Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_01789

Experiment: NF

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_01788 and MPMX19_01789 are separated by 454 nucleotidesMPMX19_01789 and MPMX19_01790 are separated by 13 nucleotidesMPMX19_01790 and MPMX19_01791 are separated by 124 nucleotides MPMX19_01788: MPMX19_01788 - tRNA-Gly, at 1,875,566 to 1,875,651 _01788 MPMX19_01789: MPMX19_01789 - Urease subunit beta, at 1,876,106 to 1,876,411 _01789 MPMX19_01790: MPMX19_01790 - Urease subunit gamma 1, at 1,876,425 to 1,876,727 _01790 MPMX19_01791: MPMX19_01791 - Urease accessory protein UreD, at 1,876,852 to 1,877,742 _01791 Position (kb) 1876 1877Strain fitness (log2 ratio) -2 -1 0 1at 1875.404 kb on + strandat 1875.405 kb on - strandat 1875.961 kb on + strandat 1875.962 kb on - strandat 1875.962 kb on - strandat 1875.962 kb on - strandat 1875.962 kb on - strandat 1875.962 kb on - strandat 1875.962 kb on - strandat 1876.039 kb on + strandat 1876.039 kb on + strandat 1876.039 kb on + strandat 1876.039 kb on + strandat 1876.040 kb on - strandat 1876.040 kb on - strandat 1876.040 kb on - strandat 1876.051 kb on + strandat 1876.051 kb on + strandat 1876.051 kb on + strandat 1876.051 kb on + strandat 1876.051 kb on + strandat 1876.052 kb on - strandat 1876.052 kb on - strandat 1876.052 kb on - strandat 1876.161 kb on + strand, within MPMX19_01789at 1876.161 kb on + strand, within MPMX19_01789at 1876.284 kb on + strand, within MPMX19_01789at 1876.284 kb on + strand, within MPMX19_01789at 1876.603 kb on + strand, within MPMX19_01790at 1876.603 kb on + strand, within MPMX19_01790at 1876.603 kb on + strand, within MPMX19_01790at 1876.603 kb on + strand, within MPMX19_01790at 1876.603 kb on + strand, within MPMX19_01790at 1876.604 kb on - strand, within MPMX19_01790at 1876.604 kb on - strand, within MPMX19_01790at 1876.604 kb on - strand, within MPMX19_01790at 1876.604 kb on - strand, within MPMX19_01790at 1876.604 kb on - strand, within MPMX19_01790at 1876.604 kb on - strand, within MPMX19_01790at 1876.604 kb on - strand, within MPMX19_01790at 1876.769 kb on + strandat 1876.769 kb on + strandat 1876.769 kb on + strandat 1876.769 kb on + strandat 1876.769 kb on + strandat 1876.769 kb on + strandat 1876.769 kb on + strandat 1876.770 kb on - strandat 1876.770 kb on - strandat 1876.770 kb on - strandat 1876.803 kb on + strandat 1876.803 kb on + strandat 1876.803 kb on + strandat 1876.803 kb on + strandat 1876.803 kb on + strandat 1876.803 kb on + strandat 1876.804 kb on - strandat 1876.804 kb on - strandat 1876.804 kb on - strandat 1876.804 kb on - strandat 1876.804 kb on - strandat 1876.804 kb on - strandat 1876.804 kb on - strandat 1876.804 kb on - strandat 1876.810 kb on + strandat 1876.810 kb on + strandat 1876.810 kb on + strandat 1876.810 kb on + strandat 1876.810 kb on + strandat 1876.810 kb on + strandat 1876.810 kb on + strandat 1876.810 kb on + strandat 1876.810 kb on + strandat 1876.810 kb on + strandat 1876.811 kb on - strandat 1876.811 kb on - strandat 1876.811 kb on - strandat 1876.811 kb on - strandat 1876.811 kb on - strandat 1876.811 kb on - strandat 1876.811 kb on - strandat 1876.811 kb on - strandat 1876.811 kb on - strandat 1876.811 kb on - strandat 1876.811 kb on - strandat 1876.811 kb on - strandat 1876.811 kb on - strandat 1876.811 kb on - strandat 1876.811 kb on - strandat 1876.928 kb on + strandat 1876.928 kb on + strandat 1876.929 kb on - strandat 1876.929 kb on - strandat 1876.929 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NF
remove
1,875,404 + -1.4
1,875,405 - -1.4
1,875,961 + +0.0
1,875,962 - +0.7
1,875,962 - -1.2
1,875,962 - +0.4
1,875,962 - -1.9
1,875,962 - -2.1
1,875,962 - -1.5
1,876,039 + +0.6
1,876,039 + -0.6
1,876,039 + -1.0
1,876,039 + -0.6
1,876,040 - +1.6
1,876,040 - +0.6
1,876,040 - -0.9
1,876,051 + -0.5
1,876,051 + +1.0
1,876,051 + -0.4
1,876,051 + +1.0
1,876,051 + -1.2
1,876,052 - -0.4
1,876,052 - -2.3
1,876,052 - -0.3
1,876,161 + MPMX19_01789 0.18 +0.4
1,876,161 + MPMX19_01789 0.18 -1.8
1,876,284 + MPMX19_01789 0.58 -0.5
1,876,284 + MPMX19_01789 0.58 -1.3
1,876,603 + MPMX19_01790 0.59 +0.6
1,876,603 + MPMX19_01790 0.59 -2.0
1,876,603 + MPMX19_01790 0.59 -1.0
1,876,603 + MPMX19_01790 0.59 +0.4
1,876,603 + MPMX19_01790 0.59 -0.0
1,876,604 - MPMX19_01790 0.59 -0.2
1,876,604 - MPMX19_01790 0.59 -0.8
1,876,604 - MPMX19_01790 0.59 -1.6
1,876,604 - MPMX19_01790 0.59 -0.0
1,876,604 - MPMX19_01790 0.59 +0.3
1,876,604 - MPMX19_01790 0.59 +0.6
1,876,604 - MPMX19_01790 0.59 -0.9
1,876,769 + -0.8
1,876,769 + -0.3
1,876,769 + -0.6
1,876,769 + -0.0
1,876,769 + -0.4
1,876,769 + -0.8
1,876,769 + +0.3
1,876,770 - -2.2
1,876,770 - -0.6
1,876,770 - +0.2
1,876,803 + -1.0
1,876,803 + -0.0
1,876,803 + -1.5
1,876,803 + -1.9
1,876,803 + +0.6
1,876,803 + +0.5
1,876,804 - +0.7
1,876,804 - +0.2
1,876,804 - +0.6
1,876,804 - -0.5
1,876,804 - -0.8
1,876,804 - -1.5
1,876,804 - -0.4
1,876,804 - +0.2
1,876,810 + -1.0
1,876,810 + +0.4
1,876,810 + -1.0
1,876,810 + +0.6
1,876,810 + -1.7
1,876,810 + -0.2
1,876,810 + -0.5
1,876,810 + +1.0
1,876,810 + -0.5
1,876,810 + +1.0
1,876,811 - +0.6
1,876,811 - -1.0
1,876,811 - -1.0
1,876,811 - -0.9
1,876,811 - -0.2
1,876,811 - +1.5
1,876,811 - +1.2
1,876,811 - -0.4
1,876,811 - -2.3
1,876,811 - +0.8
1,876,811 - +0.9
1,876,811 - -0.6
1,876,811 - -0.6
1,876,811 - +0.2
1,876,811 - +0.4
1,876,928 + -0.4
1,876,928 + +0.5
1,876,929 - -0.3
1,876,929 - -1.2
1,876,929 - +0.0

Or see this region's nucleotide sequence