Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_00818

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_00817 and MPMX19_00818 are separated by 5 nucleotidesMPMX19_00818 and MPMX19_00819 are separated by 117 nucleotidesMPMX19_00819 and MPMX19_00820 are separated by 70 nucleotides MPMX19_00817: MPMX19_00817 - Penicillin-binding protein 1C, at 844,391 to 846,430 _00817 MPMX19_00818: MPMX19_00818 - hypothetical protein, at 846,436 to 846,708 _00818 MPMX19_00819: MPMX19_00819 - hypothetical protein, at 846,826 to 847,212 _00819 MPMX19_00820: MPMX19_00820 - Multicopper oxidase MmcO, at 847,283 to 848,896 _00820 Position (kb) 846 847Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 845.717 kb on + strand, within MPMX19_00817at 845.718 kb on - strand, within MPMX19_00817at 845.718 kb on - strand, within MPMX19_00817at 845.921 kb on + strand, within MPMX19_00817at 845.921 kb on + strand, within MPMX19_00817at 845.922 kb on - strand, within MPMX19_00817at 845.922 kb on - strand, within MPMX19_00817at 845.922 kb on - strand, within MPMX19_00817at 845.922 kb on - strand, within MPMX19_00817at 845.922 kb on - strand, within MPMX19_00817at 845.963 kb on + strand, within MPMX19_00817at 845.963 kb on + strand, within MPMX19_00817at 845.963 kb on + strand, within MPMX19_00817at 845.964 kb on - strand, within MPMX19_00817at 845.964 kb on - strand, within MPMX19_00817at 845.964 kb on - strand, within MPMX19_00817at 845.964 kb on - strand, within MPMX19_00817at 845.964 kb on - strand, within MPMX19_00817at 845.964 kb on - strand, within MPMX19_00817at 845.964 kb on - strand, within MPMX19_00817at 845.965 kb on + strand, within MPMX19_00817at 845.965 kb on + strand, within MPMX19_00817at 845.965 kb on + strand, within MPMX19_00817at 845.965 kb on + strand, within MPMX19_00817at 845.966 kb on + strand, within MPMX19_00817at 845.966 kb on - strand, within MPMX19_00817at 845.966 kb on - strand, within MPMX19_00817at 846.017 kb on + strand, within MPMX19_00817at 846.017 kb on + strand, within MPMX19_00817at 846.018 kb on - strand, within MPMX19_00817at 846.018 kb on - strand, within MPMX19_00817at 846.018 kb on - strand, within MPMX19_00817at 846.438 kb on - strandat 846.530 kb on + strand, within MPMX19_00818at 846.530 kb on + strand, within MPMX19_00818at 846.530 kb on + strand, within MPMX19_00818at 846.530 kb on + strand, within MPMX19_00818at 846.531 kb on - strand, within MPMX19_00818at 846.531 kb on - strand, within MPMX19_00818at 846.531 kb on - strand, within MPMX19_00818at 846.531 kb on - strand, within MPMX19_00818at 846.682 kb on + strandat 846.682 kb on + strandat 846.682 kb on + strandat 846.682 kb on + strandat 846.682 kb on + strandat 846.682 kb on + strandat 846.682 kb on + strandat 846.682 kb on + strandat 846.683 kb on - strandat 846.683 kb on - strandat 846.683 kb on - strandat 846.683 kb on - strandat 846.683 kb on - strandat 846.683 kb on - strandat 846.683 kb on - strandat 846.683 kb on - strandat 846.683 kb on - strandat 846.684 kb on + strandat 846.684 kb on + strandat 846.684 kb on + strandat 846.684 kb on + strandat 846.684 kb on + strandat 846.684 kb on + strandat 846.684 kb on + strandat 846.684 kb on + strandat 846.684 kb on + strandat 846.684 kb on + strandat 846.684 kb on + strandat 846.685 kb on - strandat 846.685 kb on - strandat 846.685 kb on - strandat 846.685 kb on - strandat 846.685 kb on - strandat 846.685 kb on - strandat 846.685 kb on - strandat 846.685 kb on - strandat 846.685 kb on - strandat 846.724 kb on + strandat 846.725 kb on - strandat 846.725 kb on - strandat 846.738 kb on + strandat 846.738 kb on + strandat 846.738 kb on + strandat 846.738 kb on + strandat 846.738 kb on + strandat 846.738 kb on + strandat 846.738 kb on + strandat 846.739 kb on - strandat 846.739 kb on - strandat 846.739 kb on - strandat 846.739 kb on - strandat 846.739 kb on - strandat 846.739 kb on - strandat 846.739 kb on - strandat 846.739 kb on - strandat 846.739 kb on - strandat 846.739 kb on - strandat 846.739 kb on - strandat 846.739 kb on - strandat 846.739 kb on - strandat 846.739 kb on - strandat 846.783 kb on + strandat 846.783 kb on + strandat 846.784 kb on - strandat 846.784 kb on - strandat 846.790 kb on + strandat 846.791 kb on - strandat 846.791 kb on - strandat 846.791 kb on - strandat 847.490 kb on - strand, within MPMX19_00820at 847.592 kb on + strand, within MPMX19_00820at 847.592 kb on + strand, within MPMX19_00820at 847.592 kb on + strand, within MPMX19_00820at 847.592 kb on + strand, within MPMX19_00820at 847.592 kb on + strand, within MPMX19_00820at 847.592 kb on + strand, within MPMX19_00820at 847.593 kb on - strand, within MPMX19_00820at 847.593 kb on - strand, within MPMX19_00820at 847.593 kb on - strand, within MPMX19_00820at 847.593 kb on - strand, within MPMX19_00820at 847.593 kb on - strand, within MPMX19_00820at 847.593 kb on - strand, within MPMX19_00820at 847.593 kb on - strand, within MPMX19_00820at 847.593 kb on - strand, within MPMX19_00820at 847.593 kb on - strand, within MPMX19_00820at 847.593 kb on - strand, within MPMX19_00820at 847.593 kb on - strand, within MPMX19_00820

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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845,717 + MPMX19_00817 0.65 -1.0
845,718 - MPMX19_00817 0.65 -1.0
845,718 - MPMX19_00817 0.65 +0.2
845,921 + MPMX19_00817 0.75 +0.8
845,921 + MPMX19_00817 0.75 -1.6
845,922 - MPMX19_00817 0.75 -1.3
845,922 - MPMX19_00817 0.75 +0.5
845,922 - MPMX19_00817 0.75 -0.6
845,922 - MPMX19_00817 0.75 +0.6
845,922 - MPMX19_00817 0.75 -0.6
845,963 + MPMX19_00817 0.77 +1.3
845,963 + MPMX19_00817 0.77 +1.4
845,963 + MPMX19_00817 0.77 +0.6
845,964 - MPMX19_00817 0.77 -0.8
845,964 - MPMX19_00817 0.77 -0.1
845,964 - MPMX19_00817 0.77 -1.0
845,964 - MPMX19_00817 0.77 -1.0
845,964 - MPMX19_00817 0.77 +1.2
845,964 - MPMX19_00817 0.77 +0.9
845,964 - MPMX19_00817 0.77 -0.7
845,965 + MPMX19_00817 0.77 +0.4
845,965 + MPMX19_00817 0.77 -0.1
845,965 + MPMX19_00817 0.77 +0.4
845,965 + MPMX19_00817 0.77 -0.2
845,966 + MPMX19_00817 0.77 +0.3
845,966 - MPMX19_00817 0.77 +0.2
845,966 - MPMX19_00817 0.77 -0.7
846,017 + MPMX19_00817 0.80 +1.0
846,017 + MPMX19_00817 0.80 +0.4
846,018 - MPMX19_00817 0.80 +0.5
846,018 - MPMX19_00817 0.80 +0.4
846,018 - MPMX19_00817 0.80 +0.2
846,438 - -0.6
846,530 + MPMX19_00818 0.34 -0.6
846,530 + MPMX19_00818 0.34 -0.0
846,530 + MPMX19_00818 0.34 -0.8
846,530 + MPMX19_00818 0.34 -2.0
846,531 - MPMX19_00818 0.35 -0.4
846,531 - MPMX19_00818 0.35 -0.6
846,531 - MPMX19_00818 0.35 -2.8
846,531 - MPMX19_00818 0.35 -0.6
846,682 + -2.0
846,682 + -0.7
846,682 + -0.6
846,682 + -1.5
846,682 + -2.3
846,682 + -0.2
846,682 + +0.3
846,682 + -1.0
846,683 - -0.4
846,683 - -0.2
846,683 - +0.0
846,683 - -0.4
846,683 - -1.4
846,683 - +0.5
846,683 - +1.4
846,683 - +0.5
846,683 - -0.4
846,684 + -0.4
846,684 + -0.8
846,684 + +0.8
846,684 + -0.0
846,684 + -1.0
846,684 + -0.0
846,684 + -0.3
846,684 + -0.7
846,684 + -0.6
846,684 + -1.8
846,684 + -0.2
846,685 - -0.4
846,685 - +0.0
846,685 - -1.7
846,685 - +0.1
846,685 - -0.3
846,685 - +1.0
846,685 - +0.0
846,685 - +0.2
846,685 - -0.4
846,724 + +1.5
846,725 - +0.2
846,725 - -1.9
846,738 + -0.2
846,738 + +1.4
846,738 + -0.8
846,738 + -0.9
846,738 + +0.4
846,738 + +0.1
846,738 + +1.0
846,739 - -0.7
846,739 - +0.2
846,739 - -1.1
846,739 - -2.4
846,739 - -0.8
846,739 - -0.4
846,739 - -0.0
846,739 - -0.4
846,739 - -1.2
846,739 - -1.4
846,739 - -0.4
846,739 - -0.5
846,739 - +1.1
846,739 - +1.2
846,783 + +2.0
846,783 + -1.5
846,784 - -1.4
846,784 - -0.2
846,790 + +0.4
846,791 - -0.5
846,791 - -0.4
846,791 - +0.4
847,490 - MPMX19_00820 0.13 +0.8
847,592 + MPMX19_00820 0.19 -1.0
847,592 + MPMX19_00820 0.19 +0.4
847,592 + MPMX19_00820 0.19 +0.0
847,592 + MPMX19_00820 0.19 -0.8
847,592 + MPMX19_00820 0.19 +0.4
847,592 + MPMX19_00820 0.19 -1.4
847,593 - MPMX19_00820 0.19 +1.2
847,593 - MPMX19_00820 0.19 +1.0
847,593 - MPMX19_00820 0.19 -0.8
847,593 - MPMX19_00820 0.19 -0.4
847,593 - MPMX19_00820 0.19 -0.4
847,593 - MPMX19_00820 0.19 -1.5
847,593 - MPMX19_00820 0.19 +1.3
847,593 - MPMX19_00820 0.19 -1.0
847,593 - MPMX19_00820 0.19 -0.3
847,593 - MPMX19_00820 0.19 -0.8
847,593 - MPMX19_00820 0.19 -1.3

Or see this region's nucleotide sequence