01945 0.50 +0.7
2,027,195 - MPMX19_01945 0.50 -0.0
2,027,392 + MPMX19_01945 0.89 -0.1
2,027,392 + MPMX19_01945 0.89 -1.4
2,027,392 + MPMX19_01945 0.89 +0.2
2,027,392 + MPMX19_01945 0.89 -0.2
2,027,392 + MPMX19_01945 0.89 -0.0
2,027,392 + MPMX19_01945 0.89 +1.0
2,027,392 + MPMX19_01945 0.89 -1.0
2,027,392 + MPMX19_01945 0.89 -0.5
2,027,392 + MPMX19_01945 0.89 -0.0
2,027,392 + MPMX19_01945 0.89 -2.1
2,027,393 - MPMX19_01945 0.90 -0.1
2,027,393 - MPMX19_01945 0.90 -0.2
2,027,393 - MPMX19_01945 0.90 -2.6
2,027,393 - MPMX19_01945 0.90 -1.2
2,027,393 - MPMX19_01945 0.90 -1.6
2,027,393 - MPMX19_01945 0.90 -0.2
2,027,545 - -0.1
2,027,545 - +1.0
2,027,614 + -0.1
2,027,615 - -0.7
2,028,019 + MPMX19_01947 0.21 -1.4
2,028,019 + MPMX19_01947 0.21 -0.6
2,028,019 + MPMX19_01947 0.21 +0.5
2,028,019 + MPMX19_01947 0.21 -0.2
2,028,020 - MPMX19_01947 0.22 +0.1
2,028,020 - MPMX19_01947 0.22 +1.4
2,028,020 - MPMX19_01947 0.22 +1.0
2,028,020 - MPMX19_01947 0.22 -1.2
2,028,371 + -1.5
2,028,371 + -0.5
2,028,371 + -1.7
2,028,371 + +1.2
2,028,371 + +0.6
2,028,371 + +0.8
2,028,371 + +0.6
2,028,371 + +0.2
2,028,371 + -0.3
2,028,371 + -0.0
2,028,371 + -0.9
2,028,371 + +0.4
2,028,371 + +0.7
2,028,371 + -0.4
2,028,371 + +0.1
2,028,371 + -0.4
2,028,371 + +0.8
2,028,372 - -0.0
2,028,372 - +2.0
2,028,372 - +0.6
2,028,372 - -1.9
2,028,372 - -0.1
2,028,372 - -0.1
2,028,372 - -0.2
2,028,372 - -1.9
2,028,372 - -0.9
2,028,372 - -1.1
2,028,372 - -0.1
2,028,372 - +0.7
2,028,372 - +0.3
2,028,372 - -0.4
2,028,372 - +1.1
2,028,372 - -0.4
2,028,372 - -0.9
2,028,372 - -0.4
2,028,372 - +0.1
2,028,372 - -1.6
2,028,372 - +1.0
2,028,372 - -0.6
2,028,372 - -1.7
2,028,372 - -1.8
2,028,372 - +0.2

Or see this region's nucleotide sequence