Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_01479

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_01478 and MPMX19_01479 are separated by 57 nucleotidesMPMX19_01479 and MPMX19_01480 are separated by 2 nucleotidesMPMX19_01480 and MPMX19_01481 overlap by 4 nucleotides MPMX19_01478: MPMX19_01478 - DNA topoisomerase 4 subunit A, at 1,552,192 to 1,554,417 _01478 MPMX19_01479: MPMX19_01479 - hypothetical protein, at 1,554,475 to 1,555,467 _01479 MPMX19_01480: MPMX19_01480 - hypothetical protein, at 1,555,470 to 1,556,138 _01480 MPMX19_01481: MPMX19_01481 - Flagellar motor switch protein FliM, at 1,556,135 to 1,557,208 _01481 Position (kb) 1554 1555 1556Strain fitness (log2 ratio) -2 -1 0 1 2at 1554.476 kb on + strandat 1554.477 kb on - strandat 1554.677 kb on + strand, within MPMX19_01479at 1554.677 kb on + strand, within MPMX19_01479at 1554.677 kb on + strand, within MPMX19_01479at 1554.677 kb on + strand, within MPMX19_01479at 1554.677 kb on + strand, within MPMX19_01479at 1554.678 kb on - strand, within MPMX19_01479at 1554.678 kb on - strand, within MPMX19_01479at 1554.678 kb on - strand, within MPMX19_01479at 1554.678 kb on - strand, within MPMX19_01479at 1554.678 kb on - strand, within MPMX19_01479at 1554.678 kb on - strand, within MPMX19_01479at 1554.678 kb on - strand, within MPMX19_01479at 1554.678 kb on - strand, within MPMX19_01479at 1554.993 kb on + strand, within MPMX19_01479at 1554.993 kb on + strand, within MPMX19_01479at 1554.993 kb on + strand, within MPMX19_01479at 1554.993 kb on + strand, within MPMX19_01479at 1554.993 kb on + strand, within MPMX19_01479at 1554.993 kb on + strand, within MPMX19_01479at 1554.993 kb on + strand, within MPMX19_01479at 1554.993 kb on + strand, within MPMX19_01479at 1554.993 kb on + strand, within MPMX19_01479at 1554.993 kb on + strand, within MPMX19_01479at 1554.993 kb on + strand, within MPMX19_01479at 1554.993 kb on + strand, within MPMX19_01479at 1554.994 kb on - strand, within MPMX19_01479at 1554.994 kb on - strand, within MPMX19_01479at 1554.994 kb on - strand, within MPMX19_01479at 1554.994 kb on - strand, within MPMX19_01479at 1554.994 kb on - strand, within MPMX19_01479at 1554.994 kb on - strand, within MPMX19_01479at 1555.550 kb on + strand, within MPMX19_01480at 1555.550 kb on + strand, within MPMX19_01480at 1555.550 kb on + strand, within MPMX19_01480at 1555.550 kb on + strand, within MPMX19_01480at 1555.550 kb on + strand, within MPMX19_01480at 1555.550 kb on + strand, within MPMX19_01480at 1555.550 kb on + strand, within MPMX19_01480at 1555.550 kb on + strand, within MPMX19_01480at 1555.550 kb on + strand, within MPMX19_01480at 1555.550 kb on + strand, within MPMX19_01480at 1555.551 kb on - strand, within MPMX19_01480at 1555.551 kb on - strand, within MPMX19_01480at 1555.551 kb on - strand, within MPMX19_01480at 1555.551 kb on - strand, within MPMX19_01480at 1555.551 kb on - strand, within MPMX19_01480at 1555.551 kb on - strand, within MPMX19_01480at 1556.071 kb on + strand, within MPMX19_01480at 1556.071 kb on + strand, within MPMX19_01480at 1556.071 kb on + strand, within MPMX19_01480at 1556.072 kb on - strandat 1556.138 kb on + strandat 1556.138 kb on + strandat 1556.138 kb on + strandat 1556.138 kb on + strandat 1556.138 kb on + strandat 1556.138 kb on + strandat 1556.138 kb on + strandat 1556.139 kb on - strandat 1556.139 kb on - strandat 1556.139 kb on - strandat 1556.139 kb on - strandat 1556.139 kb on - strandat 1556.139 kb on - strandat 1556.139 kb on - strandat 1556.139 kb on - strandat 1556.139 kb on - strandat 1556.139 kb on - strandat 1556.209 kb on + strandat 1556.209 kb on + strandat 1556.209 kb on + strandat 1556.249 kb on + strand, within MPMX19_01481at 1556.249 kb on + strand, within MPMX19_01481at 1556.249 kb on + strand, within MPMX19_01481at 1556.249 kb on + strand, within MPMX19_01481at 1556.249 kb on + strand, within MPMX19_01481at 1556.249 kb on + strand, within MPMX19_01481at 1556.250 kb on - strand, within MPMX19_01481at 1556.250 kb on - strand, within MPMX19_01481at 1556.250 kb on - strand, within MPMX19_01481at 1556.250 kb on - strand, within MPMX19_01481at 1556.250 kb on - strand, within MPMX19_01481at 1556.250 kb on - strand, within MPMX19_01481at 1556.250 kb on - strand, within MPMX19_01481at 1556.250 kb on - strand, within MPMX19_01481at 1556.250 kb on - strand, within MPMX19_01481at 1556.250 kb on - strand, within MPMX19_01481

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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1,554,476 + -1.0
1,554,477 - -1.2
1,554,677 + MPMX19_01479 0.20 -2.2
1,554,677 + MPMX19_01479 0.20 +1.4
1,554,677 + MPMX19_01479 0.20 +0.5
1,554,677 + MPMX19_01479 0.20 -0.5
1,554,677 + MPMX19_01479 0.20 -0.6
1,554,678 - MPMX19_01479 0.20 +0.1
1,554,678 - MPMX19_01479 0.20 +0.6
1,554,678 - MPMX19_01479 0.20 -0.2
1,554,678 - MPMX19_01479 0.20 +0.3
1,554,678 - MPMX19_01479 0.20 +1.2
1,554,678 - MPMX19_01479 0.20 +0.1
1,554,678 - MPMX19_01479 0.20 -0.4
1,554,678 - MPMX19_01479 0.20 -0.2
1,554,993 + MPMX19_01479 0.52 -0.2
1,554,993 + MPMX19_01479 0.52 +1.5
1,554,993 + MPMX19_01479 0.52 +0.0
1,554,993 + MPMX19_01479 0.52 -0.9
1,554,993 + MPMX19_01479 0.52 -1.0
1,554,993 + MPMX19_01479 0.52 +2.0
1,554,993 + MPMX19_01479 0.52 +0.6
1,554,993 + MPMX19_01479 0.52 -0.4
1,554,993 + MPMX19_01479 0.52 +0.1
1,554,993 + MPMX19_01479 0.52 +0.1
1,554,993 + MPMX19_01479 0.52 -0.5
1,554,993 + MPMX19_01479 0.52 -2.0
1,554,994 - MPMX19_01479 0.52 -0.5
1,554,994 - MPMX19_01479 0.52 -0.3
1,554,994 - MPMX19_01479 0.52 -0.3
1,554,994 - MPMX19_01479 0.52 +0.6
1,554,994 - MPMX19_01479 0.52 +0.4
1,554,994 - MPMX19_01479 0.52 -0.6
1,555,550 + MPMX19_01480 0.12 +0.4
1,555,550 + MPMX19_01480 0.12 -1.0
1,555,550 + MPMX19_01480 0.12 -1.3
1,555,550 + MPMX19_01480 0.12 +0.4
1,555,550 + MPMX19_01480 0.12 -0.8
1,555,550 + MPMX19_01480 0.12 -0.9
1,555,550 + MPMX19_01480 0.12 +0.2
1,555,550 + MPMX19_01480 0.12 +0.6
1,555,550 + MPMX19_01480 0.12 +0.3
1,555,550 + MPMX19_01480 0.12 -1.1
1,555,551 - MPMX19_01480 0.12 -0.6
1,555,551 - MPMX19_01480 0.12 -1.9
1,555,551 - MPMX19_01480 0.12 -1.2
1,555,551 - MPMX19_01480 0.12 -1.4
1,555,551 - MPMX19_01480 0.12 +0.5
1,555,551 - MPMX19_01480 0.12 -0.1
1,556,071 + MPMX19_01480 0.90 +1.3
1,556,071 + MPMX19_01480 0.90 +0.6
1,556,071 + MPMX19_01480 0.90 -1.1
1,556,072 - -0.2
1,556,138 + -0.6
1,556,138 + +0.9
1,556,138 + +0.7
1,556,138 + -0.6
1,556,138 + -0.8
1,556,138 + -0.1
1,556,138 + +1.4
1,556,139 - -0.3
1,556,139 - -1.6
1,556,139 - -0.6
1,556,139 - -1.5
1,556,139 - -1.2
1,556,139 - +0.9
1,556,139 - +0.0
1,556,139 - -0.6
1,556,139 - -1.0
1,556,139 - -0.4
1,556,209 + +0.4
1,556,209 + +0.1
1,556,209 + -0.5
1,556,249 + MPMX19_01481 0.11 +0.5
1,556,249 + MPMX19_01481 0.11 +1.7
1,556,249 + MPMX19_01481 0.11 -0.9
1,556,249 + MPMX19_01481 0.11 -0.2
1,556,249 + MPMX19_01481 0.11 -2.0
1,556,249 + MPMX19_01481 0.11 -0.0
1,556,250 - MPMX19_01481 0.11 -2.2
1,556,250 - MPMX19_01481 0.11 -0.4
1,556,250 - MPMX19_01481 0.11 -0.6
1,556,250 - MPMX19_01481 0.11 -1.0
1,556,250 - MPMX19_01481 0.11 -1.8
1,556,250 - MPMX19_01481 0.11 -0.8
1,556,250 - MPMX19_01481 0.11 -1.5
1,556,250 - MPMX19_01481 0.11 -0.2
1,556,250 - MPMX19_01481 0.11 -0.5
1,556,250 - MPMX19_01481 0.11 -0.2

Or see this region's nucleotide sequence