Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_00890

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_00888 and MPMX19_00889 are separated by 21 nucleotidesMPMX19_00889 and MPMX19_00890 are separated by 72 nucleotidesMPMX19_00890 and MPMX19_00891 overlap by 4 nucleotidesMPMX19_00891 and MPMX19_00892 overlap by 23 nucleotides MPMX19_00888: MPMX19_00888 - Cytochrome c oxidase assembly protein CtaG, at 922,589 to 923,230 _00888 MPMX19_00889: MPMX19_00889 - Cytochrome c oxidase subunit 3, at 923,252 to 924,127 _00889 MPMX19_00890: MPMX19_00890 - hypothetical protein, at 924,200 to 924,571 _00890 MPMX19_00891: MPMX19_00891 - hypothetical protein, at 924,568 to 925,380 _00891 MPMX19_00892: MPMX19_00892 - Thermostable carboxypeptidase 1, at 925,358 to 926,845 _00892 Position (kb) 924 925Strain fitness (log2 ratio) -2 -1 0 1 2 3at 923.235 kb on + strandat 923.235 kb on + strandat 923.235 kb on + strandat 923.235 kb on + strandat 923.235 kb on + strandat 923.236 kb on - strandat 923.242 kb on + strandat 923.243 kb on - strandat 923.243 kb on - strandat 923.300 kb on + strandat 923.300 kb on + strandat 923.300 kb on + strandat 923.300 kb on + strandat 923.301 kb on - strandat 923.301 kb on - strandat 923.301 kb on - strandat 923.330 kb on + strandat 923.330 kb on + strandat 923.330 kb on + strandat 923.331 kb on - strandat 923.331 kb on - strandat 923.331 kb on - strandat 923.331 kb on - strandat 923.550 kb on - strand, within MPMX19_00889at 923.852 kb on + strand, within MPMX19_00889at 923.852 kb on + strand, within MPMX19_00889at 923.852 kb on + strand, within MPMX19_00889at 923.853 kb on - strand, within MPMX19_00889at 923.853 kb on - strand, within MPMX19_00889at 923.853 kb on - strand, within MPMX19_00889at 923.853 kb on - strand, within MPMX19_00889at 923.853 kb on - strand, within MPMX19_00889at 923.853 kb on - strand, within MPMX19_00889at 923.853 kb on - strand, within MPMX19_00889at 923.858 kb on + strand, within MPMX19_00889at 923.858 kb on + strand, within MPMX19_00889at 923.858 kb on + strand, within MPMX19_00889at 923.858 kb on + strand, within MPMX19_00889at 923.858 kb on + strand, within MPMX19_00889at 923.858 kb on + strand, within MPMX19_00889at 923.858 kb on + strand, within MPMX19_00889at 923.858 kb on + strand, within MPMX19_00889at 923.858 kb on + strand, within MPMX19_00889at 923.858 kb on + strand, within MPMX19_00889at 923.858 kb on + strand, within MPMX19_00889at 923.858 kb on + strand, within MPMX19_00889at 923.858 kb on + strand, within MPMX19_00889at 923.858 kb on + strand, within MPMX19_00889at 923.859 kb on - strand, within MPMX19_00889at 923.859 kb on - strand, within MPMX19_00889at 923.859 kb on - strand, within MPMX19_00889at 923.859 kb on - strand, within MPMX19_00889at 923.859 kb on - strand, within MPMX19_00889at 923.859 kb on - strand, within MPMX19_00889at 923.859 kb on - strand, within MPMX19_00889at 923.859 kb on - strand, within MPMX19_00889at 923.909 kb on + strand, within MPMX19_00889at 923.909 kb on + strand, within MPMX19_00889at 923.909 kb on + strand, within MPMX19_00889at 923.910 kb on - strand, within MPMX19_00889at 923.910 kb on - strand, within MPMX19_00889at 923.910 kb on - strand, within MPMX19_00889at 923.910 kb on - strand, within MPMX19_00889at 923.910 kb on - strand, within MPMX19_00889at 923.910 kb on - strand, within MPMX19_00889at 923.910 kb on - strand, within MPMX19_00889at 923.910 kb on - strand, within MPMX19_00889at 923.910 kb on - strand, within MPMX19_00889at 923.910 kb on - strand, within MPMX19_00889at 923.910 kb on - strand, within MPMX19_00889at 923.910 kb on - strand, within MPMX19_00889at 924.038 kb on + strand, within MPMX19_00889at 924.038 kb on + strand, within MPMX19_00889at 924.039 kb on - strand, within MPMX19_00889at 924.086 kb on + strandat 924.086 kb on + strandat 924.087 kb on - strandat 924.087 kb on - strandat 924.087 kb on - strandat 924.163 kb on + strandat 924.163 kb on + strandat 924.163 kb on + strandat 924.163 kb on + strandat 924.164 kb on - strandat 924.164 kb on - strandat 924.212 kb on + strandat 924.213 kb on - strandat 924.213 kb on - strandat 924.281 kb on + strand, within MPMX19_00890at 924.281 kb on + strand, within MPMX19_00890at 924.281 kb on + strand, within MPMX19_00890at 924.281 kb on + strand, within MPMX19_00890at 924.281 kb on + strand, within MPMX19_00890at 924.282 kb on - strand, within MPMX19_00890at 924.282 kb on - strand, within MPMX19_00890at 924.282 kb on - strand, within MPMX19_00890at 924.291 kb on - strand, within MPMX19_00890at 924.534 kb on - strandat 924.534 kb on - strandat 924.828 kb on + strand, within MPMX19_00891at 924.874 kb on + strand, within MPMX19_00891at 924.874 kb on + strand, within MPMX19_00891at 924.875 kb on - strand, within MPMX19_00891at 925.124 kb on + strand, within MPMX19_00891at 925.261 kb on + strand, within MPMX19_00891at 925.261 kb on + strand, within MPMX19_00891at 925.261 kb on + strand, within MPMX19_00891at 925.261 kb on + strand, within MPMX19_00891at 925.261 kb on + strand, within MPMX19_00891at 925.261 kb on + strand, within MPMX19_00891at 925.261 kb on + strand, within MPMX19_00891at 925.261 kb on + strand, within MPMX19_00891at 925.261 kb on + strand, within MPMX19_00891at 925.261 kb on + strand, within MPMX19_00891at 925.261 kb on + strand, within MPMX19_00891at 925.262 kb on - strand, within MPMX19_00891at 925.262 kb on - strand, within MPMX19_00891at 925.262 kb on - strand, within MPMX19_00891at 925.262 kb on - strand, within MPMX19_00891at 925.262 kb on - strand, within MPMX19_00891at 925.262 kb on - strand, within MPMX19_00891at 925.262 kb on - strand, within MPMX19_00891at 925.262 kb on - strand, within MPMX19_00891at 925.262 kb on - strand, within MPMX19_00891at 925.262 kb on - strand, within MPMX19_00891at 925.262 kb on - strand, within MPMX19_00891at 925.277 kb on - strand, within MPMX19_00891at 925.306 kb on + strandat 925.306 kb on + strandat 925.306 kb on + strandat 925.306 kb on + strandat 925.306 kb on + strandat 925.307 kb on - strandat 925.307 kb on - strandat 925.307 kb on - strandat 925.367 kb on + strandat 925.367 kb on + strandat 925.367 kb on + strandat 925.367 kb on + strandat 925.367 kb on + strandat 925.367 kb on + strandat 925.367 kb on + strandat 925.367 kb on + strandat 925.368 kb on - strandat 925.368 kb on - strandat 925.368 kb on - strandat 925.368 kb on - strandat 925.368 kb on - strandat 925.368 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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923,235 + -0.8
923,235 + -1.1
923,235 + +0.1
923,235 + -0.5
923,235 + -0.6
923,236 - -0.5
923,242 + +0.9
923,243 - -0.3
923,243 - +0.2
923,300 + -1.3
923,300 + -1.5
923,300 + +0.6
923,300 + -0.8
923,301 - -0.3
923,301 - -0.5
923,301 - -0.4
923,330 + -1.2
923,330 + -0.3
923,330 + -0.2
923,331 - -0.4
923,331 - -1.1
923,331 - -0.9
923,331 - -1.0
923,550 - MPMX19_00889 0.34 +0.4
923,852 + MPMX19_00889 0.68 +0.7
923,852 + MPMX19_00889 0.68 +0.7
923,852 + MPMX19_00889 0.68 +1.2
923,853 - MPMX19_00889 0.69 +0.1
923,853 - MPMX19_00889 0.69 -1.1
923,853 - MPMX19_00889 0.69 +0.1
923,853 - MPMX19_00889 0.69 +0.9
923,853 - MPMX19_00889 0.69 +0.7
923,853 - MPMX19_00889 0.69 -0.4
923,853 - MPMX19_00889 0.69 +0.8
923,858 + MPMX19_00889 0.69 +1.6
923,858 + MPMX19_00889 0.69 +0.4
923,858 + MPMX19_00889 0.69 -1.1
923,858 + MPMX19_00889 0.69 +1.6
923,858 + MPMX19_00889 0.69 -0.1
923,858 + MPMX19_00889 0.69 -0.1
923,858 + MPMX19_00889 0.69 -0.4
923,858 + MPMX19_00889 0.69 -0.5
923,858 + MPMX19_00889 0.69 -0.2
923,858 + MPMX19_00889 0.69 +0.6
923,858 + MPMX19_00889 0.69 -0.8
923,858 + MPMX19_00889 0.69 +0.4
923,858 + MPMX19_00889 0.69 -0.2
923,858 + MPMX19_00889 0.69 -0.7
923,859 - MPMX19_00889 0.69 +0.9
923,859 - MPMX19_00889 0.69 -1.5
923,859 - MPMX19_00889 0.69 +1.2
923,859 - MPMX19_00889 0.69 +0.1
923,859 - MPMX19_00889 0.69 +0.7
923,859 - MPMX19_00889 0.69 +0.9
923,859 - MPMX19_00889 0.69 -1.5
923,859 - MPMX19_00889 0.69 -0.1
923,909 + MPMX19_00889 0.75 -1.5
923,909 + MPMX19_00889 0.75 -1.9
923,909 + MPMX19_00889 0.75 -1.2
923,910 - MPMX19_00889 0.75 -1.1
923,910 - MPMX19_00889 0.75 -0.4
923,910 - MPMX19_00889 0.75 -0.3
923,910 - MPMX19_00889 0.75 -1.1
923,910 - MPMX19_00889 0.75 -0.1
923,910 - MPMX19_00889 0.75 +0.6
923,910 - MPMX19_00889 0.75 +0.7
923,910 - MPMX19_00889 0.75 -1.0
923,910 - MPMX19_00889 0.75 -0.1
923,910 - MPMX19_00889 0.75 -0.5
923,910 - MPMX19_00889 0.75 -0.7
923,910 - MPMX19_00889 0.75 +0.3
924,038 + MPMX19_00889 0.90 +0.4
924,038 + MPMX19_00889 0.90 +0.5
924,039 - MPMX19_00889 0.90 +0.2
924,086 + +1.2
924,086 + -0.9
924,087 - +0.9
924,087 - +1.4
924,087 - -1.4
924,163 + -0.6
924,163 + -1.4
924,163 + -0.7
924,163 + -1.1
924,164 - +1.9
924,164 - -0.6
924,212 + -0.5
924,213 - -0.6
924,213 - -0.9
924,281 + MPMX19_00890 0.22 +3.4
924,281 + MPMX19_00890 0.22 -1.2
924,281 + MPMX19_00890 0.22 +0.4
924,281 + MPMX19_00890 0.22 -1.5
924,281 + MPMX19_00890 0.22 -1.5
924,282 - MPMX19_00890 0.22 -0.1
924,282 - MPMX19_00890 0.22 +0.1
924,282 - MPMX19_00890 0.22 -0.9
924,291 - MPMX19_00890 0.24 -1.6
924,534 - -0.5
924,534 - -1.4
924,828 + MPMX19_00891 0.32 -2.2
924,874 + MPMX19_00891 0.38 -0.1
924,874 + MPMX19_00891 0.38 -0.6
924,875 - MPMX19_00891 0.38 -0.6
925,124 + MPMX19_00891 0.68 +1.9
925,261 + MPMX19_00891 0.85 -0.4
925,261 + MPMX19_00891 0.85 +0.6
925,261 + MPMX19_00891 0.85 -0.8
925,261 + MPMX19_00891 0.85 +1.7
925,261 + MPMX19_00891 0.85 +2.5
925,261 + MPMX19_00891 0.85 +1.4
925,261 + MPMX19_00891 0.85 -2.0
925,261 + MPMX19_00891 0.85 -0.6
925,261 + MPMX19_00891 0.85 -1.9
925,261 + MPMX19_00891 0.85 -0.8
925,261 + MPMX19_00891 0.85 +1.5
925,262 - MPMX19_00891 0.85 -1.1
925,262 - MPMX19_00891 0.85 -0.3
925,262 - MPMX19_00891 0.85 +0.9
925,262 - MPMX19_00891 0.85 -1.1
925,262 - MPMX19_00891 0.85 -1.0
925,262 - MPMX19_00891 0.85 -0.1
925,262 - MPMX19_00891 0.85 +0.6
925,262 - MPMX19_00891 0.85 +0.1
925,262 - MPMX19_00891 0.85 -1.0
925,262 - MPMX19_00891 0.85 -0.3
925,262 - MPMX19_00891 0.85 +1.1
925,277 - MPMX19_00891 0.87 -0.9
925,306 + +0.7
925,306 + +0.8
925,306 + -0.9
925,306 + +0.9
925,306 + +1.3
925,307 - -0.4
925,307 - -0.2
925,307 - -0.1
925,367 + +0.1
925,367 + +0.3
925,367 + -0.3
925,367 + +0.1
925,367 + +1.6
925,367 + +0.9
925,367 + -1.1
925,367 + -1.5
925,368 - +0.6
925,368 - -1.4
925,368 - -0.2
925,368 - -0.8
925,368 - +0.5
925,368 - -0.6

Or see this region's nucleotide sequence