Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_00655

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_00654 and MPMX19_00655 are separated by 562 nucleotidesMPMX19_00655 and MPMX19_00656 are separated by 39 nucleotides MPMX19_00654: MPMX19_00654 - hypothetical protein, at 673,187 to 673,834 _00654 MPMX19_00655: MPMX19_00655 - hypothetical protein, at 674,397 to 675,704 _00655 MPMX19_00656: MPMX19_00656 - Sensor histidine kinase RcsC, at 675,744 to 677,462 _00656 Position (kb) 674 675 676Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 673.557 kb on + strand, within MPMX19_00654at 673.557 kb on + strand, within MPMX19_00654at 673.557 kb on + strand, within MPMX19_00654at 673.557 kb on + strand, within MPMX19_00654at 673.557 kb on + strand, within MPMX19_00654at 673.557 kb on + strand, within MPMX19_00654at 673.557 kb on + strand, within MPMX19_00654at 673.557 kb on + strand, within MPMX19_00654at 673.557 kb on + strand, within MPMX19_00654at 673.557 kb on + strand, within MPMX19_00654at 673.557 kb on + strand, within MPMX19_00654at 673.557 kb on + strand, within MPMX19_00654at 673.557 kb on + strand, within MPMX19_00654at 673.557 kb on + strand, within MPMX19_00654at 673.557 kb on + strand, within MPMX19_00654at 673.557 kb on + strand, within MPMX19_00654at 673.557 kb on + strand, within MPMX19_00654at 673.557 kb on + strand, within MPMX19_00654at 673.557 kb on + strand, within MPMX19_00654at 673.557 kb on + strand, within MPMX19_00654at 673.557 kb on + strand, within MPMX19_00654at 673.557 kb on + strand, within MPMX19_00654at 673.557 kb on + strand, within MPMX19_00654at 673.557 kb on + strand, within MPMX19_00654at 673.557 kb on + strand, within MPMX19_00654at 673.558 kb on - strand, within MPMX19_00654at 673.558 kb on - strand, within MPMX19_00654at 673.558 kb on - strand, within MPMX19_00654at 673.558 kb on - strand, within MPMX19_00654at 673.558 kb on - strand, within MPMX19_00654at 673.558 kb on - strand, within MPMX19_00654at 673.558 kb on - strand, within MPMX19_00654at 673.558 kb on - strand, within MPMX19_00654at 673.558 kb on - strand, within MPMX19_00654at 673.558 kb on - strand, within MPMX19_00654at 673.558 kb on - strand, within MPMX19_00654at 673.558 kb on - strand, within MPMX19_00654at 673.558 kb on - strand, within MPMX19_00654at 673.558 kb on - strand, within MPMX19_00654at 673.558 kb on - strand, within MPMX19_00654at 673.558 kb on - strand, within MPMX19_00654at 673.558 kb on - strand, within MPMX19_00654at 673.558 kb on - strand, within MPMX19_00654at 673.558 kb on - strand, within MPMX19_00654at 673.558 kb on - strand, within MPMX19_00654at 673.558 kb on - strand, within MPMX19_00654at 673.558 kb on - strand, within MPMX19_00654at 673.558 kb on - strand, within MPMX19_00654at 673.558 kb on - strand, within MPMX19_00654at 673.558 kb on - strand, within MPMX19_00654at 673.558 kb on - strand, within MPMX19_00654at 673.558 kb on - strand, within MPMX19_00654at 673.575 kb on + strand, within MPMX19_00654at 673.575 kb on + strand, within MPMX19_00654at 673.575 kb on + strand, within MPMX19_00654at 673.576 kb on - strand, within MPMX19_00654at 673.576 kb on - strand, within MPMX19_00654at 673.848 kb on + strandat 673.848 kb on + strandat 673.849 kb on - strandat 673.849 kb on - strandat 673.849 kb on - strandat 673.849 kb on - strandat 673.929 kb on + strandat 673.930 kb on - strandat 673.978 kb on + strandat 673.978 kb on + strandat 673.978 kb on + strandat 673.979 kb on - strandat 673.979 kb on - strandat 673.979 kb on - strandat 674.017 kb on + strandat 674.125 kb on + strandat 674.126 kb on - strandat 674.135 kb on + strandat 674.136 kb on - strandat 674.163 kb on + strandat 674.163 kb on + strandat 674.164 kb on - strandat 674.164 kb on - strandat 674.193 kb on + strandat 674.228 kb on + strandat 674.370 kb on + strandat 674.370 kb on + strandat 674.370 kb on + strandat 674.370 kb on + strandat 674.370 kb on + strandat 674.370 kb on + strandat 674.370 kb on + strandat 674.370 kb on + strandat 674.370 kb on + strandat 674.370 kb on + strandat 674.371 kb on - strandat 674.371 kb on - strandat 674.371 kb on - strandat 674.371 kb on - strandat 674.371 kb on - strandat 674.371 kb on - strandat 674.371 kb on - strandat 674.371 kb on - strandat 675.438 kb on + strand, within MPMX19_00655at 675.438 kb on + strand, within MPMX19_00655at 675.438 kb on + strand, within MPMX19_00655at 675.438 kb on + strand, within MPMX19_00655at 675.438 kb on + strand, within MPMX19_00655at 675.438 kb on + strand, within MPMX19_00655at 675.439 kb on - strand, within MPMX19_00655at 675.439 kb on - strand, within MPMX19_00655at 675.439 kb on - strand, within MPMX19_00655at 675.439 kb on - strand, within MPMX19_00655at 675.439 kb on - strand, within MPMX19_00655at 675.439 kb on - strand, within MPMX19_00655at 675.439 kb on - strand, within MPMX19_00655at 675.439 kb on - strand, within MPMX19_00655at 675.439 kb on - strand, within MPMX19_00655at 675.439 kb on - strand, within MPMX19_00655at 675.439 kb on - strand, within MPMX19_00655at 675.439 kb on - strand, within MPMX19_00655at 675.439 kb on - strand, within MPMX19_00655at 675.745 kb on + strandat 675.745 kb on + strandat 675.746 kb on - strandat 675.877 kb on + strandat 675.877 kb on + strandat 675.877 kb on + strandat 675.877 kb on + strandat 675.877 kb on + strandat 675.877 kb on + strandat 675.877 kb on + strandat 675.877 kb on + strandat 675.877 kb on + strandat 675.877 kb on + strandat 675.877 kb on + strandat 675.878 kb on - strandat 675.878 kb on - strandat 675.878 kb on - strandat 675.878 kb on - strandat 675.878 kb on - strandat 675.878 kb on - strandat 675.878 kb on - strandat 675.878 kb on - strandat 675.878 kb on - strandat 675.878 kb on - strandat 675.878 kb on - strandat 675.878 kb on - strandat 675.878 kb on - strandat 676.300 kb on + strand, within MPMX19_00656at 676.300 kb on + strand, within MPMX19_00656at 676.300 kb on + strand, within MPMX19_00656at 676.300 kb on + strand, within MPMX19_00656at 676.301 kb on - strand, within MPMX19_00656at 676.301 kb on - strand, within MPMX19_00656at 676.301 kb on - strand, within MPMX19_00656

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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673,557 + MPMX19_00654 0.57 -0.9
673,557 + MPMX19_00654 0.57 -0.8
673,557 + MPMX19_00654 0.57 +0.3
673,557 + MPMX19_00654 0.57 -0.8
673,557 + MPMX19_00654 0.57 +0.4
673,557 + MPMX19_00654 0.57 -0.7
673,557 + MPMX19_00654 0.57 -0.4
673,557 + MPMX19_00654 0.57 +0.2
673,557 + MPMX19_00654 0.57 +2.6
673,557 + MPMX19_00654 0.57 -2.7
673,557 + MPMX19_00654 0.57 -0.2
673,557 + MPMX19_00654 0.57 -0.4
673,557 + MPMX19_00654 0.57 -0.4
673,557 + MPMX19_00654 0.57 -0.7
673,557 + MPMX19_00654 0.57 -0.4
673,557 + MPMX19_00654 0.57 +0.7
673,557 + MPMX19_00654 0.57 +0.8
673,557 + MPMX19_00654 0.57 +0.1
673,557 + MPMX19_00654 0.57 +1.2
673,557 + MPMX19_00654 0.57 -2.0
673,557 + MPMX19_00654 0.57 -0.4
673,557 + MPMX19_00654 0.57 -2.2
673,557 + MPMX19_00654 0.57 -0.0
673,557 + MPMX19_00654 0.57 -0.3
673,557 + MPMX19_00654 0.57 +0.7
673,558 - MPMX19_00654 0.57 -0.2
673,558 - MPMX19_00654 0.57 -0.5
673,558 - MPMX19_00654 0.57 -1.2
673,558 - MPMX19_00654 0.57 -0.5
673,558 - MPMX19_00654 0.57 -1.6
673,558 - MPMX19_00654 0.57 +0.4
673,558 - MPMX19_00654 0.57 -0.0
673,558 - MPMX19_00654 0.57 +0.6
673,558 - MPMX19_00654 0.57 +0.6
673,558 - MPMX19_00654 0.57 +0.3
673,558 - MPMX19_00654 0.57 -1.4
673,558 - MPMX19_00654 0.57 +0.3
673,558 - MPMX19_00654 0.57 -0.6
673,558 - MPMX19_00654 0.57 -1.3
673,558 - MPMX19_00654 0.57 +0.2
673,558 - MPMX19_00654 0.57 +0.1
673,558 - MPMX19_00654 0.57 +1.1
673,558 - MPMX19_00654 0.57 -0.4
673,558 - MPMX19_00654 0.57 -0.1
673,558 - MPMX19_00654 0.57 +1.1
673,558 - MPMX19_00654 0.57 -0.1
673,558 - MPMX19_00654 0.57 -0.3
673,558 - MPMX19_00654 0.57 -0.1
673,558 - MPMX19_00654 0.57 -0.6
673,558 - MPMX19_00654 0.57 -0.0
673,558 - MPMX19_00654 0.57 +1.4
673,558 - MPMX19_00654 0.57 +0.1
673,575 + MPMX19_00654 0.60 -0.0
673,575 + MPMX19_00654 0.60 -0.4
673,575 + MPMX19_00654 0.60 +0.4
673,576 - MPMX19_00654 0.60 -0.1
673,576 - MPMX19_00654 0.60 -1.2
673,848 + +1.5
673,848 + +0.7
673,849 - -1.4
673,849 - -1.0
673,849 - -0.4
673,849 - -0.9
673,929 + -0.9
673,930 - +2.0
673,978 + -0.6
673,978 + -0.4
673,978 + -0.2
673,979 - +1.7
673,979 - -0.4
673,979 - -2.0
674,017 + -1.6
674,125 + -0.6
674,126 - +0.6
674,135 + -0.4
674,136 - +0.1
674,163 + +0.2
674,163 + -1.2
674,164 - -0.7
674,164 - -0.0
674,193 + -0.0
674,228 + +0.0
674,370 + -1.0
674,370 + -0.8
674,370 + -0.0
674,370 + -0.2
674,370 + -1.4
674,370 + -0.6
674,370 + -0.8
674,370 + +0.6
674,370 + +0.2
674,370 + -0.5
674,371 - -1.2
674,371 - +1.0
674,371 - +0.6
674,371 - -1.0
674,371 - -0.6
674,371 - -0.4
674,371 - -0.5
674,371 - +0.6
675,438 + MPMX19_00655 0.80 -1.5
675,438 + MPMX19_00655 0.80 -0.2
675,438 + MPMX19_00655 0.80 -0.3
675,438 + MPMX19_00655 0.80 -0.0
675,438 + MPMX19_00655 0.80 -0.8
675,438 + MPMX19_00655 0.80 -1.0
675,439 - MPMX19_00655 0.80 -1.4
675,439 - MPMX19_00655 0.80 -0.1
675,439 - MPMX19_00655 0.80 -0.9
675,439 - MPMX19_00655 0.80 +1.5
675,439 - MPMX19_00655 0.80 -2.0
675,439 - MPMX19_00655 0.80 +0.6
675,439 - MPMX19_00655 0.80 -0.4
675,439 - MPMX19_00655 0.80 -0.6
675,439 - MPMX19_00655 0.80 -1.5
675,439 - MPMX19_00655 0.80 -0.6
675,439 - MPMX19_00655 0.80 -1.6
675,439 - MPMX19_00655 0.80 -2.1
675,439 - MPMX19_00655 0.80 -1.1
675,745 + +1.0
675,745 + -0.4
675,746 - -0.8
675,877 + -0.3
675,877 + -1.0
675,877 + +0.5
675,877 + -0.0
675,877 + -1.3
675,877 + -1.2
675,877 + +0.2
675,877 + -0.8
675,877 + -1.7
675,877 + -1.2
675,877 + -0.8
675,878 - -1.5
675,878 - -0.1
675,878 - -2.5
675,878 - -0.2
675,878 - -0.7
675,878 - -1.8
675,878 - +0.8
675,878 - -0.0
675,878 - -1.2
675,878 - +0.4
675,878 - -1.0
675,878 - -1.2
675,878 - +0.7
676,300 + MPMX19_00656 0.32 -0.3
676,300 + MPMX19_00656 0.32 -0.6
676,300 + MPMX19_00656 0.32 +0.2
676,300 + MPMX19_00656 0.32 +0.3
676,301 - MPMX19_00656 0.32 -3.5
676,301 - MPMX19_00656 0.32 +1.0
676,301 - MPMX19_00656 0.32 +0.4

Or see this region's nucleotide sequence