Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00308 and MPMX19_00309 are separated by 9 nucleotides MPMX19_00309 and MPMX19_00310 are separated by 213 nucleotides
MPMX19_00308: MPMX19_00308 - NAD-dependent methanol dehydrogenase, at 310,780 to 312,096
_00308
MPMX19_00309: MPMX19_00309 - hypothetical protein, at 312,106 to 312,552
_00309
MPMX19_00310: MPMX19_00310 - 3-methylmercaptopropionyl-CoA dehydrogenase, at 312,766 to 314,562
_00310
Position (kb) 312
313 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 311.152 kb on + strand, within MPMX19_00308 at 311.152 kb on + strand, within MPMX19_00308 at 311.153 kb on - strand, within MPMX19_00308 at 311.153 kb on - strand, within MPMX19_00308 at 311.153 kb on - strand, within MPMX19_00308 at 311.153 kb on - strand, within MPMX19_00308 at 311.153 kb on - strand, within MPMX19_00308 at 311.182 kb on + strand, within MPMX19_00308 at 311.182 kb on + strand, within MPMX19_00308 at 311.182 kb on + strand, within MPMX19_00308 at 311.182 kb on + strand, within MPMX19_00308 at 311.182 kb on + strand, within MPMX19_00308 at 311.182 kb on + strand, within MPMX19_00308 at 311.182 kb on + strand, within MPMX19_00308 at 311.182 kb on + strand, within MPMX19_00308 at 311.182 kb on + strand, within MPMX19_00308 at 311.182 kb on + strand, within MPMX19_00308 at 311.182 kb on + strand, within MPMX19_00308 at 311.182 kb on + strand, within MPMX19_00308 at 311.182 kb on + strand, within MPMX19_00308 at 311.182 kb on + strand, within MPMX19_00308 at 311.182 kb on + strand, within MPMX19_00308 at 311.182 kb on + strand, within MPMX19_00308 at 311.182 kb on + strand, within MPMX19_00308 at 311.182 kb on + strand, within MPMX19_00308 at 311.182 kb on + strand, within MPMX19_00308 at 311.183 kb on - strand, within MPMX19_00308 at 311.183 kb on - strand, within MPMX19_00308 at 311.183 kb on - strand, within MPMX19_00308 at 311.183 kb on - strand, within MPMX19_00308 at 311.183 kb on - strand, within MPMX19_00308 at 311.183 kb on - strand, within MPMX19_00308 at 311.183 kb on - strand, within MPMX19_00308 at 311.183 kb on - strand, within MPMX19_00308 at 311.183 kb on - strand, within MPMX19_00308 at 311.183 kb on - strand, within MPMX19_00308 at 311.183 kb on - strand, within MPMX19_00308 at 311.183 kb on - strand, within MPMX19_00308 at 311.183 kb on - strand, within MPMX19_00308 at 311.183 kb on - strand, within MPMX19_00308 at 311.183 kb on - strand, within MPMX19_00308 at 311.183 kb on - strand, within MPMX19_00308 at 311.338 kb on + strand, within MPMX19_00308 at 311.338 kb on + strand, within MPMX19_00308 at 311.338 kb on + strand, within MPMX19_00308 at 311.338 kb on + strand, within MPMX19_00308 at 311.338 kb on + strand, within MPMX19_00308 at 311.338 kb on + strand, within MPMX19_00308 at 311.339 kb on - strand, within MPMX19_00308 at 311.339 kb on - strand, within MPMX19_00308 at 311.339 kb on - strand, within MPMX19_00308 at 311.339 kb on - strand, within MPMX19_00308 at 311.339 kb on - strand, within MPMX19_00308 at 311.506 kb on + strand, within MPMX19_00308 at 311.506 kb on + strand, within MPMX19_00308 at 311.507 kb on - strand, within MPMX19_00308 at 311.507 kb on - strand, within MPMX19_00308 at 311.692 kb on + strand, within MPMX19_00308 at 311.692 kb on + strand, within MPMX19_00308 at 311.692 kb on + strand, within MPMX19_00308 at 311.692 kb on + strand, within MPMX19_00308 at 311.693 kb on - strand, within MPMX19_00308 at 311.693 kb on - strand, within MPMX19_00308 at 311.734 kb on + strand, within MPMX19_00308 at 311.735 kb on - strand, within MPMX19_00308 at 311.735 kb on - strand, within MPMX19_00308 at 311.735 kb on - strand, within MPMX19_00308 at 312.070 kb on + strand at 312.070 kb on + strand at 312.070 kb on + strand at 312.070 kb on + strand at 312.070 kb on + strand at 312.070 kb on + strand at 312.071 kb on - strand at 312.071 kb on - strand at 312.071 kb on - strand at 312.071 kb on - strand at 312.088 kb on + strand at 312.088 kb on + strand at 312.089 kb on - strand at 312.200 kb on + strand, within MPMX19_00309 at 312.200 kb on + strand, within MPMX19_00309 at 312.200 kb on + strand, within MPMX19_00309 at 312.200 kb on + strand, within MPMX19_00309 at 312.200 kb on + strand, within MPMX19_00309 at 312.200 kb on + strand, within MPMX19_00309 at 312.200 kb on + strand, within MPMX19_00309 at 312.200 kb on + strand, within MPMX19_00309 at 312.200 kb on + strand, within MPMX19_00309 at 312.200 kb on + strand, within MPMX19_00309 at 312.200 kb on + strand, within MPMX19_00309 at 312.200 kb on + strand, within MPMX19_00309 at 312.200 kb on + strand, within MPMX19_00309 at 312.200 kb on + strand, within MPMX19_00309 at 312.201 kb on - strand, within MPMX19_00309 at 312.201 kb on - strand, within MPMX19_00309 at 312.201 kb on - strand, within MPMX19_00309 at 312.201 kb on - strand, within MPMX19_00309 at 312.201 kb on - strand, within MPMX19_00309 at 312.201 kb on - strand, within MPMX19_00309 at 312.201 kb on - strand, within MPMX19_00309 at 312.201 kb on - strand, within MPMX19_00309 at 312.201 kb on - strand, within MPMX19_00309 at 312.201 kb on - strand, within MPMX19_00309 at 312.201 kb on - strand, within MPMX19_00309 at 312.201 kb on - strand, within MPMX19_00309 at 312.201 kb on - strand, within MPMX19_00309 at 312.201 kb on - strand, within MPMX19_00309 at 312.314 kb on + strand, within MPMX19_00309 at 312.314 kb on + strand, within MPMX19_00309 at 312.314 kb on + strand, within MPMX19_00309 at 312.314 kb on + strand, within MPMX19_00309 at 312.314 kb on + strand, within MPMX19_00309 at 312.315 kb on - strand, within MPMX19_00309 at 312.315 kb on - strand, within MPMX19_00309 at 312.315 kb on - strand, within MPMX19_00309 at 312.455 kb on + strand, within MPMX19_00309 at 312.455 kb on + strand, within MPMX19_00309 at 312.455 kb on + strand, within MPMX19_00309 at 312.455 kb on + strand, within MPMX19_00309 at 312.455 kb on + strand, within MPMX19_00309 at 312.455 kb on + strand, within MPMX19_00309 at 312.456 kb on - strand, within MPMX19_00309 at 312.456 kb on - strand, within MPMX19_00309 at 312.456 kb on - strand, within MPMX19_00309 at 312.597 kb on + strand at 312.598 kb on - strand at 312.598 kb on - strand at 312.630 kb on + strand at 312.630 kb on + strand at 312.630 kb on + strand at 312.630 kb on + strand at 312.630 kb on + strand at 312.630 kb on + strand at 312.630 kb on + strand at 312.630 kb on + strand at 312.630 kb on + strand at 312.630 kb on + strand at 312.630 kb on + strand at 312.630 kb on + strand at 312.630 kb on + strand at 312.631 kb on - strand at 312.631 kb on - strand at 312.631 kb on - strand at 312.631 kb on - strand at 312.631 kb on - strand at 312.631 kb on - strand at 312.631 kb on - strand at 312.631 kb on - strand at 312.860 kb on + strand at 312.860 kb on + strand at 312.861 kb on - strand at 312.861 kb on - strand at 312.861 kb on - strand at 312.861 kb on - strand at 312.975 kb on + strand, within MPMX19_00310 at 312.975 kb on + strand, within MPMX19_00310 at 312.975 kb on + strand, within MPMX19_00310 at 312.976 kb on - strand, within MPMX19_00310 at 312.992 kb on + strand, within MPMX19_00310 at 312.992 kb on + strand, within MPMX19_00310 at 312.992 kb on + strand, within MPMX19_00310 at 312.993 kb on - strand, within MPMX19_00310 at 312.993 kb on - strand, within MPMX19_00310 at 313.250 kb on + strand, within MPMX19_00310 at 313.250 kb on + strand, within MPMX19_00310 at 313.250 kb on + strand, within MPMX19_00310 at 313.250 kb on + strand, within MPMX19_00310 at 313.250 kb on + strand, within MPMX19_00310 at 313.250 kb on + strand, within MPMX19_00310 at 313.251 kb on - strand, within MPMX19_00310 at 313.251 kb on - strand, within MPMX19_00310 at 313.251 kb on - strand, within MPMX19_00310 at 313.251 kb on - strand, within MPMX19_00310 at 313.251 kb on - strand, within MPMX19_00310 at 313.472 kb on + strand, within MPMX19_00310 at 313.472 kb on + strand, within MPMX19_00310 at 313.472 kb on + strand, within MPMX19_00310 at 313.472 kb on + strand, within MPMX19_00310 at 313.472 kb on + strand, within MPMX19_00310 at 313.472 kb on + strand, within MPMX19_00310 at 313.472 kb on + strand, within MPMX19_00310 at 313.472 kb on + strand, within MPMX19_00310 at 313.472 kb on + strand, within MPMX19_00310 at 313.472 kb on + strand, within MPMX19_00310 at 313.472 kb on + strand, within MPMX19_00310 at 313.473 kb on - strand, within MPMX19_00310 at 313.473 kb on - strand, within MPMX19_00310 at 313.473 kb on - strand, within MPMX19_00310 at 313.473 kb on - strand, within MPMX19_00310 at 313.473 kb on - strand, within MPMX19_00310 at 313.473 kb on - strand, within MPMX19_00310 at 313.473 kb on - strand, within MPMX19_00310 at 313.473 kb on - strand, within MPMX19_00310 at 313.473 kb on - strand, within MPMX19_00310 at 313.473 kb on - strand, within MPMX19_00310 at 313.473 kb on - strand, within MPMX19_00310 at 313.473 kb on - strand, within MPMX19_00310 at 313.473 kb on - strand, within MPMX19_00310 at 313.473 kb on - strand, within MPMX19_00310 at 313.473 kb on - strand, within MPMX19_00310
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 311,152 + MPMX19_00308 0.28 -0.6 311,152 + MPMX19_00308 0.28 -0.8 311,153 - MPMX19_00308 0.28 -1.2 311,153 - MPMX19_00308 0.28 -0.0 311,153 - MPMX19_00308 0.28 +1.3 311,153 - MPMX19_00308 0.28 +1.0 311,153 - MPMX19_00308 0.28 -1.2 311,182 + MPMX19_00308 0.31 -0.5 311,182 + MPMX19_00308 0.31 -0.6 311,182 + MPMX19_00308 0.31 -0.8 311,182 + MPMX19_00308 0.31 +0.4 311,182 + MPMX19_00308 0.31 -0.1 311,182 + MPMX19_00308 0.31 +0.3 311,182 + MPMX19_00308 0.31 -2.7 311,182 + MPMX19_00308 0.31 +1.2 311,182 + MPMX19_00308 0.31 -0.2 311,182 + MPMX19_00308 0.31 -0.3 311,182 + MPMX19_00308 0.31 -1.2 311,182 + MPMX19_00308 0.31 -0.1 311,182 + MPMX19_00308 0.31 +0.2 311,182 + MPMX19_00308 0.31 -0.8 311,182 + MPMX19_00308 0.31 +0.2 311,182 + MPMX19_00308 0.31 -0.2 311,182 + MPMX19_00308 0.31 +0.9 311,182 + MPMX19_00308 0.31 -0.8 311,182 + MPMX19_00308 0.31 +0.8 311,183 - MPMX19_00308 0.31 +0.1 311,183 - MPMX19_00308 0.31 +1.7 311,183 - MPMX19_00308 0.31 -0.3 311,183 - MPMX19_00308 0.31 +1.2 311,183 - MPMX19_00308 0.31 -0.4 311,183 - MPMX19_00308 0.31 +1.2 311,183 - MPMX19_00308 0.31 -0.8 311,183 - MPMX19_00308 0.31 -2.3 311,183 - MPMX19_00308 0.31 -1.2 311,183 - MPMX19_00308 0.31 +0.4 311,183 - MPMX19_00308 0.31 +0.2 311,183 - MPMX19_00308 0.31 -0.8 311,183 - MPMX19_00308 0.31 +0.8 311,183 - MPMX19_00308 0.31 -1.0 311,183 - MPMX19_00308 0.31 +0.2 311,183 - MPMX19_00308 0.31 -0.8 311,338 + MPMX19_00308 0.42 +1.5 311,338 + MPMX19_00308 0.42 -0.7 311,338 + MPMX19_00308 0.42 -0.1 311,338 + MPMX19_00308 0.42 -1.0 311,338 + MPMX19_00308 0.42 +1.9 311,338 + MPMX19_00308 0.42 -0.0 311,339 - MPMX19_00308 0.42 -0.4 311,339 - MPMX19_00308 0.42 -0.5 311,339 - MPMX19_00308 0.42 +0.1 311,339 - MPMX19_00308 0.42 -0.3 311,339 - MPMX19_00308 0.42 -1.6 311,506 + MPMX19_00308 0.55 -1.2 311,506 + MPMX19_00308 0.55 +0.6 311,507 - MPMX19_00308 0.55 +0.3 311,507 - MPMX19_00308 0.55 +2.0 311,692 + MPMX19_00308 0.69 +0.2 311,692 + MPMX19_00308 0.69 -0.0 311,692 + MPMX19_00308 0.69 +0.6 311,692 + MPMX19_00308 0.69 +0.9 311,693 - MPMX19_00308 0.69 +0.0 311,693 - MPMX19_00308 0.69 -0.7 311,734 + MPMX19_00308 0.72 +1.3 311,735 - MPMX19_00308 0.73 -1.0 311,735 - MPMX19_00308 0.73 -1.0 311,735 - MPMX19_00308 0.73 +1.1 312,070 + -0.8 312,070 + -0.1 312,070 + +1.7 312,070 + +0.2 312,070 + +0.2 312,070 + -1.3 312,071 - +1.6 312,071 - -0.1 312,071 - -0.8 312,071 - +0.4 312,088 + -1.2 312,088 + -0.7 312,089 - -1.6 312,200 + MPMX19_00309 0.21 +0.6 312,200 + MPMX19_00309 0.21 +0.9 312,200 + MPMX19_00309 0.21 -0.3 312,200 + MPMX19_00309 0.21 -0.1 312,200 + MPMX19_00309 0.21 -1.2 312,200 + MPMX19_00309 0.21 -1.0 312,200 + MPMX19_00309 0.21 -0.2 312,200 + MPMX19_00309 0.21 +0.2 312,200 + MPMX19_00309 0.21 +1.8 312,200 + MPMX19_00309 0.21 +0.2 312,200 + MPMX19_00309 0.21 -0.7 312,200 + MPMX19_00309 0.21 +0.5 312,200 + MPMX19_00309 0.21 -0.3 312,200 + MPMX19_00309 0.21 +0.1 312,201 - MPMX19_00309 0.21 -0.2 312,201 - MPMX19_00309 0.21 -0.8 312,201 - MPMX19_00309 0.21 +0.2 312,201 - MPMX19_00309 0.21 -0.8 312,201 - MPMX19_00309 0.21 -0.6 312,201 - MPMX19_00309 0.21 -0.8 312,201 - MPMX19_00309 0.21 -0.9 312,201 - MPMX19_00309 0.21 -1.2 312,201 - MPMX19_00309 0.21 +0.3 312,201 - MPMX19_00309 0.21 +1.0 312,201 - MPMX19_00309 0.21 +0.2 312,201 - MPMX19_00309 0.21 -0.0 312,201 - MPMX19_00309 0.21 +0.3 312,201 - MPMX19_00309 0.21 -1.6 312,314 + MPMX19_00309 0.47 +1.0 312,314 + MPMX19_00309 0.47 +0.3 312,314 + MPMX19_00309 0.47 -0.2 312,314 + MPMX19_00309 0.47 +1.0 312,314 + MPMX19_00309 0.47 +0.9 312,315 - MPMX19_00309 0.47 -0.0 312,315 - MPMX19_00309 0.47 -0.3 312,315 - MPMX19_00309 0.47 +0.7 312,455 + MPMX19_00309 0.78 -0.3 312,455 + MPMX19_00309 0.78 -2.1 312,455 + MPMX19_00309 0.78 -1.5 312,455 + MPMX19_00309 0.78 -0.2 312,455 + MPMX19_00309 0.78 -1.0 312,455 + MPMX19_00309 0.78 +0.8 312,456 - MPMX19_00309 0.78 -0.6 312,456 - MPMX19_00309 0.78 +0.1 312,456 - MPMX19_00309 0.78 -0.6 312,597 + -0.3 312,598 - -0.9 312,598 - -0.3 312,630 + -0.1 312,630 + -0.6 312,630 + +0.3 312,630 + -1.7 312,630 + +0.4 312,630 + -0.2 312,630 + -1.8 312,630 + +0.3 312,630 + -0.6 312,630 + +0.2 312,630 + +0.5 312,630 + -1.4 312,630 + -1.7 312,631 - +0.3 312,631 - -0.5 312,631 - +0.6 312,631 - +0.8 312,631 - +1.0 312,631 - -0.6 312,631 - -0.8 312,631 - +0.7 312,860 + -0.0 312,860 + +0.3 312,861 - -0.4 312,861 - -0.3 312,861 - -1.1 312,861 - -0.3 312,975 + MPMX19_00310 0.12 +0.1 312,975 + MPMX19_00310 0.12 +0.9 312,975 + MPMX19_00310 0.12 +0.1 312,976 - MPMX19_00310 0.12 +0.9 312,992 + MPMX19_00310 0.13 -0.0 312,992 + MPMX19_00310 0.13 -1.0 312,992 + MPMX19_00310 0.13 -3.1 312,993 - MPMX19_00310 0.13 -0.0 312,993 - MPMX19_00310 0.13 +0.6 313,250 + MPMX19_00310 0.27 -0.3 313,250 + MPMX19_00310 0.27 -0.6 313,250 + MPMX19_00310 0.27 -1.0 313,250 + MPMX19_00310 0.27 -0.2 313,250 + MPMX19_00310 0.27 -0.4 313,250 + MPMX19_00310 0.27 -1.0 313,251 - MPMX19_00310 0.27 +2.0 313,251 - MPMX19_00310 0.27 +0.2 313,251 - MPMX19_00310 0.27 -1.0 313,251 - MPMX19_00310 0.27 -1.4 313,251 - MPMX19_00310 0.27 +0.1 313,472 + MPMX19_00310 0.39 -0.1 313,472 + MPMX19_00310 0.39 +0.1 313,472 + MPMX19_00310 0.39 -0.1 313,472 + MPMX19_00310 0.39 -0.3 313,472 + MPMX19_00310 0.39 +0.2 313,472 + MPMX19_00310 0.39 -0.0 313,472 + MPMX19_00310 0.39 +0.3 313,472 + MPMX19_00310 0.39 -0.3 313,472 + MPMX19_00310 0.39 +0.7 313,472 + MPMX19_00310 0.39 -0.3 313,472 + MPMX19_00310 0.39 +0.3 313,473 - MPMX19_00310 0.39 -1.0 313,473 - MPMX19_00310 0.39 -0.8 313,473 - MPMX19_00310 0.39 +0.5 313,473 - MPMX19_00310 0.39 -0.3 313,473 - MPMX19_00310 0.39 +0.5 313,473 - MPMX19_00310 0.39 -1.2 313,473 - MPMX19_00310 0.39 -0.8 313,473 - MPMX19_00310 0.39 -0.0 313,473 - MPMX19_00310 0.39 +0.6 313,473 - MPMX19_00310 0.39 +1.1 313,473 - MPMX19_00310 0.39 -0.6 313,473 - MPMX19_00310 0.39 +0.4 313,473 - MPMX19_00310 0.39 +0.9 313,473 - MPMX19_00310 0.39 +1.7 313,473 - MPMX19_00310 0.39 -0.9
Or see this region's nucleotide sequence