Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_00773

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_00772 and MPMX19_00773 are separated by 135 nucleotidesMPMX19_00773 and MPMX19_00774 are separated by 25 nucleotides MPMX19_00772: MPMX19_00772 - hypothetical protein, at 790,715 to 791,101 _00772 MPMX19_00773: MPMX19_00773 - hypothetical protein, at 791,237 to 791,599 _00773 MPMX19_00774: MPMX19_00774 - hypothetical protein, at 791,625 to 793,262 _00774 Position (kb) 791 792Strain fitness (log2 ratio) -2 -1 0 1 2at 790.342 kb on + strandat 790.343 kb on - strandat 790.512 kb on + strandat 790.512 kb on + strandat 790.512 kb on + strandat 790.512 kb on + strandat 790.512 kb on + strandat 790.513 kb on - strandat 790.513 kb on - strandat 790.531 kb on + strandat 790.542 kb on + strandat 790.542 kb on + strandat 790.543 kb on - strandat 790.590 kb on - strandat 790.622 kb on + strandat 790.622 kb on + strandat 790.622 kb on + strandat 790.622 kb on + strandat 790.622 kb on + strandat 790.622 kb on + strandat 790.622 kb on + strandat 790.623 kb on - strandat 790.623 kb on - strandat 790.623 kb on - strandat 790.623 kb on - strandat 790.623 kb on - strandat 790.624 kb on + strandat 790.624 kb on + strandat 790.624 kb on + strandat 790.624 kb on + strandat 790.625 kb on - strandat 790.625 kb on - strandat 790.625 kb on - strandat 790.625 kb on - strandat 790.625 kb on - strandat 790.625 kb on - strandat 790.625 kb on - strandat 790.625 kb on - strandat 790.625 kb on - strandat 790.625 kb on - strandat 790.667 kb on + strandat 790.668 kb on - strandat 790.668 kb on - strandat 790.668 kb on - strandat 790.679 kb on - strandat 790.752 kb on - strandat 790.979 kb on - strand, within MPMX19_00772at 790.979 kb on - strand, within MPMX19_00772at 790.979 kb on - strand, within MPMX19_00772at 791.147 kb on + strandat 791.147 kb on + strandat 791.147 kb on + strandat 791.148 kb on - strandat 791.148 kb on - strandat 791.168 kb on + strandat 791.168 kb on + strandat 791.168 kb on + strandat 791.168 kb on + strandat 791.237 kb on - strandat 791.339 kb on + strand, within MPMX19_00773at 791.339 kb on + strand, within MPMX19_00773at 791.340 kb on - strand, within MPMX19_00773at 791.340 kb on - strand, within MPMX19_00773at 791.340 kb on - strand, within MPMX19_00773at 791.340 kb on - strand, within MPMX19_00773at 791.340 kb on - strand, within MPMX19_00773at 791.340 kb on - strand, within MPMX19_00773at 791.555 kb on + strand, within MPMX19_00773at 791.555 kb on + strand, within MPMX19_00773at 791.555 kb on + strand, within MPMX19_00773at 791.556 kb on - strand, within MPMX19_00773at 791.556 kb on - strand, within MPMX19_00773at 791.606 kb on + strandat 791.606 kb on + strandat 791.606 kb on + strandat 791.606 kb on + strandat 791.606 kb on + strandat 791.606 kb on + strandat 791.606 kb on + strandat 791.606 kb on + strandat 791.606 kb on + strandat 791.606 kb on + strandat 791.607 kb on - strandat 791.607 kb on - strandat 791.607 kb on - strandat 791.607 kb on - strandat 791.607 kb on - strandat 791.607 kb on - strandat 791.607 kb on - strandat 791.607 kb on - strandat 791.607 kb on - strandat 791.607 kb on - strandat 791.607 kb on - strandat 791.607 kb on - strandat 791.607 kb on - strandat 791.607 kb on - strandat 791.607 kb on - strandat 791.607 kb on - strandat 791.607 kb on - strandat 791.607 kb on - strandat 791.626 kb on + strandat 791.626 kb on + strandat 791.626 kb on + strandat 791.626 kb on + strandat 791.626 kb on + strandat 791.627 kb on - strandat 791.627 kb on - strandat 791.627 kb on - strandat 791.797 kb on + strand, within MPMX19_00774at 791.797 kb on + strand, within MPMX19_00774at 791.798 kb on - strand, within MPMX19_00774at 791.798 kb on - strand, within MPMX19_00774at 791.798 kb on - strand, within MPMX19_00774at 791.798 kb on - strand, within MPMX19_00774at 791.798 kb on - strand, within MPMX19_00774at 791.798 kb on - strand, within MPMX19_00774at 791.798 kb on - strand, within MPMX19_00774at 791.798 kb on - strand, within MPMX19_00774at 791.798 kb on - strand, within MPMX19_00774at 791.956 kb on + strand, within MPMX19_00774at 791.956 kb on + strand, within MPMX19_00774at 791.957 kb on - strand, within MPMX19_00774at 791.957 kb on - strand, within MPMX19_00774at 791.965 kb on + strand, within MPMX19_00774at 791.965 kb on + strand, within MPMX19_00774at 791.966 kb on - strand, within MPMX19_00774at 791.966 kb on - strand, within MPMX19_00774at 792.034 kb on + strand, within MPMX19_00774at 792.166 kb on + strand, within MPMX19_00774at 792.166 kb on + strand, within MPMX19_00774at 792.166 kb on + strand, within MPMX19_00774at 792.166 kb on + strand, within MPMX19_00774at 792.166 kb on + strand, within MPMX19_00774at 792.166 kb on + strand, within MPMX19_00774at 792.166 kb on + strand, within MPMX19_00774at 792.166 kb on + strand, within MPMX19_00774at 792.166 kb on + strand, within MPMX19_00774at 792.166 kb on + strand, within MPMX19_00774at 792.167 kb on - strand, within MPMX19_00774at 792.167 kb on - strand, within MPMX19_00774at 792.167 kb on - strand, within MPMX19_00774at 792.167 kb on - strand, within MPMX19_00774at 792.167 kb on - strand, within MPMX19_00774at 792.167 kb on - strand, within MPMX19_00774at 792.167 kb on - strand, within MPMX19_00774at 792.167 kb on - strand, within MPMX19_00774at 792.167 kb on - strand, within MPMX19_00774at 792.388 kb on + strand, within MPMX19_00774at 792.388 kb on + strand, within MPMX19_00774at 792.388 kb on + strand, within MPMX19_00774at 792.388 kb on + strand, within MPMX19_00774at 792.388 kb on + strand, within MPMX19_00774at 792.388 kb on + strand, within MPMX19_00774at 792.388 kb on + strand, within MPMX19_00774at 792.389 kb on - strand, within MPMX19_00774at 792.389 kb on - strand, within MPMX19_00774at 792.389 kb on - strand, within MPMX19_00774at 792.389 kb on - strand, within MPMX19_00774at 792.389 kb on - strand, within MPMX19_00774at 792.389 kb on - strand, within MPMX19_00774at 792.389 kb on - strand, within MPMX19_00774at 792.389 kb on - strand, within MPMX19_00774at 792.389 kb on - strand, within MPMX19_00774at 792.389 kb on - strand, within MPMX19_00774at 792.389 kb on - strand, within MPMX19_00774at 792.389 kb on - strand, within MPMX19_00774at 792.416 kb on + strand, within MPMX19_00774at 792.416 kb on + strand, within MPMX19_00774at 792.416 kb on + strand, within MPMX19_00774at 792.417 kb on - strand, within MPMX19_00774at 792.417 kb on - strand, within MPMX19_00774

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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790,342 + +0.3
790,343 - -1.9
790,512 + -0.7
790,512 + +0.4
790,512 + -1.1
790,512 + -0.0
790,512 + +0.6
790,513 - +0.2
790,513 - -1.3
790,531 + -0.0
790,542 + +0.1
790,542 + -0.2
790,543 - +0.6
790,590 - +0.8
790,622 + -0.4
790,622 + +1.0
790,622 + -0.8
790,622 + +2.0
790,622 + -0.6
790,622 + -0.4
790,622 + -1.0
790,623 - +0.3
790,623 - -0.8
790,623 - -0.2
790,623 - -0.9
790,623 - -2.2
790,624 + -0.3
790,624 + -0.2
790,624 + -1.3
790,624 + -0.0
790,625 - -0.5
790,625 - -0.4
790,625 - -0.7
790,625 - +0.8
790,625 - +0.2
790,625 - -1.5
790,625 - -0.4
790,625 - -2.1
790,625 - +0.4
790,625 - +0.4
790,667 + +0.3
790,668 - -2.1
790,668 - -0.3
790,668 - +1.0
790,679 - +0.4
790,752 - +0.3
790,979 - MPMX19_00772 0.68 -0.9
790,979 - MPMX19_00772 0.68 +0.1
790,979 - MPMX19_00772 0.68 -0.1
791,147 + -0.8
791,147 + -1.0
791,147 + -0.3
791,148 - -1.0
791,148 - -1.8
791,168 + -0.6
791,168 + +0.7
791,168 + -1.0
791,168 + +0.7
791,237 - +0.5
791,339 + MPMX19_00773 0.28 +0.7
791,339 + MPMX19_00773 0.28 +0.2
791,340 - MPMX19_00773 0.28 -0.6
791,340 - MPMX19_00773 0.28 -1.0
791,340 - MPMX19_00773 0.28 +0.2
791,340 - MPMX19_00773 0.28 +0.8
791,340 - MPMX19_00773 0.28 -0.6
791,340 - MPMX19_00773 0.28 -1.2
791,555 + MPMX19_00773 0.88 +0.2
791,555 + MPMX19_00773 0.88 -1.0
791,555 + MPMX19_00773 0.88 +0.2
791,556 - MPMX19_00773 0.88 +2.0
791,556 - MPMX19_00773 0.88 +0.0
791,606 + -0.8
791,606 + -1.0
791,606 + +0.4
791,606 + -0.4
791,606 + -1.5
791,606 + +0.2
791,606 + +0.8
791,606 + +0.6
791,606 + +0.4
791,606 + +0.2
791,607 - -0.4
791,607 - -0.5
791,607 - -1.9
791,607 - -0.4
791,607 - +0.2
791,607 - -0.4
791,607 - -0.2
791,607 - +0.3
791,607 - +0.5
791,607 - +1.2
791,607 - +1.0
791,607 - -1.6
791,607 - -0.2
791,607 - -0.2
791,607 - -0.3
791,607 - +0.2
791,607 - -0.0
791,607 - -0.2
791,626 + +0.5
791,626 + +0.3
791,626 + +1.1
791,626 + -0.3
791,626 + +0.1
791,627 - -0.8
791,627 - -1.8
791,627 - -1.3
791,797 + MPMX19_00774 0.11 -0.8
791,797 + MPMX19_00774 0.11 -0.8
791,798 - MPMX19_00774 0.11 -1.2
791,798 - MPMX19_00774 0.11 -1.0
791,798 - MPMX19_00774 0.11 +0.4
791,798 - MPMX19_00774 0.11 +0.2
791,798 - MPMX19_00774 0.11 -1.8
791,798 - MPMX19_00774 0.11 -0.8
791,798 - MPMX19_00774 0.11 -0.2
791,798 - MPMX19_00774 0.11 -0.3
791,798 - MPMX19_00774 0.11 +0.8
791,956 + MPMX19_00774 0.20 -1.8
791,956 + MPMX19_00774 0.20 -0.5
791,957 - MPMX19_00774 0.20 -1.0
791,957 - MPMX19_00774 0.20 -0.5
791,965 + MPMX19_00774 0.21 -1.1
791,965 + MPMX19_00774 0.21 +1.1
791,966 - MPMX19_00774 0.21 -0.0
791,966 - MPMX19_00774 0.21 -1.0
792,034 + MPMX19_00774 0.25 +0.7
792,166 + MPMX19_00774 0.33 -1.5
792,166 + MPMX19_00774 0.33 +0.6
792,166 + MPMX19_00774 0.33 +0.7
792,166 + MPMX19_00774 0.33 -0.5
792,166 + MPMX19_00774 0.33 -0.4
792,166 + MPMX19_00774 0.33 -1.5
792,166 + MPMX19_00774 0.33 +0.7
792,166 + MPMX19_00774 0.33 -2.2
792,166 + MPMX19_00774 0.33 +0.6
792,166 + MPMX19_00774 0.33 -0.3
792,167 - MPMX19_00774 0.33 +0.3
792,167 - MPMX19_00774 0.33 +0.7
792,167 - MPMX19_00774 0.33 +1.2
792,167 - MPMX19_00774 0.33 -1.1
792,167 - MPMX19_00774 0.33 -1.6
792,167 - MPMX19_00774 0.33 +1.1
792,167 - MPMX19_00774 0.33 +0.1
792,167 - MPMX19_00774 0.33 +0.7
792,167 - MPMX19_00774 0.33 +0.4
792,388 + MPMX19_00774 0.47 -0.3
792,388 + MPMX19_00774 0.47 -0.1
792,388 + MPMX19_00774 0.47 -0.6
792,388 + MPMX19_00774 0.47 -0.7
792,388 + MPMX19_00774 0.47 -0.8
792,388 + MPMX19_00774 0.47 -1.2
792,388 + MPMX19_00774 0.47 -1.3
792,389 - MPMX19_00774 0.47 -1.5
792,389 - MPMX19_00774 0.47 -1.0
792,389 - MPMX19_00774 0.47 +0.2
792,389 - MPMX19_00774 0.47 +0.6
792,389 - MPMX19_00774 0.47 -0.3
792,389 - MPMX19_00774 0.47 +0.9
792,389 - MPMX19_00774 0.47 -0.2
792,389 - MPMX19_00774 0.47 -0.7
792,389 - MPMX19_00774 0.47 -0.6
792,389 - MPMX19_00774 0.47 +1.0
792,389 - MPMX19_00774 0.47 -0.3
792,389 - MPMX19_00774 0.47 +0.8
792,416 + MPMX19_00774 0.48 +0.6
792,416 + MPMX19_00774 0.48 -1.9
792,416 + MPMX19_00774 0.48 -0.2
792,417 - MPMX19_00774 0.48 -0.3
792,417 - MPMX19_00774 0.48 -0.3

Or see this region's nucleotide sequence