Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_00831

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_00829 and MPMX19_00830 overlap by 1 nucleotidesMPMX19_00830 and MPMX19_00831 are separated by 65 nucleotidesMPMX19_00831 and MPMX19_00832 are separated by 37 nucleotidesMPMX19_00832 and MPMX19_00833 are separated by 304 nucleotides MPMX19_00829: MPMX19_00829 - hypothetical protein, at 861,345 to 861,641 _00829 MPMX19_00830: MPMX19_00830 - Toxin FitB, at 861,641 to 862,072 _00830 MPMX19_00831: MPMX19_00831 - GMP synthase [glutamine-hydrolyzing], at 862,138 to 863,706 _00831 MPMX19_00832: MPMX19_00832 - hypothetical protein, at 863,744 to 864,322 _00832 MPMX19_00833: MPMX19_00833 - Lipopolysaccharide export system permease protein LptG, at 864,627 to 865,721 _00833 Position (kb) 862 863 864Strain fitness (log2 ratio) -2 -1 0 1 2 3at 861.318 kb on + strandat 861.318 kb on + strandat 861.319 kb on - strandat 861.319 kb on - strandat 861.319 kb on - strandat 861.365 kb on + strandat 861.365 kb on + strandat 861.365 kb on + strandat 861.365 kb on + strandat 861.365 kb on + strandat 861.365 kb on + strandat 861.365 kb on + strandat 861.366 kb on - strandat 861.366 kb on - strandat 861.366 kb on - strandat 861.366 kb on - strandat 861.366 kb on - strandat 861.366 kb on - strandat 861.366 kb on - strandat 861.452 kb on + strand, within MPMX19_00829at 861.666 kb on + strandat 861.666 kb on + strandat 861.666 kb on + strandat 861.666 kb on + strandat 861.667 kb on - strandat 861.667 kb on - strandat 861.667 kb on - strandat 861.676 kb on + strandat 861.743 kb on + strand, within MPMX19_00830at 861.743 kb on + strand, within MPMX19_00830at 861.743 kb on + strand, within MPMX19_00830at 861.743 kb on + strand, within MPMX19_00830at 861.744 kb on - strand, within MPMX19_00830at 861.744 kb on - strand, within MPMX19_00830at 861.744 kb on - strand, within MPMX19_00830at 861.744 kb on - strand, within MPMX19_00830at 861.744 kb on - strand, within MPMX19_00830at 861.782 kb on - strand, within MPMX19_00830at 861.783 kb on + strand, within MPMX19_00830at 861.783 kb on + strand, within MPMX19_00830at 861.783 kb on + strand, within MPMX19_00830at 861.783 kb on + strand, within MPMX19_00830at 861.783 kb on + strand, within MPMX19_00830at 861.783 kb on + strand, within MPMX19_00830at 861.783 kb on + strand, within MPMX19_00830at 861.783 kb on + strand, within MPMX19_00830at 861.784 kb on - strand, within MPMX19_00830at 861.784 kb on - strand, within MPMX19_00830at 861.784 kb on - strand, within MPMX19_00830at 861.784 kb on - strand, within MPMX19_00830at 861.784 kb on - strand, within MPMX19_00830at 861.784 kb on - strand, within MPMX19_00830at 861.903 kb on + strand, within MPMX19_00830at 861.999 kb on + strand, within MPMX19_00830at 862.000 kb on - strand, within MPMX19_00830at 862.127 kb on - strandat 863.803 kb on - strand, within MPMX19_00832at 863.877 kb on + strand, within MPMX19_00832at 863.877 kb on + strand, within MPMX19_00832at 863.877 kb on + strand, within MPMX19_00832at 863.877 kb on + strand, within MPMX19_00832at 863.878 kb on - strand, within MPMX19_00832at 863.878 kb on - strand, within MPMX19_00832at 863.878 kb on - strand, within MPMX19_00832at 863.985 kb on + strand, within MPMX19_00832at 864.003 kb on - strand, within MPMX19_00832at 864.009 kb on + strand, within MPMX19_00832at 864.231 kb on + strand, within MPMX19_00832at 864.231 kb on + strand, within MPMX19_00832at 864.231 kb on + strand, within MPMX19_00832at 864.231 kb on + strand, within MPMX19_00832at 864.232 kb on - strand, within MPMX19_00832at 864.232 kb on - strand, within MPMX19_00832at 864.232 kb on - strand, within MPMX19_00832at 864.232 kb on - strand, within MPMX19_00832at 864.232 kb on - strand, within MPMX19_00832at 864.232 kb on - strand, within MPMX19_00832at 864.417 kb on + strandat 864.417 kb on + strandat 864.417 kb on + strandat 864.417 kb on + strandat 864.417 kb on + strandat 864.418 kb on - strandat 864.418 kb on - strandat 864.418 kb on - strandat 864.418 kb on - strandat 864.508 kb on + strandat 864.508 kb on + strandat 864.508 kb on + strandat 864.508 kb on + strandat 864.508 kb on + strandat 864.630 kb on + strandat 864.630 kb on + strandat 864.630 kb on + strandat 864.630 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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861,318 + -0.1
861,318 + -1.0
861,319 - +0.2
861,319 - +2.0
861,319 - +0.5
861,365 + -1.2
861,365 + -0.0
861,365 + +1.4
861,365 + +0.5
861,365 + -1.0
861,365 + -0.6
861,365 + +0.1
861,366 - -0.4
861,366 - -1.5
861,366 - -0.6
861,366 - +0.4
861,366 - -0.2
861,366 - -2.1
861,366 - -0.3
861,452 + MPMX19_00829 0.36 -0.9
861,666 + +0.2
861,666 + -0.1
861,666 + +0.8
861,666 + -2.0
861,667 - -0.5
861,667 - -0.4
861,667 - -0.5
861,676 + +0.6
861,743 + MPMX19_00830 0.24 -0.0
861,743 + MPMX19_00830 0.24 +0.5
861,743 + MPMX19_00830 0.24 -0.4
861,743 + MPMX19_00830 0.24 -1.6
861,744 - MPMX19_00830 0.24 +0.5
861,744 - MPMX19_00830 0.24 +0.5
861,744 - MPMX19_00830 0.24 +0.3
861,744 - MPMX19_00830 0.24 -1.4
861,744 - MPMX19_00830 0.24 +1.0
861,782 - MPMX19_00830 0.33 -1.4
861,783 + MPMX19_00830 0.33 -0.0
861,783 + MPMX19_00830 0.33 +1.1
861,783 + MPMX19_00830 0.33 +0.3
861,783 + MPMX19_00830 0.33 -0.7
861,783 + MPMX19_00830 0.33 +0.1
861,783 + MPMX19_00830 0.33 -1.4
861,783 + MPMX19_00830 0.33 -0.4
861,783 + MPMX19_00830 0.33 -0.3
861,784 - MPMX19_00830 0.33 +0.2
861,784 - MPMX19_00830 0.33 +0.0
861,784 - MPMX19_00830 0.33 -0.1
861,784 - MPMX19_00830 0.33 +0.1
861,784 - MPMX19_00830 0.33 +3.3
861,784 - MPMX19_00830 0.33 +0.3
861,903 + MPMX19_00830 0.61 -0.3
861,999 + MPMX19_00830 0.83 -0.4
862,000 - MPMX19_00830 0.83 +0.5
862,127 - -0.2
863,803 - MPMX19_00832 0.10 -0.9
863,877 + MPMX19_00832 0.23 +0.1
863,877 + MPMX19_00832 0.23 +0.6
863,877 + MPMX19_00832 0.23 -0.0
863,877 + MPMX19_00832 0.23 +0.8
863,878 - MPMX19_00832 0.23 -1.6
863,878 - MPMX19_00832 0.23 -0.9
863,878 - MPMX19_00832 0.23 -0.1
863,985 + MPMX19_00832 0.42 -1.6
864,003 - MPMX19_00832 0.45 -1.0
864,009 + MPMX19_00832 0.46 +0.6
864,231 + MPMX19_00832 0.84 -2.1
864,231 + MPMX19_00832 0.84 +0.6
864,231 + MPMX19_00832 0.84 +0.0
864,231 + MPMX19_00832 0.84 +0.6
864,232 - MPMX19_00832 0.84 -1.6
864,232 - MPMX19_00832 0.84 -0.4
864,232 - MPMX19_00832 0.84 +1.0
864,232 - MPMX19_00832 0.84 -0.0
864,232 - MPMX19_00832 0.84 -0.3
864,232 - MPMX19_00832 0.84 -0.8
864,417 + +0.5
864,417 + +1.1
864,417 + +1.0
864,417 + +0.0
864,417 + -0.5
864,418 - -0.0
864,418 - +0.5
864,418 - +0.4
864,418 - +1.4
864,508 + -0.2
864,508 + -0.1
864,508 + +1.0
864,508 + -1.1
864,508 + +0.1
864,630 + -1.9
864,630 + +0.5
864,630 + -1.5
864,630 + -1.4

Or see this region's nucleotide sequence