Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_01892

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_01890 and MPMX19_01891 are separated by 136 nucleotidesMPMX19_01891 and MPMX19_01892 are separated by 147 nucleotidesMPMX19_01892 and MPMX19_01893 are separated by 60 nucleotides MPMX19_01890: MPMX19_01890 - Glyoxalase ElbB, at 1,972,770 to 1,973,438 _01890 MPMX19_01891: MPMX19_01891 - hypothetical protein, at 1,973,575 to 1,974,144 _01891 MPMX19_01892: MPMX19_01892 - hypothetical protein, at 1,974,292 to 1,974,516 _01892 MPMX19_01893: MPMX19_01893 - Glutamine-dependent NAD(+) synthetase, at 1,974,577 to 1,976,274 _01893 Position (kb) 1974 1975Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1973.358 kb on + strand, within MPMX19_01890at 1973.358 kb on + strand, within MPMX19_01890at 1973.358 kb on + strand, within MPMX19_01890at 1973.358 kb on + strand, within MPMX19_01890at 1973.358 kb on + strand, within MPMX19_01890at 1973.358 kb on + strand, within MPMX19_01890at 1973.358 kb on + strand, within MPMX19_01890at 1973.358 kb on + strand, within MPMX19_01890at 1973.358 kb on + strand, within MPMX19_01890at 1973.358 kb on + strand, within MPMX19_01890at 1973.358 kb on + strand, within MPMX19_01890at 1973.358 kb on + strand, within MPMX19_01890at 1973.358 kb on + strand, within MPMX19_01890at 1973.358 kb on + strand, within MPMX19_01890at 1973.358 kb on + strand, within MPMX19_01890at 1973.358 kb on + strand, within MPMX19_01890at 1973.358 kb on + strand, within MPMX19_01890at 1973.358 kb on + strand, within MPMX19_01890at 1973.358 kb on + strand, within MPMX19_01890at 1973.358 kb on + strand, within MPMX19_01890at 1973.358 kb on + strand, within MPMX19_01890at 1973.358 kb on + strand, within MPMX19_01890at 1973.358 kb on + strand, within MPMX19_01890at 1973.358 kb on + strand, within MPMX19_01890at 1973.359 kb on - strand, within MPMX19_01890at 1973.359 kb on - strand, within MPMX19_01890at 1973.359 kb on - strand, within MPMX19_01890at 1973.359 kb on - strand, within MPMX19_01890at 1973.359 kb on - strand, within MPMX19_01890at 1973.359 kb on - strand, within MPMX19_01890at 1973.359 kb on - strand, within MPMX19_01890at 1973.359 kb on - strand, within MPMX19_01890at 1973.359 kb on - strand, within MPMX19_01890at 1973.359 kb on - strand, within MPMX19_01890at 1973.359 kb on - strand, within MPMX19_01890at 1973.359 kb on - strand, within MPMX19_01890at 1973.359 kb on - strand, within MPMX19_01890at 1973.359 kb on - strand, within MPMX19_01890at 1973.359 kb on - strand, within MPMX19_01890at 1973.359 kb on - strand, within MPMX19_01890at 1973.359 kb on - strand, within MPMX19_01890at 1973.359 kb on - strand, within MPMX19_01890at 1973.359 kb on - strand, within MPMX19_01890at 1973.359 kb on - strand, within MPMX19_01890at 1973.359 kb on - strand, within MPMX19_01890at 1973.359 kb on - strand, within MPMX19_01890at 1973.359 kb on - strand, within MPMX19_01890at 1973.359 kb on - strand, within MPMX19_01890at 1973.359 kb on - strand, within MPMX19_01890at 1973.359 kb on - strand, within MPMX19_01890at 1973.359 kb on - strand, within MPMX19_01890at 1973.359 kb on - strand, within MPMX19_01890at 1973.359 kb on - strand, within MPMX19_01890at 1973.359 kb on - strand, within MPMX19_01890at 1973.359 kb on - strand, within MPMX19_01890at 1973.359 kb on - strand, within MPMX19_01890at 1973.359 kb on - strand, within MPMX19_01890at 1973.359 kb on - strand, within MPMX19_01890at 1973.359 kb on - strand, within MPMX19_01890at 1973.359 kb on - strand, within MPMX19_01890at 1973.405 kb on + strandat 1973.405 kb on + strandat 1973.406 kb on - strandat 1973.406 kb on - strandat 1973.406 kb on - strandat 1973.406 kb on - strandat 1973.406 kb on - strandat 1973.406 kb on - strandat 1973.406 kb on - strandat 1973.436 kb on + strandat 1973.436 kb on + strandat 1973.436 kb on + strandat 1973.436 kb on + strandat 1973.436 kb on + strandat 1973.436 kb on + strandat 1973.436 kb on + strandat 1973.436 kb on + strandat 1973.436 kb on + strandat 1973.436 kb on + strandat 1973.436 kb on + strandat 1973.436 kb on + strandat 1973.436 kb on + strandat 1973.437 kb on - strandat 1973.437 kb on - strandat 1973.437 kb on - strandat 1973.437 kb on - strandat 1973.437 kb on - strandat 1973.437 kb on - strandat 1973.437 kb on - strandat 1973.437 kb on - strandat 1973.437 kb on - strandat 1973.437 kb on - strandat 1973.465 kb on + strandat 1973.471 kb on + strandat 1973.510 kb on + strandat 1973.510 kb on + strandat 1973.510 kb on + strandat 1973.511 kb on - strandat 1973.511 kb on - strandat 1973.557 kb on - strandat 1973.791 kb on + strand, within MPMX19_01891at 1973.791 kb on + strand, within MPMX19_01891at 1973.791 kb on + strand, within MPMX19_01891at 1973.791 kb on + strand, within MPMX19_01891at 1973.791 kb on + strand, within MPMX19_01891at 1973.791 kb on + strand, within MPMX19_01891at 1973.791 kb on + strand, within MPMX19_01891at 1973.791 kb on + strand, within MPMX19_01891at 1973.792 kb on - strand, within MPMX19_01891at 1973.792 kb on - strand, within MPMX19_01891at 1973.792 kb on - strand, within MPMX19_01891at 1973.792 kb on - strand, within MPMX19_01891at 1973.792 kb on - strand, within MPMX19_01891at 1973.792 kb on - strand, within MPMX19_01891at 1973.792 kb on - strand, within MPMX19_01891at 1973.792 kb on - strand, within MPMX19_01891at 1973.792 kb on - strand, within MPMX19_01891at 1973.792 kb on - strand, within MPMX19_01891at 1973.792 kb on - strand, within MPMX19_01891at 1973.845 kb on + strand, within MPMX19_01891at 1973.846 kb on - strand, within MPMX19_01891at 1973.929 kb on + strand, within MPMX19_01891at 1973.929 kb on + strand, within MPMX19_01891at 1973.929 kb on + strand, within MPMX19_01891at 1973.929 kb on + strand, within MPMX19_01891at 1973.929 kb on + strand, within MPMX19_01891at 1973.930 kb on - strand, within MPMX19_01891at 1973.930 kb on - strand, within MPMX19_01891at 1973.930 kb on - strand, within MPMX19_01891at 1973.930 kb on - strand, within MPMX19_01891at 1973.930 kb on - strand, within MPMX19_01891at 1973.930 kb on - strand, within MPMX19_01891at 1973.930 kb on - strand, within MPMX19_01891at 1973.956 kb on + strand, within MPMX19_01891at 1973.983 kb on + strand, within MPMX19_01891at 1973.983 kb on + strand, within MPMX19_01891at 1973.983 kb on + strand, within MPMX19_01891at 1973.983 kb on + strand, within MPMX19_01891at 1973.983 kb on + strand, within MPMX19_01891at 1973.983 kb on + strand, within MPMX19_01891at 1973.983 kb on + strand, within MPMX19_01891at 1973.983 kb on + strand, within MPMX19_01891at 1973.983 kb on + strand, within MPMX19_01891at 1973.984 kb on - strand, within MPMX19_01891at 1973.984 kb on - strand, within MPMX19_01891at 1973.984 kb on - strand, within MPMX19_01891at 1973.984 kb on - strand, within MPMX19_01891at 1973.984 kb on - strand, within MPMX19_01891at 1973.984 kb on - strand, within MPMX19_01891at 1973.984 kb on - strand, within MPMX19_01891at 1973.984 kb on - strand, within MPMX19_01891at 1973.984 kb on - strand, within MPMX19_01891at 1974.142 kb on + strandat 1974.143 kb on - strandat 1974.143 kb on - strandat 1974.227 kb on + strandat 1974.227 kb on + strandat 1974.227 kb on + strandat 1974.227 kb on + strandat 1974.228 kb on - strandat 1974.228 kb on - strandat 1974.228 kb on - strandat 1974.228 kb on - strandat 1974.228 kb on - strandat 1974.287 kb on + strandat 1974.310 kb on - strandat 1974.322 kb on + strand, within MPMX19_01892at 1974.322 kb on + strand, within MPMX19_01892at 1974.322 kb on + strand, within MPMX19_01892at 1974.322 kb on + strand, within MPMX19_01892at 1974.322 kb on + strand, within MPMX19_01892at 1974.322 kb on + strand, within MPMX19_01892at 1974.322 kb on + strand, within MPMX19_01892at 1974.322 kb on + strand, within MPMX19_01892at 1974.322 kb on + strand, within MPMX19_01892at 1974.322 kb on + strand, within MPMX19_01892at 1974.322 kb on + strand, within MPMX19_01892at 1974.322 kb on + strand, within MPMX19_01892at 1974.323 kb on - strand, within MPMX19_01892at 1974.323 kb on - strand, within MPMX19_01892at 1974.323 kb on - strand, within MPMX19_01892at 1974.323 kb on - strand, within MPMX19_01892at 1974.323 kb on - strand, within MPMX19_01892at 1974.323 kb on - strand, within MPMX19_01892at 1974.323 kb on - strand, within MPMX19_01892at 1974.323 kb on - strand, within MPMX19_01892at 1974.323 kb on - strand, within MPMX19_01892at 1974.578 kb on + strandat 1974.578 kb on + strandat 1974.579 kb on - strandat 1974.579 kb on - strandat 1974.579 kb on - strandat 1974.579 kb on - strandat 1974.579 kb on - strandat 1974.579 kb on - strandat 1974.579 kb on - strandat 1974.579 kb on - strandat 1974.965 kb on + strand, within MPMX19_01893at 1974.965 kb on + strand, within MPMX19_01893at 1974.965 kb on + strand, within MPMX19_01893at 1974.966 kb on - strand, within MPMX19_01893at 1974.966 kb on - strand, within MPMX19_01893at 1974.966 kb on - strand, within MPMX19_01893at 1974.966 kb on - strand, within MPMX19_01893at 1974.966 kb on - strand, within MPMX19_01893at 1975.433 kb on + strand, within MPMX19_01893at 1975.433 kb on + strand, within MPMX19_01893at 1975.433 kb on + strand, within MPMX19_01893at 1975.434 kb on - strand, within MPMX19_01893at 1975.434 kb on - strand, within MPMX19_01893at 1975.434 kb on - strand, within MPMX19_01893

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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1,973,358 + MPMX19_01890 0.88 -0.5
1,973,358 + MPMX19_01890 0.88 -1.4
1,973,358 + MPMX19_01890 0.88 -1.2
1,973,358 + MPMX19_01890 0.88 +0.8
1,973,358 + MPMX19_01890 0.88 -0.0
1,973,358 + MPMX19_01890 0.88 -0.8
1,973,358 + MPMX19_01890 0.88 -1.7
1,973,358 + MPMX19_01890 0.88 +0.7
1,973,358 + MPMX19_01890 0.88 +0.8
1,973,358 + MPMX19_01890 0.88 -0.3
1,973,358 + MPMX19_01890 0.88 +1.2
1,973,358 + MPMX19_01890 0.88 -0.5
1,973,358 + MPMX19_01890 0.88 +0.4
1,973,358 + MPMX19_01890 0.88 -2.9
1,973,358 + MPMX19_01890 0.88 -1.3
1,973,358 + MPMX19_01890 0.88 -2.6
1,973,358 + MPMX19_01890 0.88 -0.0
1,973,358 + MPMX19_01890 0.88 +1.4
1,973,358 + MPMX19_01890 0.88 +0.4
1,973,358 + MPMX19_01890 0.88 +0.2
1,973,358 + MPMX19_01890 0.88 +0.6
1,973,358 + MPMX19_01890 0.88 -2.1
1,973,358 + MPMX19_01890 0.88 -0.2
1,973,358 + MPMX19_01890 0.88 -1.5
1,973,359 - MPMX19_01890 0.88 +0.5
1,973,359 - MPMX19_01890 0.88 +0.0
1,973,359 - MPMX19_01890 0.88 -1.0
1,973,359 - MPMX19_01890 0.88 +0.1
1,973,359 - MPMX19_01890 0.88 +0.2
1,973,359 - MPMX19_01890 0.88 -0.9
1,973,359 - MPMX19_01890 0.88 +1.2
1,973,359 - MPMX19_01890 0.88 -1.6
1,973,359 - MPMX19_01890 0.88 +0.6
1,973,359 - MPMX19_01890 0.88 -0.8
1,973,359 - MPMX19_01890 0.88 -2.9
1,973,359 - MPMX19_01890 0.88 +0.4
1,973,359 - MPMX19_01890 0.88 +1.3
1,973,359 - MPMX19_01890 0.88 -1.0
1,973,359 - MPMX19_01890 0.88 +2.0
1,973,359 - MPMX19_01890 0.88 +0.4
1,973,359 - MPMX19_01890 0.88 -0.8
1,973,359 - MPMX19_01890 0.88 -0.8
1,973,359 - MPMX19_01890 0.88 +0.7
1,973,359 - MPMX19_01890 0.88 -1.4
1,973,359 - MPMX19_01890 0.88 +0.6
1,973,359 - MPMX19_01890 0.88 -0.2
1,973,359 - MPMX19_01890 0.88 +0.3
1,973,359 - MPMX19_01890 0.88 -0.1
1,973,359 - MPMX19_01890 0.88 -0.4
1,973,359 - MPMX19_01890 0.88 +0.6
1,973,359 - MPMX19_01890 0.88 +1.0
1,973,359 - MPMX19_01890 0.88 +0.0
1,973,359 - MPMX19_01890 0.88 +0.2
1,973,359 - MPMX19_01890 0.88 -1.4
1,973,359 - MPMX19_01890 0.88 -1.6
1,973,359 - MPMX19_01890 0.88 -0.5
1,973,359 - MPMX19_01890 0.88 -1.4
1,973,359 - MPMX19_01890 0.88 -0.7
1,973,359 - MPMX19_01890 0.88 -0.1
1,973,359 - MPMX19_01890 0.88 -0.1
1,973,405 + -1.0
1,973,405 + +0.2
1,973,406 - +0.5
1,973,406 - -0.2
1,973,406 - -0.4
1,973,406 - -0.6
1,973,406 - -1.5
1,973,406 - -0.8
1,973,406 - -0.6
1,973,436 + +0.5
1,973,436 + -1.0
1,973,436 + -0.5
1,973,436 + +0.8
1,973,436 + -1.7
1,973,436 + -0.1
1,973,436 + -2.6
1,973,436 + +0.1
1,973,436 + -0.5
1,973,436 + +0.4
1,973,436 + +0.2
1,973,436 + +0.4
1,973,436 + -0.8
1,973,437 - +0.1
1,973,437 - -2.1
1,973,437 - -0.3
1,973,437 - -0.6
1,973,437 - -0.3
1,973,437 - -1.9
1,973,437 - +1.3
1,973,437 - -1.3
1,973,437 - -0.4
1,973,437 - -1.4
1,973,465 + -1.2
1,973,471 + -0.0
1,973,510 + +0.3
1,973,510 + +0.9
1,973,510 + +0.8
1,973,511 - -1.4
1,973,511 - +1.3
1,973,557 - -0.1
1,973,791 + MPMX19_01891 0.38 -1.2
1,973,791 + MPMX19_01891 0.38 +0.1
1,973,791 + MPMX19_01891 0.38 -2.7
1,973,791 + MPMX19_01891 0.38 -0.7
1,973,791 + MPMX19_01891 0.38 +0.3
1,973,791 + MPMX19_01891 0.38 +0.6
1,973,791 + MPMX19_01891 0.38 -0.2
1,973,791 + MPMX19_01891 0.38 +1.8
1,973,792 - MPMX19_01891 0.38 +0.3
1,973,792 - MPMX19_01891 0.38 +0.4
1,973,792 - MPMX19_01891 0.38 -0.5
1,973,792 - MPMX19_01891 0.38 +0.2
1,973,792 - MPMX19_01891 0.38 -0.5
1,973,792 - MPMX19_01891 0.38 -0.7
1,973,792 - MPMX19_01891 0.38 -0.5
1,973,792 - MPMX19_01891 0.38 -0.5
1,973,792 - MPMX19_01891 0.38 -1.4
1,973,792 - MPMX19_01891 0.38 -0.2
1,973,792 - MPMX19_01891 0.38 -0.4
1,973,845 + MPMX19_01891 0.47 -0.0
1,973,846 - MPMX19_01891 0.48 -0.0
1,973,929 + MPMX19_01891 0.62 -0.8
1,973,929 + MPMX19_01891 0.62 +0.5
1,973,929 + MPMX19_01891 0.62 -0.8
1,973,929 + MPMX19_01891 0.62 -0.3
1,973,929 + MPMX19_01891 0.62 -0.9
1,973,930 - MPMX19_01891 0.62 +0.2
1,973,930 - MPMX19_01891 0.62 +0.4
1,973,930 - MPMX19_01891 0.62 +0.2
1,973,930 - MPMX19_01891 0.62 -1.0
1,973,930 - MPMX19_01891 0.62 -0.8
1,973,930 - MPMX19_01891 0.62 -0.5
1,973,930 - MPMX19_01891 0.62 -0.0
1,973,956 + MPMX19_01891 0.67 -0.4
1,973,983 + MPMX19_01891 0.72 -0.8
1,973,983 + MPMX19_01891 0.72 -0.0
1,973,983 + MPMX19_01891 0.72 -0.7
1,973,983 + MPMX19_01891 0.72 -0.4
1,973,983 + MPMX19_01891 0.72 -0.4
1,973,983 + MPMX19_01891 0.72 -1.3
1,973,983 + MPMX19_01891 0.72 -0.7
1,973,983 + MPMX19_01891 0.72 -0.0
1,973,983 + MPMX19_01891 0.72 +0.4
1,973,984 - MPMX19_01891 0.72 -1.1
1,973,984 - MPMX19_01891 0.72 -1.7
1,973,984 - MPMX19_01891 0.72 -1.0
1,973,984 - MPMX19_01891 0.72 -1.4
1,973,984 - MPMX19_01891 0.72 +0.5
1,973,984 - MPMX19_01891 0.72 -1.8
1,973,984 - MPMX19_01891 0.72 +0.5
1,973,984 - MPMX19_01891 0.72 -0.4
1,973,984 - MPMX19_01891 0.72 +0.4
1,974,142 + -0.6
1,974,143 - -1.6
1,974,143 - -0.5
1,974,227 + +1.7
1,974,227 + +0.2
1,974,227 + +0.2
1,974,227 + -1.0
1,974,228 - -1.2
1,974,228 - -1.2
1,974,228 - -2.1
1,974,228 - -1.0
1,974,228 - -0.2
1,974,287 + +0.8
1,974,310 - +1.0
1,974,322 + MPMX19_01892 0.13 -1.4
1,974,322 + MPMX19_01892 0.13 +0.5
1,974,322 + MPMX19_01892 0.13 -0.2
1,974,322 + MPMX19_01892 0.13 +0.4
1,974,322 + MPMX19_01892 0.13 -1.0
1,974,322 + MPMX19_01892 0.13 +0.4
1,974,322 + MPMX19_01892 0.13 +0.7
1,974,322 + MPMX19_01892 0.13 -0.5
1,974,322 + MPMX19_01892 0.13 +1.2
1,974,322 + MPMX19_01892 0.13 -0.9
1,974,322 + MPMX19_01892 0.13 -0.4
1,974,322 + MPMX19_01892 0.13 +0.2
1,974,323 - MPMX19_01892 0.14 -0.4
1,974,323 - MPMX19_01892 0.14 -0.8
1,974,323 - MPMX19_01892 0.14 -0.0
1,974,323 - MPMX19_01892 0.14 +0.2
1,974,323 - MPMX19_01892 0.14 -1.6
1,974,323 - MPMX19_01892 0.14 -1.4
1,974,323 - MPMX19_01892 0.14 +0.1
1,974,323 - MPMX19_01892 0.14 -0.0
1,974,323 - MPMX19_01892 0.14 -0.3
1,974,578 + +0.9
1,974,578 + -0.0
1,974,579 - -1.0
1,974,579 - +0.4
1,974,579 - -1.1
1,974,579 - +1.0
1,974,579 - +0.7
1,974,579 - +0.7
1,974,579 - -1.2
1,974,579 - +0.2
1,974,965 + MPMX19_01893 0.23 -0.6
1,974,965 + MPMX19_01893 0.23 -0.6
1,974,965 + MPMX19_01893 0.23 +0.7
1,974,966 - MPMX19_01893 0.23 +0.8
1,974,966 - MPMX19_01893 0.23 +0.4
1,974,966 - MPMX19_01893 0.23 +0.5
1,974,966 - MPMX19_01893 0.23 -0.2
1,974,966 - MPMX19_01893 0.23 -0.8
1,975,433 + MPMX19_01893 0.50 +0.5
1,975,433 + MPMX19_01893 0.50 +0.4
1,975,433 + MPMX19_01893 0.50 -0.4
1,975,434 - MPMX19_01893 0.50 -0.5
1,975,434 - MPMX19_01893 0.50 -2.0
1,975,434 - MPMX19_01893 0.50 -1.5

Or see this region's nucleotide sequence