Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_00540

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_00539 and MPMX19_00540 are separated by 173 nucleotidesMPMX19_00540 and MPMX19_00541 are separated by 115 nucleotidesMPMX19_00541 and MPMX19_00542 are separated by 86 nucleotides MPMX19_00539: MPMX19_00539 - Ion-translocating oxidoreductase complex subunit B, at 553,908 to 555,962 _00539 MPMX19_00540: MPMX19_00540 - Tungstate-binding protein TupA, at 556,136 to 556,984 _00540 MPMX19_00541: MPMX19_00541 - Tungstate uptake system permease protein TupB, at 557,100 to 557,801 _00541 MPMX19_00542: MPMX19_00542 - Sulfur carrier protein FdhD, at 557,888 to 558,769 _00542 Position (kb) 556 557Strain fitness (log2 ratio) -2 -1 0 1 2at 555.247 kb on + strand, within MPMX19_00539at 555.247 kb on + strand, within MPMX19_00539at 555.247 kb on + strand, within MPMX19_00539at 555.248 kb on - strand, within MPMX19_00539at 555.248 kb on - strand, within MPMX19_00539at 555.248 kb on - strand, within MPMX19_00539at 555.385 kb on + strand, within MPMX19_00539at 555.385 kb on + strand, within MPMX19_00539at 555.385 kb on + strand, within MPMX19_00539at 555.385 kb on + strand, within MPMX19_00539at 555.385 kb on + strand, within MPMX19_00539at 555.385 kb on + strand, within MPMX19_00539at 555.385 kb on + strand, within MPMX19_00539at 555.385 kb on + strand, within MPMX19_00539at 555.385 kb on + strand, within MPMX19_00539at 555.385 kb on + strand, within MPMX19_00539at 555.385 kb on + strand, within MPMX19_00539at 555.386 kb on - strand, within MPMX19_00539at 555.386 kb on - strand, within MPMX19_00539at 555.386 kb on - strand, within MPMX19_00539at 555.386 kb on - strand, within MPMX19_00539at 555.386 kb on - strand, within MPMX19_00539at 555.386 kb on - strand, within MPMX19_00539at 555.568 kb on + strand, within MPMX19_00539at 555.568 kb on + strand, within MPMX19_00539at 555.568 kb on + strand, within MPMX19_00539at 555.568 kb on + strand, within MPMX19_00539at 555.568 kb on + strand, within MPMX19_00539at 555.568 kb on + strand, within MPMX19_00539at 555.568 kb on + strand, within MPMX19_00539at 555.568 kb on + strand, within MPMX19_00539at 555.569 kb on - strand, within MPMX19_00539at 555.569 kb on - strand, within MPMX19_00539at 555.569 kb on - strand, within MPMX19_00539at 555.569 kb on - strand, within MPMX19_00539at 555.569 kb on - strand, within MPMX19_00539at 555.569 kb on - strand, within MPMX19_00539at 555.569 kb on - strand, within MPMX19_00539at 556.017 kb on + strandat 556.017 kb on + strandat 556.017 kb on + strandat 556.017 kb on + strandat 556.017 kb on + strandat 556.017 kb on + strandat 556.017 kb on + strandat 556.017 kb on + strandat 556.017 kb on + strandat 556.017 kb on + strandat 556.017 kb on + strandat 556.017 kb on + strandat 556.017 kb on + strandat 556.018 kb on - strandat 556.018 kb on - strandat 556.018 kb on - strandat 556.018 kb on - strandat 556.018 kb on - strandat 556.018 kb on - strandat 556.018 kb on - strandat 556.018 kb on - strandat 556.137 kb on + strandat 556.137 kb on + strandat 556.137 kb on + strandat 556.137 kb on + strandat 556.137 kb on + strandat 556.137 kb on + strandat 556.137 kb on + strandat 556.137 kb on + strandat 556.137 kb on + strandat 556.138 kb on - strandat 556.138 kb on - strandat 556.138 kb on - strandat 556.138 kb on - strandat 556.138 kb on - strandat 556.138 kb on - strandat 556.138 kb on - strandat 556.138 kb on - strandat 556.138 kb on - strandat 556.138 kb on - strandat 556.138 kb on - strandat 556.138 kb on - strandat 556.138 kb on - strandat 556.138 kb on - strandat 556.138 kb on - strandat 556.138 kb on - strandat 556.191 kb on + strandat 556.191 kb on + strandat 556.191 kb on + strandat 556.192 kb on - strandat 556.302 kb on + strand, within MPMX19_00540at 556.302 kb on + strand, within MPMX19_00540at 556.302 kb on + strand, within MPMX19_00540at 556.302 kb on + strand, within MPMX19_00540at 556.303 kb on - strand, within MPMX19_00540at 556.303 kb on - strand, within MPMX19_00540at 556.303 kb on - strand, within MPMX19_00540at 556.395 kb on + strand, within MPMX19_00540at 556.395 kb on + strand, within MPMX19_00540at 556.395 kb on + strand, within MPMX19_00540at 556.395 kb on + strand, within MPMX19_00540at 556.396 kb on - strand, within MPMX19_00540at 556.396 kb on - strand, within MPMX19_00540at 556.455 kb on + strand, within MPMX19_00540at 556.456 kb on - strand, within MPMX19_00540at 556.656 kb on + strand, within MPMX19_00540at 556.656 kb on + strand, within MPMX19_00540at 556.656 kb on + strand, within MPMX19_00540at 556.656 kb on + strand, within MPMX19_00540at 556.656 kb on + strand, within MPMX19_00540at 556.656 kb on + strand, within MPMX19_00540at 556.656 kb on + strand, within MPMX19_00540at 556.656 kb on + strand, within MPMX19_00540at 556.656 kb on + strand, within MPMX19_00540at 556.656 kb on + strand, within MPMX19_00540at 556.656 kb on + strand, within MPMX19_00540at 556.656 kb on + strand, within MPMX19_00540at 556.656 kb on + strand, within MPMX19_00540at 556.656 kb on + strand, within MPMX19_00540at 556.657 kb on - strand, within MPMX19_00540at 556.657 kb on - strand, within MPMX19_00540at 556.657 kb on - strand, within MPMX19_00540at 556.657 kb on - strand, within MPMX19_00540at 556.657 kb on - strand, within MPMX19_00540at 556.657 kb on - strand, within MPMX19_00540at 556.657 kb on - strand, within MPMX19_00540at 556.657 kb on - strand, within MPMX19_00540at 556.657 kb on - strand, within MPMX19_00540at 556.657 kb on - strand, within MPMX19_00540at 556.657 kb on - strand, within MPMX19_00540at 556.657 kb on - strand, within MPMX19_00540at 556.657 kb on - strand, within MPMX19_00540at 557.023 kb on + strandat 557.023 kb on + strandat 557.024 kb on - strandat 557.024 kb on - strandat 557.024 kb on - strandat 557.024 kb on - strandat 557.413 kb on + strand, within MPMX19_00541at 557.413 kb on + strand, within MPMX19_00541at 557.413 kb on + strand, within MPMX19_00541at 557.413 kb on + strand, within MPMX19_00541at 557.414 kb on - strand, within MPMX19_00541at 557.414 kb on - strand, within MPMX19_00541at 557.557 kb on + strand, within MPMX19_00541at 557.557 kb on + strand, within MPMX19_00541at 557.557 kb on + strand, within MPMX19_00541at 557.557 kb on + strand, within MPMX19_00541at 557.557 kb on + strand, within MPMX19_00541at 557.557 kb on + strand, within MPMX19_00541at 557.557 kb on + strand, within MPMX19_00541at 557.557 kb on + strand, within MPMX19_00541at 557.557 kb on + strand, within MPMX19_00541at 557.557 kb on + strand, within MPMX19_00541at 557.558 kb on - strand, within MPMX19_00541at 557.558 kb on - strand, within MPMX19_00541at 557.558 kb on - strand, within MPMX19_00541at 557.558 kb on - strand, within MPMX19_00541at 557.558 kb on - strand, within MPMX19_00541at 557.558 kb on - strand, within MPMX19_00541at 557.558 kb on - strand, within MPMX19_00541at 557.558 kb on - strand, within MPMX19_00541at 557.558 kb on - strand, within MPMX19_00541at 557.558 kb on - strand, within MPMX19_00541at 557.558 kb on - strand, within MPMX19_00541at 557.558 kb on - strand, within MPMX19_00541at 557.824 kb on + strandat 557.824 kb on + strandat 557.825 kb on - strandat 557.910 kb on + strandat 557.910 kb on + strandat 557.910 kb on + strandat 557.911 kb on - strandat 557.911 kb on - strandat 557.911 kb on - strandat 557.911 kb on - strandat 557.911 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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555,247 + MPMX19_00539 0.65 -2.4
555,247 + MPMX19_00539 0.65 +0.2
555,247 + MPMX19_00539 0.65 -2.3
555,248 - MPMX19_00539 0.65 -0.1
555,248 - MPMX19_00539 0.65 +1.5
555,248 - MPMX19_00539 0.65 +2.0
555,385 + MPMX19_00539 0.72 -0.6
555,385 + MPMX19_00539 0.72 -0.1
555,385 + MPMX19_00539 0.72 +0.4
555,385 + MPMX19_00539 0.72 -0.8
555,385 + MPMX19_00539 0.72 +0.3
555,385 + MPMX19_00539 0.72 -1.0
555,385 + MPMX19_00539 0.72 -1.3
555,385 + MPMX19_00539 0.72 -0.3
555,385 + MPMX19_00539 0.72 +0.9
555,385 + MPMX19_00539 0.72 -1.2
555,385 + MPMX19_00539 0.72 -0.6
555,386 - MPMX19_00539 0.72 +1.5
555,386 - MPMX19_00539 0.72 +0.9
555,386 - MPMX19_00539 0.72 -1.3
555,386 - MPMX19_00539 0.72 -1.6
555,386 - MPMX19_00539 0.72 +0.4
555,386 - MPMX19_00539 0.72 +0.2
555,568 + MPMX19_00539 0.81 -2.7
555,568 + MPMX19_00539 0.81 -1.2
555,568 + MPMX19_00539 0.81 +0.4
555,568 + MPMX19_00539 0.81 -0.0
555,568 + MPMX19_00539 0.81 -1.2
555,568 + MPMX19_00539 0.81 +1.2
555,568 + MPMX19_00539 0.81 -0.7
555,568 + MPMX19_00539 0.81 -1.7
555,569 - MPMX19_00539 0.81 +0.1
555,569 - MPMX19_00539 0.81 -0.2
555,569 - MPMX19_00539 0.81 +1.0
555,569 - MPMX19_00539 0.81 +0.4
555,569 - MPMX19_00539 0.81 -1.6
555,569 - MPMX19_00539 0.81 -0.9
555,569 - MPMX19_00539 0.81 +0.6
556,017 + -0.3
556,017 + +1.6
556,017 + +2.3
556,017 + +1.2
556,017 + -0.3
556,017 + -0.1
556,017 + -0.3
556,017 + -0.5
556,017 + -0.9
556,017 + +1.0
556,017 + -0.3
556,017 + -1.3
556,017 + +0.3
556,018 - +2.0
556,018 - -0.1
556,018 - +0.2
556,018 - -2.0
556,018 - -0.3
556,018 - -0.2
556,018 - -1.6
556,018 - +0.8
556,137 + -0.8
556,137 + -0.8
556,137 + -1.7
556,137 + -1.0
556,137 + -0.3
556,137 + +1.4
556,137 + -0.7
556,137 + -0.6
556,137 + +0.4
556,138 - +0.8
556,138 - +0.4
556,138 - -0.8
556,138 - -0.9
556,138 - +1.0
556,138 - +0.5
556,138 - -2.0
556,138 - -0.2
556,138 - -0.8
556,138 - -0.6
556,138 - +0.4
556,138 - -1.5
556,138 - +0.6
556,138 - -0.2
556,138 - +0.5
556,138 - -0.5
556,191 + -0.0
556,191 + -0.3
556,191 + +1.0
556,192 - -1.0
556,302 + MPMX19_00540 0.20 -0.0
556,302 + MPMX19_00540 0.20 +0.2
556,302 + MPMX19_00540 0.20 -2.0
556,302 + MPMX19_00540 0.20 +1.0
556,303 - MPMX19_00540 0.20 -0.1
556,303 - MPMX19_00540 0.20 +1.0
556,303 - MPMX19_00540 0.20 -0.8
556,395 + MPMX19_00540 0.31 -1.2
556,395 + MPMX19_00540 0.31 +0.8
556,395 + MPMX19_00540 0.31 -2.5
556,395 + MPMX19_00540 0.31 +0.4
556,396 - MPMX19_00540 0.31 -1.5
556,396 - MPMX19_00540 0.31 -1.2
556,455 + MPMX19_00540 0.38 -0.6
556,456 - MPMX19_00540 0.38 -0.8
556,656 + MPMX19_00540 0.61 +0.5
556,656 + MPMX19_00540 0.61 +0.1
556,656 + MPMX19_00540 0.61 +1.8
556,656 + MPMX19_00540 0.61 +0.3
556,656 + MPMX19_00540 0.61 +1.4
556,656 + MPMX19_00540 0.61 +0.6
556,656 + MPMX19_00540 0.61 -1.8
556,656 + MPMX19_00540 0.61 +0.2
556,656 + MPMX19_00540 0.61 +0.6
556,656 + MPMX19_00540 0.61 -1.2
556,656 + MPMX19_00540 0.61 +0.1
556,656 + MPMX19_00540 0.61 +1.5
556,656 + MPMX19_00540 0.61 -1.7
556,656 + MPMX19_00540 0.61 -1.7
556,657 - MPMX19_00540 0.61 +0.4
556,657 - MPMX19_00540 0.61 -0.4
556,657 - MPMX19_00540 0.61 -0.7
556,657 - MPMX19_00540 0.61 +0.4
556,657 - MPMX19_00540 0.61 -0.3
556,657 - MPMX19_00540 0.61 +0.1
556,657 - MPMX19_00540 0.61 -2.7
556,657 - MPMX19_00540 0.61 -0.6
556,657 - MPMX19_00540 0.61 -2.2
556,657 - MPMX19_00540 0.61 +1.3
556,657 - MPMX19_00540 0.61 +2.0
556,657 - MPMX19_00540 0.61 +0.8
556,657 - MPMX19_00540 0.61 -1.3
557,023 + -0.8
557,023 + +1.2
557,024 - -0.1
557,024 - +1.0
557,024 - +1.0
557,024 - +0.4
557,413 + MPMX19_00541 0.45 +0.2
557,413 + MPMX19_00541 0.45 -2.6
557,413 + MPMX19_00541 0.45 -0.7
557,413 + MPMX19_00541 0.45 -0.7
557,414 - MPMX19_00541 0.45 -1.0
557,414 - MPMX19_00541 0.45 +0.8
557,557 + MPMX19_00541 0.65 -0.6
557,557 + MPMX19_00541 0.65 +1.5
557,557 + MPMX19_00541 0.65 -1.0
557,557 + MPMX19_00541 0.65 -1.1
557,557 + MPMX19_00541 0.65 +0.3
557,557 + MPMX19_00541 0.65 +0.8
557,557 + MPMX19_00541 0.65 -0.1
557,557 + MPMX19_00541 0.65 -0.2
557,557 + MPMX19_00541 0.65 -1.1
557,557 + MPMX19_00541 0.65 +1.0
557,558 - MPMX19_00541 0.65 -2.1
557,558 - MPMX19_00541 0.65 -0.8
557,558 - MPMX19_00541 0.65 +0.5
557,558 - MPMX19_00541 0.65 -0.2
557,558 - MPMX19_00541 0.65 -0.4
557,558 - MPMX19_00541 0.65 +0.4
557,558 - MPMX19_00541 0.65 -0.7
557,558 - MPMX19_00541 0.65 -0.3
557,558 - MPMX19_00541 0.65 -0.1
557,558 - MPMX19_00541 0.65 -1.1
557,558 - MPMX19_00541 0.65 -0.2
557,558 - MPMX19_00541 0.65 -2.0
557,824 + +1.5
557,824 + +0.4
557,825 - -1.6
557,910 + +0.4
557,910 + -1.0
557,910 + -0.5
557,911 - +0.7
557,911 - -1.7
557,911 - -0.0
557,911 - -1.3
557,911 - +1.3

Or see this region's nucleotide sequence