Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_00487

Experiment: NF

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_00486 and MPMX19_00487 are separated by 21 nucleotidesMPMX19_00487 and MPMX19_00488 are separated by 134 nucleotides MPMX19_00486: MPMX19_00486 - sn-glycerol-3-phosphate import ATP-binding protein UgpC, at 487,321 to 488,397 _00486 MPMX19_00487: MPMX19_00487 - hypothetical protein, at 488,419 to 488,583 _00487 MPMX19_00488: MPMX19_00488 - Protease HtpX, at 488,718 to 489,716 _00488 Position (kb) 488 489Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 487.570 kb on + strand, within MPMX19_00486at 487.570 kb on + strand, within MPMX19_00486at 487.570 kb on + strand, within MPMX19_00486at 487.570 kb on + strand, within MPMX19_00486at 487.570 kb on + strand, within MPMX19_00486at 487.570 kb on + strand, within MPMX19_00486at 487.570 kb on + strand, within MPMX19_00486at 487.570 kb on + strand, within MPMX19_00486at 487.570 kb on + strand, within MPMX19_00486at 487.570 kb on + strand, within MPMX19_00486at 487.570 kb on + strand, within MPMX19_00486at 487.570 kb on + strand, within MPMX19_00486at 487.571 kb on - strand, within MPMX19_00486at 487.579 kb on + strand, within MPMX19_00486at 487.612 kb on + strand, within MPMX19_00486at 487.612 kb on + strand, within MPMX19_00486at 487.612 kb on + strand, within MPMX19_00486at 487.612 kb on + strand, within MPMX19_00486at 487.613 kb on - strand, within MPMX19_00486at 487.613 kb on - strand, within MPMX19_00486at 487.613 kb on - strand, within MPMX19_00486at 487.613 kb on - strand, within MPMX19_00486at 487.613 kb on - strand, within MPMX19_00486at 487.613 kb on - strand, within MPMX19_00486at 487.885 kb on + strand, within MPMX19_00486at 487.885 kb on + strand, within MPMX19_00486at 487.885 kb on + strand, within MPMX19_00486at 487.885 kb on + strand, within MPMX19_00486at 487.885 kb on + strand, within MPMX19_00486at 487.885 kb on + strand, within MPMX19_00486at 487.885 kb on + strand, within MPMX19_00486at 487.885 kb on + strand, within MPMX19_00486at 487.886 kb on - strand, within MPMX19_00486at 487.886 kb on - strand, within MPMX19_00486at 487.886 kb on - strand, within MPMX19_00486at 487.886 kb on - strand, within MPMX19_00486at 487.886 kb on - strand, within MPMX19_00486at 487.886 kb on - strand, within MPMX19_00486at 487.886 kb on - strand, within MPMX19_00486at 487.886 kb on - strand, within MPMX19_00486at 487.886 kb on - strand, within MPMX19_00486at 487.886 kb on - strand, within MPMX19_00486at 487.886 kb on - strand, within MPMX19_00486at 487.886 kb on - strand, within MPMX19_00486at 487.886 kb on - strand, within MPMX19_00486at 487.984 kb on + strand, within MPMX19_00486at 487.984 kb on + strand, within MPMX19_00486at 487.984 kb on + strand, within MPMX19_00486at 487.984 kb on + strand, within MPMX19_00486at 487.984 kb on + strand, within MPMX19_00486at 487.984 kb on + strand, within MPMX19_00486at 487.984 kb on + strand, within MPMX19_00486at 487.985 kb on - strand, within MPMX19_00486at 487.985 kb on - strand, within MPMX19_00486at 487.985 kb on - strand, within MPMX19_00486at 487.985 kb on - strand, within MPMX19_00486at 487.985 kb on - strand, within MPMX19_00486at 487.985 kb on - strand, within MPMX19_00486at 487.985 kb on - strand, within MPMX19_00486at 487.985 kb on - strand, within MPMX19_00486at 487.985 kb on - strand, within MPMX19_00486at 488.254 kb on + strand, within MPMX19_00486at 488.254 kb on + strand, within MPMX19_00486at 488.254 kb on + strand, within MPMX19_00486at 488.254 kb on + strand, within MPMX19_00486at 488.254 kb on + strand, within MPMX19_00486at 488.254 kb on + strand, within MPMX19_00486at 488.254 kb on + strand, within MPMX19_00486at 488.254 kb on + strand, within MPMX19_00486at 488.254 kb on + strand, within MPMX19_00486at 488.254 kb on + strand, within MPMX19_00486at 488.254 kb on + strand, within MPMX19_00486at 488.254 kb on + strand, within MPMX19_00486at 488.254 kb on + strand, within MPMX19_00486at 488.254 kb on + strand, within MPMX19_00486at 488.254 kb on + strand, within MPMX19_00486at 488.254 kb on + strand, within MPMX19_00486at 488.255 kb on - strand, within MPMX19_00486at 488.255 kb on - strand, within MPMX19_00486at 488.255 kb on - strand, within MPMX19_00486at 488.255 kb on - strand, within MPMX19_00486at 488.255 kb on - strand, within MPMX19_00486at 488.255 kb on - strand, within MPMX19_00486at 488.255 kb on - strand, within MPMX19_00486at 488.255 kb on - strand, within MPMX19_00486at 488.255 kb on - strand, within MPMX19_00486at 488.255 kb on - strand, within MPMX19_00486at 488.255 kb on - strand, within MPMX19_00486at 488.255 kb on - strand, within MPMX19_00486at 488.255 kb on - strand, within MPMX19_00486at 488.255 kb on - strand, within MPMX19_00486at 488.459 kb on + strand, within MPMX19_00487at 488.650 kb on - strandat 488.650 kb on - strandat 488.650 kb on - strandat 488.650 kb on - strandat 488.650 kb on - strandat 488.650 kb on - strandat 488.650 kb on - strandat 488.681 kb on - strandat 488.709 kb on - strandat 488.709 kb on - strandat 488.709 kb on - strandat 488.709 kb on - strandat 488.727 kb on + strandat 488.727 kb on + strandat 488.727 kb on + strandat 488.727 kb on + strandat 488.727 kb on + strandat 488.727 kb on + strandat 488.727 kb on + strandat 488.727 kb on + strandat 488.727 kb on + strandat 488.728 kb on - strandat 488.728 kb on - strandat 488.728 kb on - strandat 488.728 kb on - strandat 488.728 kb on - strandat 488.728 kb on - strandat 488.728 kb on - strandat 488.728 kb on - strandat 488.728 kb on - strandat 488.853 kb on + strand, within MPMX19_00488at 488.853 kb on + strand, within MPMX19_00488at 488.853 kb on + strand, within MPMX19_00488at 488.854 kb on - strand, within MPMX19_00488at 488.854 kb on - strand, within MPMX19_00488at 488.854 kb on - strand, within MPMX19_00488at 488.854 kb on - strand, within MPMX19_00488at 488.886 kb on + strand, within MPMX19_00488at 488.886 kb on + strand, within MPMX19_00488at 488.886 kb on + strand, within MPMX19_00488at 488.886 kb on + strand, within MPMX19_00488at 488.886 kb on + strand, within MPMX19_00488at 488.886 kb on + strand, within MPMX19_00488at 488.886 kb on + strand, within MPMX19_00488at 488.886 kb on + strand, within MPMX19_00488at 488.886 kb on + strand, within MPMX19_00488at 488.886 kb on + strand, within MPMX19_00488at 488.886 kb on + strand, within MPMX19_00488at 488.886 kb on + strand, within MPMX19_00488at 488.887 kb on - strand, within MPMX19_00488at 488.887 kb on - strand, within MPMX19_00488at 488.887 kb on - strand, within MPMX19_00488at 488.887 kb on - strand, within MPMX19_00488at 488.887 kb on - strand, within MPMX19_00488at 488.887 kb on - strand, within MPMX19_00488at 488.887 kb on - strand, within MPMX19_00488at 488.887 kb on - strand, within MPMX19_00488at 488.887 kb on - strand, within MPMX19_00488at 488.887 kb on - strand, within MPMX19_00488at 488.887 kb on - strand, within MPMX19_00488at 488.887 kb on - strand, within MPMX19_00488at 488.910 kb on + strand, within MPMX19_00488at 488.910 kb on + strand, within MPMX19_00488at 488.982 kb on + strand, within MPMX19_00488at 488.982 kb on + strand, within MPMX19_00488at 488.982 kb on + strand, within MPMX19_00488at 488.982 kb on + strand, within MPMX19_00488at 488.982 kb on + strand, within MPMX19_00488at 488.982 kb on + strand, within MPMX19_00488at 488.982 kb on + strand, within MPMX19_00488at 488.982 kb on + strand, within MPMX19_00488at 488.982 kb on + strand, within MPMX19_00488at 488.982 kb on + strand, within MPMX19_00488at 488.982 kb on + strand, within MPMX19_00488at 488.982 kb on + strand, within MPMX19_00488at 488.982 kb on + strand, within MPMX19_00488at 488.982 kb on + strand, within MPMX19_00488at 488.982 kb on + strand, within MPMX19_00488at 488.982 kb on + strand, within MPMX19_00488at 488.982 kb on + strand, within MPMX19_00488at 488.982 kb on + strand, within MPMX19_00488at 488.982 kb on + strand, within MPMX19_00488at 488.982 kb on + strand, within MPMX19_00488at 488.982 kb on + strand, within MPMX19_00488at 488.982 kb on + strand, within MPMX19_00488at 488.982 kb on + strand, within MPMX19_00488at 488.983 kb on - strand, within MPMX19_00488at 488.983 kb on - strand, within MPMX19_00488at 488.983 kb on - strand, within MPMX19_00488at 488.983 kb on - strand, within MPMX19_00488at 488.983 kb on - strand, within MPMX19_00488at 488.983 kb on - strand, within MPMX19_00488at 488.983 kb on - strand, within MPMX19_00488at 488.983 kb on - strand, within MPMX19_00488at 488.983 kb on - strand, within MPMX19_00488at 488.983 kb on - strand, within MPMX19_00488at 488.983 kb on - strand, within MPMX19_00488at 488.983 kb on - strand, within MPMX19_00488at 488.983 kb on - strand, within MPMX19_00488at 489.432 kb on + strand, within MPMX19_00488at 489.432 kb on + strand, within MPMX19_00488at 489.432 kb on + strand, within MPMX19_00488at 489.432 kb on + strand, within MPMX19_00488at 489.433 kb on - strand, within MPMX19_00488at 489.433 kb on - strand, within MPMX19_00488at 489.433 kb on - strand, within MPMX19_00488at 489.433 kb on - strand, within MPMX19_00488at 489.433 kb on - strand, within MPMX19_00488at 489.433 kb on - strand, within MPMX19_00488at 489.433 kb on - strand, within MPMX19_00488

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NF
remove
487,570 + MPMX19_00486 0.23 +1.3
487,570 + MPMX19_00486 0.23 -0.1
487,570 + MPMX19_00486 0.23 -0.1
487,570 + MPMX19_00486 0.23 -0.6
487,570 + MPMX19_00486 0.23 -0.0
487,570 + MPMX19_00486 0.23 -1.2
487,570 + MPMX19_00486 0.23 +0.4
487,570 + MPMX19_00486 0.23 -1.1
487,570 + MPMX19_00486 0.23 +0.6
487,570 + MPMX19_00486 0.23 +0.2
487,570 + MPMX19_00486 0.23 +0.7
487,570 + MPMX19_00486 0.23 +0.4
487,571 - MPMX19_00486 0.23 -1.4
487,579 + MPMX19_00486 0.24 -0.4
487,612 + MPMX19_00486 0.27 -0.0
487,612 + MPMX19_00486 0.27 +1.1
487,612 + MPMX19_00486 0.27 +0.2
487,612 + MPMX19_00486 0.27 -0.9
487,613 - MPMX19_00486 0.27 +0.1
487,613 - MPMX19_00486 0.27 +0.3
487,613 - MPMX19_00486 0.27 +0.2
487,613 - MPMX19_00486 0.27 -0.8
487,613 - MPMX19_00486 0.27 -1.2
487,613 - MPMX19_00486 0.27 +0.3
487,885 + MPMX19_00486 0.52 +1.2
487,885 + MPMX19_00486 0.52 +0.6
487,885 + MPMX19_00486 0.52 +0.2
487,885 + MPMX19_00486 0.52 -0.7
487,885 + MPMX19_00486 0.52 -1.5
487,885 + MPMX19_00486 0.52 -0.0
487,885 + MPMX19_00486 0.52 +0.1
487,885 + MPMX19_00486 0.52 +0.4
487,886 - MPMX19_00486 0.52 -0.4
487,886 - MPMX19_00486 0.52 +1.8
487,886 - MPMX19_00486 0.52 +1.0
487,886 - MPMX19_00486 0.52 +0.6
487,886 - MPMX19_00486 0.52 +0.2
487,886 - MPMX19_00486 0.52 -0.1
487,886 - MPMX19_00486 0.52 -0.4
487,886 - MPMX19_00486 0.52 +0.1
487,886 - MPMX19_00486 0.52 -1.0
487,886 - MPMX19_00486 0.52 +0.0
487,886 - MPMX19_00486 0.52 -1.2
487,886 - MPMX19_00486 0.52 -0.2
487,886 - MPMX19_00486 0.52 -0.5
487,984 + MPMX19_00486 0.62 -1.4
487,984 + MPMX19_00486 0.62 +1.0
487,984 + MPMX19_00486 0.62 -0.8
487,984 + MPMX19_00486 0.62 +0.1
487,984 + MPMX19_00486 0.62 -0.0
487,984 + MPMX19_00486 0.62 -1.2
487,984 + MPMX19_00486 0.62 -0.7
487,985 - MPMX19_00486 0.62 +1.2
487,985 - MPMX19_00486 0.62 +0.2
487,985 - MPMX19_00486 0.62 +1.9
487,985 - MPMX19_00486 0.62 -1.0
487,985 - MPMX19_00486 0.62 -0.6
487,985 - MPMX19_00486 0.62 -0.3
487,985 - MPMX19_00486 0.62 -0.0
487,985 - MPMX19_00486 0.62 +1.4
487,985 - MPMX19_00486 0.62 +1.2
488,254 + MPMX19_00486 0.87 -0.7
488,254 + MPMX19_00486 0.87 +1.1
488,254 + MPMX19_00486 0.87 -0.4
488,254 + MPMX19_00486 0.87 -2.0
488,254 + MPMX19_00486 0.87 +1.0
488,254 + MPMX19_00486 0.87 +0.5
488,254 + MPMX19_00486 0.87 -0.8
488,254 + MPMX19_00486 0.87 -1.4
488,254 + MPMX19_00486 0.87 -1.9
488,254 + MPMX19_00486 0.87 -0.0
488,254 + MPMX19_00486 0.87 +0.2
488,254 + MPMX19_00486 0.87 -0.4
488,254 + MPMX19_00486 0.87 -0.5
488,254 + MPMX19_00486 0.87 +0.9
488,254 + MPMX19_00486 0.87 -0.6
488,254 + MPMX19_00486 0.87 -0.8
488,255 - MPMX19_00486 0.87 -0.8
488,255 - MPMX19_00486 0.87 -0.3
488,255 - MPMX19_00486 0.87 -0.3
488,255 - MPMX19_00486 0.87 +1.0
488,255 - MPMX19_00486 0.87 -1.5
488,255 - MPMX19_00486 0.87 -2.0
488,255 - MPMX19_00486 0.87 +0.3
488,255 - MPMX19_00486 0.87 -1.1
488,255 - MPMX19_00486 0.87 +0.6
488,255 - MPMX19_00486 0.87 -3.0
488,255 - MPMX19_00486 0.87 -1.0
488,255 - MPMX19_00486 0.87 -1.2
488,255 - MPMX19_00486 0.87 +0.9
488,255 - MPMX19_00486 0.87 -0.2
488,459 + MPMX19_00487 0.24 +0.2
488,650 - -0.8
488,650 - +0.6
488,650 - -0.4
488,650 - -0.1
488,650 - -1.3
488,650 - +0.4
488,650 - -0.7
488,681 - -0.2
488,709 - +0.5
488,709 - +1.0
488,709 - +0.6
488,709 - -0.4
488,727 + -0.2
488,727 + +0.2
488,727 + +0.2
488,727 + -1.3
488,727 + +2.0
488,727 + -1.4
488,727 + -0.4
488,727 + -0.6
488,727 + -1.0
488,728 - -0.6
488,728 - -0.3
488,728 - -0.8
488,728 - -0.5
488,728 - -0.0
488,728 - -0.1
488,728 - -0.8
488,728 - +0.7
488,728 - +0.8
488,853 + MPMX19_00488 0.14 -1.0
488,853 + MPMX19_00488 0.14 +0.4
488,853 + MPMX19_00488 0.14 -1.0
488,854 - MPMX19_00488 0.14 +1.0
488,854 - MPMX19_00488 0.14 +0.1
488,854 - MPMX19_00488 0.14 -0.2
488,854 - MPMX19_00488 0.14 -0.0
488,886 + MPMX19_00488 0.17 +1.0
488,886 + MPMX19_00488 0.17 +0.5
488,886 + MPMX19_00488 0.17 +1.0
488,886 + MPMX19_00488 0.17 -0.6
488,886 + MPMX19_00488 0.17 +0.9
488,886 + MPMX19_00488 0.17 +0.7
488,886 + MPMX19_00488 0.17 +0.6
488,886 + MPMX19_00488 0.17 -1.0
488,886 + MPMX19_00488 0.17 -0.4
488,886 + MPMX19_00488 0.17 -0.7
488,886 + MPMX19_00488 0.17 +0.4
488,886 + MPMX19_00488 0.17 -0.7
488,887 - MPMX19_00488 0.17 -0.1
488,887 - MPMX19_00488 0.17 -0.7
488,887 - MPMX19_00488 0.17 +0.7
488,887 - MPMX19_00488 0.17 +1.0
488,887 - MPMX19_00488 0.17 -0.7
488,887 - MPMX19_00488 0.17 -0.5
488,887 - MPMX19_00488 0.17 +0.8
488,887 - MPMX19_00488 0.17 +0.1
488,887 - MPMX19_00488 0.17 -0.4
488,887 - MPMX19_00488 0.17 -1.2
488,887 - MPMX19_00488 0.17 +1.0
488,887 - MPMX19_00488 0.17 -0.6
488,910 + MPMX19_00488 0.19 -0.8
488,910 + MPMX19_00488 0.19 -0.3
488,982 + MPMX19_00488 0.26 -0.4
488,982 + MPMX19_00488 0.26 -0.1
488,982 + MPMX19_00488 0.26 -0.1
488,982 + MPMX19_00488 0.26 -2.7
488,982 + MPMX19_00488 0.26 -0.2
488,982 + MPMX19_00488 0.26 -0.8
488,982 + MPMX19_00488 0.26 -0.2
488,982 + MPMX19_00488 0.26 +0.7
488,982 + MPMX19_00488 0.26 -1.0
488,982 + MPMX19_00488 0.26 -0.0
488,982 + MPMX19_00488 0.26 +0.3
488,982 + MPMX19_00488 0.26 -1.0
488,982 + MPMX19_00488 0.26 -1.0
488,982 + MPMX19_00488 0.26 -0.2
488,982 + MPMX19_00488 0.26 +0.4
488,982 + MPMX19_00488 0.26 +0.5
488,982 + MPMX19_00488 0.26 +0.3
488,982 + MPMX19_00488 0.26 -0.0
488,982 + MPMX19_00488 0.26 +0.9
488,982 + MPMX19_00488 0.26 -2.2
488,982 + MPMX19_00488 0.26 +1.0
488,982 + MPMX19_00488 0.26 -1.2
488,982 + MPMX19_00488 0.26 -1.9
488,983 - MPMX19_00488 0.27 +1.2
488,983 - MPMX19_00488 0.27 -0.2
488,983 - MPMX19_00488 0.27 +1.3
488,983 - MPMX19_00488 0.27 +0.1
488,983 - MPMX19_00488 0.27 +0.2
488,983 - MPMX19_00488 0.27 +0.2
488,983 - MPMX19_00488 0.27 +0.2
488,983 - MPMX19_00488 0.27 -0.5
488,983 - MPMX19_00488 0.27 -0.2
488,983 - MPMX19_00488 0.27 +1.2
488,983 - MPMX19_00488 0.27 -2.3
488,983 - MPMX19_00488 0.27 -1.1
488,983 - MPMX19_00488 0.27 -0.0
489,432 + MPMX19_00488 0.71 -0.6
489,432 + MPMX19_00488 0.71 -0.4
489,432 + MPMX19_00488 0.71 +2.0
489,432 + MPMX19_00488 0.71 -1.1
489,433 - MPMX19_00488 0.72 -0.4
489,433 - MPMX19_00488 0.72 -1.0
489,433 - MPMX19_00488 0.72 -0.9
489,433 - MPMX19_00488 0.72 -0.4
489,433 - MPMX19_00488 0.72 +2.0
489,433 - MPMX19_00488 0.72 -2.3
489,433 - MPMX19_00488 0.72 +1.8

Or see this region's nucleotide sequence