Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_00429

Experiment: NF

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_00428 and MPMX19_00429 are separated by 118 nucleotidesMPMX19_00429 and MPMX19_00430 are separated by 111 nucleotidesMPMX19_00430 and MPMX19_00431 are separated by 12 nucleotides MPMX19_00428: MPMX19_00428 - hypothetical protein, at 429,281 to 430,783 _00428 MPMX19_00429: MPMX19_00429 - hypothetical protein, at 430,902 to 431,135 _00429 MPMX19_00430: MPMX19_00430 - hypothetical protein, at 431,247 to 431,609 _00430 MPMX19_00431: MPMX19_00431 - hypothetical protein, at 431,622 to 432,335 _00431 Position (kb) 430 431 432Strain fitness (log2 ratio) -2 -1 0 1 2at 430.118 kb on + strand, within MPMX19_00428at 430.118 kb on + strand, within MPMX19_00428at 430.119 kb on - strand, within MPMX19_00428at 430.119 kb on - strand, within MPMX19_00428at 430.119 kb on - strand, within MPMX19_00428at 430.119 kb on - strand, within MPMX19_00428at 430.119 kb on - strand, within MPMX19_00428at 430.119 kb on - strand, within MPMX19_00428at 430.119 kb on - strand, within MPMX19_00428at 430.445 kb on + strand, within MPMX19_00428at 430.446 kb on - strand, within MPMX19_00428at 430.446 kb on - strand, within MPMX19_00428at 430.451 kb on + strand, within MPMX19_00428at 430.451 kb on + strand, within MPMX19_00428at 430.451 kb on + strand, within MPMX19_00428at 430.451 kb on + strand, within MPMX19_00428at 430.451 kb on + strand, within MPMX19_00428at 430.451 kb on + strand, within MPMX19_00428at 430.451 kb on + strand, within MPMX19_00428at 430.451 kb on + strand, within MPMX19_00428at 430.451 kb on + strand, within MPMX19_00428at 430.451 kb on + strand, within MPMX19_00428at 430.451 kb on + strand, within MPMX19_00428at 430.451 kb on + strand, within MPMX19_00428at 430.451 kb on + strand, within MPMX19_00428at 430.452 kb on - strand, within MPMX19_00428at 430.452 kb on - strand, within MPMX19_00428at 430.452 kb on - strand, within MPMX19_00428at 430.452 kb on - strand, within MPMX19_00428at 430.452 kb on - strand, within MPMX19_00428at 430.452 kb on - strand, within MPMX19_00428at 430.452 kb on - strand, within MPMX19_00428at 430.452 kb on - strand, within MPMX19_00428at 430.493 kb on + strand, within MPMX19_00428at 430.493 kb on + strand, within MPMX19_00428at 430.493 kb on + strand, within MPMX19_00428at 430.493 kb on + strand, within MPMX19_00428at 430.493 kb on + strand, within MPMX19_00428at 430.493 kb on + strand, within MPMX19_00428at 430.493 kb on + strand, within MPMX19_00428at 430.493 kb on + strand, within MPMX19_00428at 430.493 kb on + strand, within MPMX19_00428at 430.493 kb on + strand, within MPMX19_00428at 430.493 kb on + strand, within MPMX19_00428at 430.493 kb on + strand, within MPMX19_00428at 430.493 kb on + strand, within MPMX19_00428at 430.493 kb on + strand, within MPMX19_00428at 430.493 kb on + strand, within MPMX19_00428at 430.493 kb on + strand, within MPMX19_00428at 430.493 kb on + strand, within MPMX19_00428at 430.493 kb on + strand, within MPMX19_00428at 430.494 kb on - strand, within MPMX19_00428at 430.494 kb on - strand, within MPMX19_00428at 430.494 kb on - strand, within MPMX19_00428at 430.494 kb on - strand, within MPMX19_00428at 430.494 kb on - strand, within MPMX19_00428at 430.494 kb on - strand, within MPMX19_00428at 430.494 kb on - strand, within MPMX19_00428at 430.494 kb on - strand, within MPMX19_00428at 430.494 kb on - strand, within MPMX19_00428at 430.494 kb on - strand, within MPMX19_00428at 430.494 kb on - strand, within MPMX19_00428at 430.494 kb on - strand, within MPMX19_00428at 430.494 kb on - strand, within MPMX19_00428at 430.494 kb on - strand, within MPMX19_00428at 430.494 kb on - strand, within MPMX19_00428at 430.494 kb on - strand, within MPMX19_00428at 430.494 kb on - strand, within MPMX19_00428at 430.553 kb on + strand, within MPMX19_00428at 430.553 kb on + strand, within MPMX19_00428at 430.553 kb on + strand, within MPMX19_00428at 430.553 kb on + strand, within MPMX19_00428at 430.553 kb on + strand, within MPMX19_00428at 430.554 kb on - strand, within MPMX19_00428at 430.554 kb on - strand, within MPMX19_00428at 430.554 kb on - strand, within MPMX19_00428at 430.554 kb on - strand, within MPMX19_00428at 430.554 kb on - strand, within MPMX19_00428at 430.781 kb on + strandat 430.781 kb on + strandat 430.781 kb on + strandat 430.781 kb on + strandat 430.781 kb on + strandat 430.781 kb on + strandat 430.781 kb on + strandat 430.781 kb on + strandat 430.781 kb on + strandat 430.781 kb on + strandat 430.781 kb on + strandat 430.781 kb on + strandat 430.782 kb on - strandat 430.782 kb on - strandat 430.782 kb on - strandat 430.782 kb on - strandat 430.782 kb on - strandat 430.782 kb on - strandat 430.782 kb on - strandat 430.782 kb on - strandat 430.782 kb on - strandat 430.782 kb on - strandat 430.859 kb on + strandat 430.861 kb on + strandat 430.862 kb on - strandat 430.869 kb on + strandat 430.957 kb on + strand, within MPMX19_00429at 430.957 kb on + strand, within MPMX19_00429at 430.957 kb on + strand, within MPMX19_00429at 430.957 kb on + strand, within MPMX19_00429at 430.957 kb on + strand, within MPMX19_00429at 430.958 kb on - strand, within MPMX19_00429at 430.958 kb on - strand, within MPMX19_00429at 430.958 kb on - strand, within MPMX19_00429at 430.958 kb on - strand, within MPMX19_00429at 430.958 kb on - strand, within MPMX19_00429at 430.958 kb on - strand, within MPMX19_00429at 430.958 kb on - strand, within MPMX19_00429at 431.217 kb on + strandat 431.217 kb on + strandat 431.217 kb on + strandat 431.217 kb on + strandat 431.217 kb on + strandat 431.217 kb on + strandat 431.217 kb on + strandat 431.217 kb on + strandat 431.217 kb on + strandat 431.218 kb on + strandat 431.218 kb on - strandat 431.218 kb on - strandat 431.218 kb on - strandat 431.218 kb on - strandat 431.218 kb on - strandat 431.218 kb on - strandat 431.218 kb on - strandat 431.235 kb on + strandat 431.235 kb on + strandat 431.235 kb on + strandat 431.235 kb on + strandat 431.266 kb on + strandat 431.266 kb on + strandat 431.266 kb on + strandat 431.266 kb on + strandat 431.267 kb on - strandat 431.267 kb on - strandat 431.267 kb on - strandat 431.267 kb on - strandat 431.267 kb on - strandat 431.267 kb on - strandat 431.267 kb on - strandat 431.267 kb on - strandat 431.267 kb on - strandat 431.267 kb on - strandat 431.267 kb on - strandat 431.404 kb on + strand, within MPMX19_00430at 431.404 kb on + strand, within MPMX19_00430at 431.404 kb on + strand, within MPMX19_00430at 431.404 kb on + strand, within MPMX19_00430at 431.405 kb on - strand, within MPMX19_00430at 431.405 kb on - strand, within MPMX19_00430at 431.405 kb on - strand, within MPMX19_00430at 431.405 kb on - strand, within MPMX19_00430at 431.405 kb on - strand, within MPMX19_00430at 431.405 kb on - strand, within MPMX19_00430at 431.405 kb on - strand, within MPMX19_00430at 431.405 kb on - strand, within MPMX19_00430at 431.419 kb on + strand, within MPMX19_00430at 431.419 kb on + strand, within MPMX19_00430at 431.419 kb on + strand, within MPMX19_00430at 431.419 kb on + strand, within MPMX19_00430at 431.419 kb on + strand, within MPMX19_00430at 431.420 kb on - strand, within MPMX19_00430at 431.420 kb on - strand, within MPMX19_00430at 431.488 kb on + strand, within MPMX19_00430at 431.488 kb on + strand, within MPMX19_00430at 431.488 kb on + strand, within MPMX19_00430at 431.488 kb on + strand, within MPMX19_00430at 431.488 kb on + strand, within MPMX19_00430at 431.488 kb on + strand, within MPMX19_00430at 431.488 kb on + strand, within MPMX19_00430at 431.488 kb on + strand, within MPMX19_00430at 431.488 kb on + strand, within MPMX19_00430at 431.488 kb on + strand, within MPMX19_00430at 431.488 kb on + strand, within MPMX19_00430at 431.488 kb on + strand, within MPMX19_00430at 431.489 kb on - strand, within MPMX19_00430at 431.489 kb on - strand, within MPMX19_00430at 431.489 kb on - strand, within MPMX19_00430at 431.489 kb on - strand, within MPMX19_00430at 431.489 kb on - strand, within MPMX19_00430at 431.489 kb on - strand, within MPMX19_00430at 431.489 kb on - strand, within MPMX19_00430at 431.489 kb on - strand, within MPMX19_00430at 431.489 kb on - strand, within MPMX19_00430at 431.489 kb on - strand, within MPMX19_00430at 431.489 kb on - strand, within MPMX19_00430at 431.675 kb on - strandat 431.722 kb on + strand, within MPMX19_00431at 431.722 kb on + strand, within MPMX19_00431at 431.722 kb on + strand, within MPMX19_00431at 431.722 kb on + strand, within MPMX19_00431at 431.722 kb on + strand, within MPMX19_00431at 431.722 kb on + strand, within MPMX19_00431at 431.722 kb on + strand, within MPMX19_00431at 431.722 kb on + strand, within MPMX19_00431at 431.722 kb on + strand, within MPMX19_00431at 431.722 kb on + strand, within MPMX19_00431at 431.723 kb on - strand, within MPMX19_00431at 431.723 kb on - strand, within MPMX19_00431at 431.723 kb on - strand, within MPMX19_00431at 431.723 kb on - strand, within MPMX19_00431at 431.723 kb on - strand, within MPMX19_00431at 431.723 kb on - strand, within MPMX19_00431at 431.723 kb on - strand, within MPMX19_00431at 431.723 kb on - strand, within MPMX19_00431at 431.729 kb on + strand, within MPMX19_00431at 431.729 kb on + strand, within MPMX19_00431at 431.729 kb on + strand, within MPMX19_00431at 431.729 kb on + strand, within MPMX19_00431at 431.730 kb on - strand, within MPMX19_00431at 431.730 kb on - strand, within MPMX19_00431at 431.842 kb on + strand, within MPMX19_00431at 431.842 kb on + strand, within MPMX19_00431at 431.843 kb on - strand, within MPMX19_00431at 431.843 kb on - strand, within MPMX19_00431at 431.843 kb on - strand, within MPMX19_00431at 431.843 kb on - strand, within MPMX19_00431at 431.843 kb on - strand, within MPMX19_00431

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NF
remove
430,118 + MPMX19_00428 0.56 -1.4
430,118 + MPMX19_00428 0.56 +0.4
430,119 - MPMX19_00428 0.56 -0.7
430,119 - MPMX19_00428 0.56 -1.5
430,119 - MPMX19_00428 0.56 -1.0
430,119 - MPMX19_00428 0.56 -0.4
430,119 - MPMX19_00428 0.56 +2.0
430,119 - MPMX19_00428 0.56 -0.8
430,119 - MPMX19_00428 0.56 -0.8
430,445 + MPMX19_00428 0.77 -0.8
430,446 - MPMX19_00428 0.78 +1.4
430,446 - MPMX19_00428 0.78 +0.7
430,451 + MPMX19_00428 0.78 -1.0
430,451 + MPMX19_00428 0.78 -1.6
430,451 + MPMX19_00428 0.78 -1.3
430,451 + MPMX19_00428 0.78 +1.4
430,451 + MPMX19_00428 0.78 +0.2
430,451 + MPMX19_00428 0.78 -1.2
430,451 + MPMX19_00428 0.78 +0.2
430,451 + MPMX19_00428 0.78 -2.1
430,451 + MPMX19_00428 0.78 -0.3
430,451 + MPMX19_00428 0.78 -1.5
430,451 + MPMX19_00428 0.78 +1.5
430,451 + MPMX19_00428 0.78 -1.3
430,451 + MPMX19_00428 0.78 -1.4
430,452 - MPMX19_00428 0.78 +0.7
430,452 - MPMX19_00428 0.78 +0.4
430,452 - MPMX19_00428 0.78 -0.5
430,452 - MPMX19_00428 0.78 +0.2
430,452 - MPMX19_00428 0.78 +0.5
430,452 - MPMX19_00428 0.78 +0.3
430,452 - MPMX19_00428 0.78 -0.6
430,452 - MPMX19_00428 0.78 -0.0
430,493 + MPMX19_00428 0.81 -0.4
430,493 + MPMX19_00428 0.81 +0.4
430,493 + MPMX19_00428 0.81 -1.7
430,493 + MPMX19_00428 0.81 -0.4
430,493 + MPMX19_00428 0.81 +0.2
430,493 + MPMX19_00428 0.81 +0.4
430,493 + MPMX19_00428 0.81 -0.9
430,493 + MPMX19_00428 0.81 -0.7
430,493 + MPMX19_00428 0.81 -1.0
430,493 + MPMX19_00428 0.81 +0.2
430,493 + MPMX19_00428 0.81 -0.2
430,493 + MPMX19_00428 0.81 +0.7
430,493 + MPMX19_00428 0.81 -0.5
430,493 + MPMX19_00428 0.81 -0.4
430,493 + MPMX19_00428 0.81 -0.6
430,493 + MPMX19_00428 0.81 -0.7
430,493 + MPMX19_00428 0.81 +0.4
430,493 + MPMX19_00428 0.81 -0.9
430,494 - MPMX19_00428 0.81 +0.6
430,494 - MPMX19_00428 0.81 -1.6
430,494 - MPMX19_00428 0.81 -0.0
430,494 - MPMX19_00428 0.81 +0.1
430,494 - MPMX19_00428 0.81 +0.3
430,494 - MPMX19_00428 0.81 -2.4
430,494 - MPMX19_00428 0.81 +0.6
430,494 - MPMX19_00428 0.81 -1.8
430,494 - MPMX19_00428 0.81 -0.6
430,494 - MPMX19_00428 0.81 +1.3
430,494 - MPMX19_00428 0.81 +0.4
430,494 - MPMX19_00428 0.81 +0.4
430,494 - MPMX19_00428 0.81 -0.6
430,494 - MPMX19_00428 0.81 +0.5
430,494 - MPMX19_00428 0.81 -1.8
430,494 - MPMX19_00428 0.81 -0.4
430,494 - MPMX19_00428 0.81 -1.4
430,553 + MPMX19_00428 0.85 -0.4
430,553 + MPMX19_00428 0.85 -0.3
430,553 + MPMX19_00428 0.85 -1.4
430,553 + MPMX19_00428 0.85 +0.2
430,553 + MPMX19_00428 0.85 +0.1
430,554 - MPMX19_00428 0.85 -1.2
430,554 - MPMX19_00428 0.85 -0.0
430,554 - MPMX19_00428 0.85 -0.1
430,554 - MPMX19_00428 0.85 -1.1
430,554 - MPMX19_00428 0.85 -0.3
430,781 + -0.4
430,781 + +1.4
430,781 + -2.0
430,781 + -0.6
430,781 + +0.3
430,781 + -1.0
430,781 + -1.0
430,781 + +1.4
430,781 + -1.0
430,781 + -1.4
430,781 + +0.3
430,781 + +0.4
430,782 - -1.4
430,782 - +1.4
430,782 - -0.5
430,782 - -0.6
430,782 - +0.3
430,782 - -1.5
430,782 - +0.6
430,782 - -2.2
430,782 - +2.0
430,782 - -1.6
430,859 + +0.4
430,861 + +0.1
430,862 - +0.5
430,869 + -0.8
430,957 + MPMX19_00429 0.24 -2.0
430,957 + MPMX19_00429 0.24 -0.7
430,957 + MPMX19_00429 0.24 -1.4
430,957 + MPMX19_00429 0.24 -0.2
430,957 + MPMX19_00429 0.24 -1.6
430,958 - MPMX19_00429 0.24 -0.8
430,958 - MPMX19_00429 0.24 +0.2
430,958 - MPMX19_00429 0.24 +0.4
430,958 - MPMX19_00429 0.24 -1.7
430,958 - MPMX19_00429 0.24 +0.3
430,958 - MPMX19_00429 0.24 -0.7
430,958 - MPMX19_00429 0.24 -0.4
431,217 + -0.8
431,217 + -1.0
431,217 + +0.4
431,217 + +0.2
431,217 + +0.8
431,217 + +0.5
431,217 + -1.2
431,217 + -0.8
431,217 + -0.8
431,218 + -2.1
431,218 - -0.9
431,218 - -2.6
431,218 - +0.4
431,218 - +0.4
431,218 - +1.0
431,218 - -0.0
431,218 - -1.5
431,235 + -0.0
431,235 + -0.8
431,235 + +0.2
431,235 + -0.4
431,266 + -0.8
431,266 + +0.1
431,266 + +1.0
431,266 + -0.6
431,267 - -2.0
431,267 - -0.6
431,267 - -0.7
431,267 - -0.7
431,267 - -0.1
431,267 - -1.1
431,267 - -0.2
431,267 - -0.2
431,267 - -1.4
431,267 - -0.6
431,267 - -1.0
431,404 + MPMX19_00430 0.43 -0.0
431,404 + MPMX19_00430 0.43 +0.5
431,404 + MPMX19_00430 0.43 -1.2
431,404 + MPMX19_00430 0.43 -1.4
431,405 - MPMX19_00430 0.44 -1.0
431,405 - MPMX19_00430 0.44 -0.4
431,405 - MPMX19_00430 0.44 -0.4
431,405 - MPMX19_00430 0.44 -0.9
431,405 - MPMX19_00430 0.44 -0.1
431,405 - MPMX19_00430 0.44 -1.3
431,405 - MPMX19_00430 0.44 +0.1
431,405 - MPMX19_00430 0.44 +0.4
431,419 + MPMX19_00430 0.47 -0.2
431,419 + MPMX19_00430 0.47 -1.0
431,419 + MPMX19_00430 0.47 +1.5
431,419 + MPMX19_00430 0.47 -1.3
431,419 + MPMX19_00430 0.47 -1.9
431,420 - MPMX19_00430 0.48 +0.2
431,420 - MPMX19_00430 0.48 -0.4
431,488 + MPMX19_00430 0.66 -0.4
431,488 + MPMX19_00430 0.66 +1.0
431,488 + MPMX19_00430 0.66 +0.2
431,488 + MPMX19_00430 0.66 -1.4
431,488 + MPMX19_00430 0.66 -0.5
431,488 + MPMX19_00430 0.66 -0.5
431,488 + MPMX19_00430 0.66 -1.8
431,488 + MPMX19_00430 0.66 -0.5
431,488 + MPMX19_00430 0.66 +0.5
431,488 + MPMX19_00430 0.66 -0.7
431,488 + MPMX19_00430 0.66 -0.0
431,488 + MPMX19_00430 0.66 -0.3
431,489 - MPMX19_00430 0.67 -0.8
431,489 - MPMX19_00430 0.67 -0.8
431,489 - MPMX19_00430 0.67 -0.7
431,489 - MPMX19_00430 0.67 +0.4
431,489 - MPMX19_00430 0.67 -0.3
431,489 - MPMX19_00430 0.67 -1.2
431,489 - MPMX19_00430 0.67 -0.8
431,489 - MPMX19_00430 0.67 +0.2
431,489 - MPMX19_00430 0.67 -1.0
431,489 - MPMX19_00430 0.67 -0.6
431,489 - MPMX19_00430 0.67 -2.1
431,675 - +0.3
431,722 + MPMX19_00431 0.14 -1.2
431,722 + MPMX19_00431 0.14 -2.2
431,722 + MPMX19_00431 0.14 +0.8
431,722 + MPMX19_00431 0.14 -0.8
431,722 + MPMX19_00431 0.14 -0.9
431,722 + MPMX19_00431 0.14 -0.8
431,722 + MPMX19_00431 0.14 +0.7
431,722 + MPMX19_00431 0.14 +0.4
431,722 + MPMX19_00431 0.14 -0.2
431,722 + MPMX19_00431 0.14 -0.0
431,723 - MPMX19_00431 0.14 +0.0
431,723 - MPMX19_00431 0.14 -1.0
431,723 - MPMX19_00431 0.14 -0.4
431,723 - MPMX19_00431 0.14 -0.0
431,723 - MPMX19_00431 0.14 -1.8
431,723 - MPMX19_00431 0.14 -0.8
431,723 - MPMX19_00431 0.14 -0.8
431,723 - MPMX19_00431 0.14 +1.0
431,729 + MPMX19_00431 0.15 -0.2
431,729 + MPMX19_00431 0.15 -0.6
431,729 + MPMX19_00431 0.15 -0.8
431,729 + MPMX19_00431 0.15 -0.6
431,730 - MPMX19_00431 0.15 -0.6
431,730 - MPMX19_00431 0.15 +0.4
431,842 + MPMX19_00431 0.31 -1.8
431,842 + MPMX19_00431 0.31 +0.4
431,843 - MPMX19_00431 0.31 +0.2
431,843 - MPMX19_00431 0.31 -0.1
431,843 - MPMX19_00431 0.31 -0.5
431,843 - MPMX19_00431 0.31 -0.4
431,843 - MPMX19_00431 0.31 +0.2

Or see this region's nucleotide sequence