Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_01788 and MPMX19_01789 are separated by 454 nucleotides MPMX19_01789 and MPMX19_01790 are separated by 13 nucleotides MPMX19_01790 and MPMX19_01791 are separated by 124 nucleotides
MPMX19_01788: MPMX19_01788 - tRNA-Gly, at 1,875,566 to 1,875,651
_01788
MPMX19_01789: MPMX19_01789 - Urease subunit beta, at 1,876,106 to 1,876,411
_01789
MPMX19_01790: MPMX19_01790 - Urease subunit gamma 1, at 1,876,425 to 1,876,727
_01790
MPMX19_01791: MPMX19_01791 - Urease accessory protein UreD, at 1,876,852 to 1,877,742
_01791
Position (kb)
1876
1877 Strain fitness (log2 ratio)
-2
-1
0
1 at 1875.404 kb on + strand at 1875.405 kb on - strand at 1875.961 kb on + strand at 1875.962 kb on - strand at 1875.962 kb on - strand at 1875.962 kb on - strand at 1875.962 kb on - strand at 1875.962 kb on - strand at 1875.962 kb on - strand at 1876.039 kb on + strand at 1876.039 kb on + strand at 1876.039 kb on + strand at 1876.039 kb on + strand at 1876.040 kb on - strand at 1876.040 kb on - strand at 1876.040 kb on - strand at 1876.051 kb on + strand at 1876.051 kb on + strand at 1876.051 kb on + strand at 1876.051 kb on + strand at 1876.051 kb on + strand at 1876.052 kb on - strand at 1876.052 kb on - strand at 1876.052 kb on - strand at 1876.161 kb on + strand, within MPMX19_01789 at 1876.161 kb on + strand, within MPMX19_01789 at 1876.284 kb on + strand, within MPMX19_01789 at 1876.284 kb on + strand, within MPMX19_01789 at 1876.603 kb on + strand, within MPMX19_01790 at 1876.603 kb on + strand, within MPMX19_01790 at 1876.603 kb on + strand, within MPMX19_01790 at 1876.603 kb on + strand, within MPMX19_01790 at 1876.603 kb on + strand, within MPMX19_01790 at 1876.604 kb on - strand, within MPMX19_01790 at 1876.604 kb on - strand, within MPMX19_01790 at 1876.604 kb on - strand, within MPMX19_01790 at 1876.604 kb on - strand, within MPMX19_01790 at 1876.604 kb on - strand, within MPMX19_01790 at 1876.604 kb on - strand, within MPMX19_01790 at 1876.604 kb on - strand, within MPMX19_01790 at 1876.769 kb on + strand at 1876.769 kb on + strand at 1876.769 kb on + strand at 1876.769 kb on + strand at 1876.769 kb on + strand at 1876.769 kb on + strand at 1876.769 kb on + strand at 1876.770 kb on - strand at 1876.770 kb on - strand at 1876.770 kb on - strand at 1876.803 kb on + strand at 1876.803 kb on + strand at 1876.803 kb on + strand at 1876.803 kb on + strand at 1876.803 kb on + strand at 1876.803 kb on + strand at 1876.804 kb on - strand at 1876.804 kb on - strand at 1876.804 kb on - strand at 1876.804 kb on - strand at 1876.804 kb on - strand at 1876.804 kb on - strand at 1876.804 kb on - strand at 1876.804 kb on - strand at 1876.810 kb on + strand at 1876.810 kb on + strand at 1876.810 kb on + strand at 1876.810 kb on + strand at 1876.810 kb on + strand at 1876.810 kb on + strand at 1876.810 kb on + strand at 1876.810 kb on + strand at 1876.810 kb on + strand at 1876.810 kb on + strand at 1876.811 kb on - strand at 1876.811 kb on - strand at 1876.811 kb on - strand at 1876.811 kb on - strand at 1876.811 kb on - strand at 1876.811 kb on - strand at 1876.811 kb on - strand at 1876.811 kb on - strand at 1876.811 kb on - strand at 1876.811 kb on - strand at 1876.811 kb on - strand at 1876.811 kb on - strand at 1876.811 kb on - strand at 1876.811 kb on - strand at 1876.811 kb on - strand at 1876.928 kb on + strand at 1876.928 kb on + strand at 1876.929 kb on - strand at 1876.929 kb on - strand at 1876.929 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 1,875,404 + -1.4 1,875,405 - -1.4 1,875,961 + +0.0 1,875,962 - +0.7 1,875,962 - -1.2 1,875,962 - +0.4 1,875,962 - -1.9 1,875,962 - -2.1 1,875,962 - -1.5 1,876,039 + +0.6 1,876,039 + -0.6 1,876,039 + -1.0 1,876,039 + -0.6 1,876,040 - +1.6 1,876,040 - +0.6 1,876,040 - -0.9 1,876,051 + -0.5 1,876,051 + +1.0 1,876,051 + -0.4 1,876,051 + +1.0 1,876,051 + -1.2 1,876,052 - -0.4 1,876,052 - -2.3 1,876,052 - -0.3 1,876,161 + MPMX19_01789 0.18 +0.4 1,876,161 + MPMX19_01789 0.18 -1.8 1,876,284 + MPMX19_01789 0.58 -0.5 1,876,284 + MPMX19_01789 0.58 -1.3 1,876,603 + MPMX19_01790 0.59 +0.6 1,876,603 + MPMX19_01790 0.59 -2.0 1,876,603 + MPMX19_01790 0.59 -1.0 1,876,603 + MPMX19_01790 0.59 +0.4 1,876,603 + MPMX19_01790 0.59 -0.0 1,876,604 - MPMX19_01790 0.59 -0.2 1,876,604 - MPMX19_01790 0.59 -0.8 1,876,604 - MPMX19_01790 0.59 -1.6 1,876,604 - MPMX19_01790 0.59 -0.0 1,876,604 - MPMX19_01790 0.59 +0.3 1,876,604 - MPMX19_01790 0.59 +0.6 1,876,604 - MPMX19_01790 0.59 -0.9 1,876,769 + -0.8 1,876,769 + -0.3 1,876,769 + -0.6 1,876,769 + -0.0 1,876,769 + -0.4 1,876,769 + -0.8 1,876,769 + +0.3 1,876,770 - -2.2 1,876,770 - -0.6 1,876,770 - +0.2 1,876,803 + -1.0 1,876,803 + -0.0 1,876,803 + -1.5 1,876,803 + -1.9 1,876,803 + +0.6 1,876,803 + +0.5 1,876,804 - +0.7 1,876,804 - +0.2 1,876,804 - +0.6 1,876,804 - -0.5 1,876,804 - -0.8 1,876,804 - -1.5 1,876,804 - -0.4 1,876,804 - +0.2 1,876,810 + -1.0 1,876,810 + +0.4 1,876,810 + -1.0 1,876,810 + +0.6 1,876,810 + -1.7 1,876,810 + -0.2 1,876,810 + -0.5 1,876,810 + +1.0 1,876,810 + -0.5 1,876,810 + +1.0 1,876,811 - +0.6 1,876,811 - -1.0 1,876,811 - -1.0 1,876,811 - -0.9 1,876,811 - -0.2 1,876,811 - +1.5 1,876,811 - +1.2 1,876,811 - -0.4 1,876,811 - -2.3 1,876,811 - +0.8 1,876,811 - +0.9 1,876,811 - -0.6 1,876,811 - -0.6 1,876,811 - +0.2 1,876,811 - +0.4 1,876,928 + -0.4 1,876,928 + +0.5 1,876,929 - -0.3 1,876,929 - -1.2 1,876,929 - +0.0
Or see this region's nucleotide sequence