Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_00219

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_00217 and MPMX19_00218 are separated by 241 nucleotidesMPMX19_00218 and MPMX19_00219 are separated by 17 nucleotidesMPMX19_00219 and MPMX19_00220 are separated by 423 nucleotides MPMX19_00217: MPMX19_00217 - 60 kDa chaperonin 5, at 218,757 to 220,400 _00217 MPMX19_00218: MPMX19_00218 - hypothetical protein, at 220,642 to 221,007 _00218 MPMX19_00219: MPMX19_00219 - hypothetical protein, at 221,025 to 221,942 _00219 MPMX19_00220: MPMX19_00220 - Transcriptional regulatory protein FixJ, at 222,366 to 223,079 _00220 Position (kb) 221 222Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 220.561 kb on + strandat 220.561 kb on + strandat 220.562 kb on - strandat 220.617 kb on + strandat 220.618 kb on - strandat 220.618 kb on - strandat 221.301 kb on + strand, within MPMX19_00219at 221.301 kb on + strand, within MPMX19_00219at 221.301 kb on + strand, within MPMX19_00219at 221.301 kb on + strand, within MPMX19_00219at 221.301 kb on + strand, within MPMX19_00219at 221.301 kb on + strand, within MPMX19_00219at 221.301 kb on + strand, within MPMX19_00219at 221.301 kb on + strand, within MPMX19_00219at 221.301 kb on + strand, within MPMX19_00219at 221.301 kb on + strand, within MPMX19_00219at 221.301 kb on + strand, within MPMX19_00219at 221.301 kb on + strand, within MPMX19_00219at 221.301 kb on + strand, within MPMX19_00219at 221.301 kb on + strand, within MPMX19_00219at 221.301 kb on + strand, within MPMX19_00219at 221.301 kb on + strand, within MPMX19_00219at 221.301 kb on + strand, within MPMX19_00219at 221.301 kb on + strand, within MPMX19_00219at 221.301 kb on + strand, within MPMX19_00219at 221.301 kb on + strand, within MPMX19_00219at 221.301 kb on + strand, within MPMX19_00219at 221.301 kb on + strand, within MPMX19_00219at 221.301 kb on + strand, within MPMX19_00219at 221.301 kb on + strand, within MPMX19_00219at 221.301 kb on + strand, within MPMX19_00219at 221.302 kb on - strand, within MPMX19_00219at 221.302 kb on - strand, within MPMX19_00219at 221.302 kb on - strand, within MPMX19_00219at 221.302 kb on - strand, within MPMX19_00219at 221.302 kb on - strand, within MPMX19_00219at 221.302 kb on - strand, within MPMX19_00219at 221.302 kb on - strand, within MPMX19_00219at 221.302 kb on - strand, within MPMX19_00219at 221.302 kb on - strand, within MPMX19_00219at 221.302 kb on - strand, within MPMX19_00219at 221.302 kb on - strand, within MPMX19_00219at 221.302 kb on - strand, within MPMX19_00219at 221.302 kb on - strand, within MPMX19_00219at 221.302 kb on - strand, within MPMX19_00219at 221.302 kb on - strand, within MPMX19_00219at 221.302 kb on - strand, within MPMX19_00219at 221.302 kb on - strand, within MPMX19_00219at 221.302 kb on - strand, within MPMX19_00219at 221.302 kb on - strand, within MPMX19_00219at 221.316 kb on + strand, within MPMX19_00219at 221.316 kb on + strand, within MPMX19_00219at 221.316 kb on + strand, within MPMX19_00219at 221.316 kb on + strand, within MPMX19_00219at 221.316 kb on + strand, within MPMX19_00219at 221.316 kb on + strand, within MPMX19_00219at 221.316 kb on + strand, within MPMX19_00219at 221.317 kb on - strand, within MPMX19_00219at 221.317 kb on - strand, within MPMX19_00219at 221.317 kb on - strand, within MPMX19_00219at 221.317 kb on - strand, within MPMX19_00219at 221.317 kb on - strand, within MPMX19_00219at 221.317 kb on - strand, within MPMX19_00219at 221.317 kb on - strand, within MPMX19_00219at 221.317 kb on - strand, within MPMX19_00219at 221.556 kb on + strand, within MPMX19_00219at 221.556 kb on + strand, within MPMX19_00219at 221.556 kb on + strand, within MPMX19_00219at 221.556 kb on + strand, within MPMX19_00219at 221.556 kb on + strand, within MPMX19_00219at 221.556 kb on + strand, within MPMX19_00219at 221.556 kb on + strand, within MPMX19_00219at 221.556 kb on + strand, within MPMX19_00219at 221.556 kb on + strand, within MPMX19_00219at 221.556 kb on + strand, within MPMX19_00219at 221.556 kb on + strand, within MPMX19_00219at 221.556 kb on + strand, within MPMX19_00219at 221.556 kb on + strand, within MPMX19_00219at 221.556 kb on + strand, within MPMX19_00219at 221.557 kb on - strand, within MPMX19_00219at 221.557 kb on - strand, within MPMX19_00219at 221.557 kb on - strand, within MPMX19_00219at 221.557 kb on - strand, within MPMX19_00219at 221.557 kb on - strand, within MPMX19_00219at 221.557 kb on - strand, within MPMX19_00219at 221.557 kb on - strand, within MPMX19_00219at 221.557 kb on - strand, within MPMX19_00219at 221.557 kb on - strand, within MPMX19_00219at 221.557 kb on - strand, within MPMX19_00219at 221.557 kb on - strand, within MPMX19_00219at 221.557 kb on - strand, within MPMX19_00219at 221.557 kb on - strand, within MPMX19_00219at 221.557 kb on - strand, within MPMX19_00219at 221.557 kb on - strand, within MPMX19_00219at 221.557 kb on - strand, within MPMX19_00219at 221.557 kb on - strand, within MPMX19_00219at 221.557 kb on - strand, within MPMX19_00219at 221.565 kb on + strand, within MPMX19_00219at 221.565 kb on + strand, within MPMX19_00219at 221.565 kb on + strand, within MPMX19_00219at 221.565 kb on + strand, within MPMX19_00219at 221.565 kb on + strand, within MPMX19_00219at 221.565 kb on + strand, within MPMX19_00219at 221.566 kb on - strand, within MPMX19_00219at 221.566 kb on - strand, within MPMX19_00219at 221.566 kb on - strand, within MPMX19_00219at 221.566 kb on - strand, within MPMX19_00219at 221.566 kb on - strand, within MPMX19_00219at 221.566 kb on - strand, within MPMX19_00219at 221.658 kb on + strand, within MPMX19_00219at 221.658 kb on + strand, within MPMX19_00219at 221.658 kb on + strand, within MPMX19_00219at 221.658 kb on + strand, within MPMX19_00219at 221.658 kb on + strand, within MPMX19_00219at 221.658 kb on + strand, within MPMX19_00219at 221.658 kb on + strand, within MPMX19_00219at 221.658 kb on + strand, within MPMX19_00219at 221.658 kb on + strand, within MPMX19_00219at 221.658 kb on + strand, within MPMX19_00219at 221.658 kb on + strand, within MPMX19_00219at 221.658 kb on + strand, within MPMX19_00219at 221.658 kb on + strand, within MPMX19_00219at 221.658 kb on + strand, within MPMX19_00219at 221.658 kb on + strand, within MPMX19_00219at 221.658 kb on + strand, within MPMX19_00219at 221.658 kb on + strand, within MPMX19_00219at 221.658 kb on + strand, within MPMX19_00219at 221.658 kb on + strand, within MPMX19_00219at 221.658 kb on + strand, within MPMX19_00219at 221.658 kb on + strand, within MPMX19_00219at 221.658 kb on + strand, within MPMX19_00219at 221.658 kb on + strand, within MPMX19_00219at 221.658 kb on + strand, within MPMX19_00219at 221.658 kb on + strand, within MPMX19_00219at 221.659 kb on + strand, within MPMX19_00219at 221.659 kb on - strand, within MPMX19_00219at 221.659 kb on - strand, within MPMX19_00219at 221.659 kb on - strand, within MPMX19_00219at 221.659 kb on - strand, within MPMX19_00219at 221.659 kb on - strand, within MPMX19_00219at 221.659 kb on - strand, within MPMX19_00219at 221.659 kb on - strand, within MPMX19_00219at 221.659 kb on - strand, within MPMX19_00219at 221.659 kb on - strand, within MPMX19_00219at 221.659 kb on - strand, within MPMX19_00219at 221.659 kb on - strand, within MPMX19_00219at 221.659 kb on - strand, within MPMX19_00219at 221.659 kb on - strand, within MPMX19_00219at 221.659 kb on - strand, within MPMX19_00219at 221.724 kb on + strand, within MPMX19_00219at 221.724 kb on + strand, within MPMX19_00219at 221.725 kb on - strand, within MPMX19_00219at 221.725 kb on - strand, within MPMX19_00219at 221.725 kb on - strand, within MPMX19_00219at 221.725 kb on - strand, within MPMX19_00219at 221.754 kb on + strand, within MPMX19_00219at 221.754 kb on + strand, within MPMX19_00219at 221.754 kb on + strand, within MPMX19_00219at 221.754 kb on + strand, within MPMX19_00219at 221.754 kb on + strand, within MPMX19_00219at 221.755 kb on - strand, within MPMX19_00219at 221.755 kb on - strand, within MPMX19_00219at 221.755 kb on - strand, within MPMX19_00219at 221.755 kb on - strand, within MPMX19_00219at 221.755 kb on - strand, within MPMX19_00219at 221.755 kb on - strand, within MPMX19_00219at 221.755 kb on - strand, within MPMX19_00219at 221.755 kb on - strand, within MPMX19_00219at 221.755 kb on - strand, within MPMX19_00219at 221.755 kb on - strand, within MPMX19_00219at 221.877 kb on + strandat 221.877 kb on + strandat 221.877 kb on + strandat 221.877 kb on + strandat 221.877 kb on + strandat 221.877 kb on + strandat 221.877 kb on + strandat 221.877 kb on + strandat 221.878 kb on - strandat 221.878 kb on - strandat 221.878 kb on - strandat 221.878 kb on - strandat 221.878 kb on - strandat 221.900 kb on - strandat 221.983 kb on + strandat 221.983 kb on + strandat 221.983 kb on + strandat 221.983 kb on + strandat 221.983 kb on + strandat 221.983 kb on + strandat 221.983 kb on + strandat 221.983 kb on + strandat 221.983 kb on + strandat 221.984 kb on - strandat 221.984 kb on - strandat 221.984 kb on - strandat 221.984 kb on - strandat 221.984 kb on - strandat 221.984 kb on - strandat 221.984 kb on - strandat 221.984 kb on - strandat 221.984 kb on - strandat 221.999 kb on + strandat 222.000 kb on - strandat 222.057 kb on + strandat 222.088 kb on + strandat 222.088 kb on + strandat 222.088 kb on + strandat 222.089 kb on - strandat 222.118 kb on + strandat 222.118 kb on + strandat 222.119 kb on - strandat 222.202 kb on + strandat 222.202 kb on + strandat 222.203 kb on - strandat 222.203 kb on - strandat 222.203 kb on - strandat 222.203 kb on - strandat 222.203 kb on - strandat 222.203 kb on - strandat 222.205 kb on + strandat 222.222 kb on + strandat 222.222 kb on + strandat 222.222 kb on + strandat 222.223 kb on - strandat 222.223 kb on - strandat 222.275 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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220,561 + -0.9
220,561 + +0.5
220,562 - -0.6
220,617 + +0.8
220,618 - -0.6
220,618 - +0.0
221,301 + MPMX19_00219 0.30 +0.3
221,301 + MPMX19_00219 0.30 -1.4
221,301 + MPMX19_00219 0.30 -0.9
221,301 + MPMX19_00219 0.30 -0.6
221,301 + MPMX19_00219 0.30 -1.1
221,301 + MPMX19_00219 0.30 -0.4
221,301 + MPMX19_00219 0.30 -0.8
221,301 + MPMX19_00219 0.30 -0.4
221,301 + MPMX19_00219 0.30 -1.4
221,301 + MPMX19_00219 0.30 -2.0
221,301 + MPMX19_00219 0.30 -1.1
221,301 + MPMX19_00219 0.30 -0.8
221,301 + MPMX19_00219 0.30 -1.0
221,301 + MPMX19_00219 0.30 +0.2
221,301 + MPMX19_00219 0.30 -0.1
221,301 + MPMX19_00219 0.30 -1.1
221,301 + MPMX19_00219 0.30 +0.0
221,301 + MPMX19_00219 0.30 +0.0
221,301 + MPMX19_00219 0.30 -0.3
221,301 + MPMX19_00219 0.30 +1.0
221,301 + MPMX19_00219 0.30 -0.5
221,301 + MPMX19_00219 0.30 -2.2
221,301 + MPMX19_00219 0.30 +0.2
221,301 + MPMX19_00219 0.30 +0.6
221,301 + MPMX19_00219 0.30 -0.1
221,302 - MPMX19_00219 0.30 -2.4
221,302 - MPMX19_00219 0.30 +0.2
221,302 - MPMX19_00219 0.30 +1.2
221,302 - MPMX19_00219 0.30 +0.1
221,302 - MPMX19_00219 0.30 +2.0
221,302 - MPMX19_00219 0.30 +0.4
221,302 - MPMX19_00219 0.30 +0.1
221,302 - MPMX19_00219 0.30 +0.4
221,302 - MPMX19_00219 0.30 +0.4
221,302 - MPMX19_00219 0.30 -0.6
221,302 - MPMX19_00219 0.30 +0.8
221,302 - MPMX19_00219 0.30 -0.0
221,302 - MPMX19_00219 0.30 +1.0
221,302 - MPMX19_00219 0.30 +0.4
221,302 - MPMX19_00219 0.30 -0.6
221,302 - MPMX19_00219 0.30 -1.6
221,302 - MPMX19_00219 0.30 -1.6
221,302 - MPMX19_00219 0.30 -0.4
221,302 - MPMX19_00219 0.30 +0.0
221,316 + MPMX19_00219 0.32 -2.8
221,316 + MPMX19_00219 0.32 -0.8
221,316 + MPMX19_00219 0.32 +1.2
221,316 + MPMX19_00219 0.32 +1.8
221,316 + MPMX19_00219 0.32 -0.5
221,316 + MPMX19_00219 0.32 +1.4
221,316 + MPMX19_00219 0.32 -0.2
221,317 - MPMX19_00219 0.32 -0.8
221,317 - MPMX19_00219 0.32 -1.1
221,317 - MPMX19_00219 0.32 -0.9
221,317 - MPMX19_00219 0.32 -1.0
221,317 - MPMX19_00219 0.32 +0.0
221,317 - MPMX19_00219 0.32 -0.1
221,317 - MPMX19_00219 0.32 -1.1
221,317 - MPMX19_00219 0.32 -0.7
221,556 + MPMX19_00219 0.58 -0.1
221,556 + MPMX19_00219 0.58 -0.8
221,556 + MPMX19_00219 0.58 -1.1
221,556 + MPMX19_00219 0.58 +0.0
221,556 + MPMX19_00219 0.58 +1.0
221,556 + MPMX19_00219 0.58 -1.3
221,556 + MPMX19_00219 0.58 +0.4
221,556 + MPMX19_00219 0.58 -0.5
221,556 + MPMX19_00219 0.58 -1.4
221,556 + MPMX19_00219 0.58 -2.5
221,556 + MPMX19_00219 0.58 -0.8
221,556 + MPMX19_00219 0.58 -0.5
221,556 + MPMX19_00219 0.58 -1.8
221,556 + MPMX19_00219 0.58 +0.7
221,557 - MPMX19_00219 0.58 -0.1
221,557 - MPMX19_00219 0.58 +0.4
221,557 - MPMX19_00219 0.58 +0.7
221,557 - MPMX19_00219 0.58 -0.8
221,557 - MPMX19_00219 0.58 -0.4
221,557 - MPMX19_00219 0.58 -1.0
221,557 - MPMX19_00219 0.58 -0.6
221,557 - MPMX19_00219 0.58 -1.0
221,557 - MPMX19_00219 0.58 +0.0
221,557 - MPMX19_00219 0.58 -0.5
221,557 - MPMX19_00219 0.58 +0.1
221,557 - MPMX19_00219 0.58 -2.8
221,557 - MPMX19_00219 0.58 +0.1
221,557 - MPMX19_00219 0.58 +1.8
221,557 - MPMX19_00219 0.58 +0.0
221,557 - MPMX19_00219 0.58 +1.0
221,557 - MPMX19_00219 0.58 -0.4
221,557 - MPMX19_00219 0.58 -0.6
221,565 + MPMX19_00219 0.59 -1.2
221,565 + MPMX19_00219 0.59 +0.0
221,565 + MPMX19_00219 0.59 -1.4
221,565 + MPMX19_00219 0.59 -0.1
221,565 + MPMX19_00219 0.59 -0.7
221,565 + MPMX19_00219 0.59 +0.3
221,566 - MPMX19_00219 0.59 -0.2
221,566 - MPMX19_00219 0.59 +0.8
221,566 - MPMX19_00219 0.59 -0.1
221,566 - MPMX19_00219 0.59 +0.7
221,566 - MPMX19_00219 0.59 +0.7
221,566 - MPMX19_00219 0.59 -0.4
221,658 + MPMX19_00219 0.69 -0.6
221,658 + MPMX19_00219 0.69 +0.8
221,658 + MPMX19_00219 0.69 -0.7
221,658 + MPMX19_00219 0.69 +0.2
221,658 + MPMX19_00219 0.69 -0.4
221,658 + MPMX19_00219 0.69 -0.8
221,658 + MPMX19_00219 0.69 -0.7
221,658 + MPMX19_00219 0.69 +0.8
221,658 + MPMX19_00219 0.69 +1.7
221,658 + MPMX19_00219 0.69 -1.2
221,658 + MPMX19_00219 0.69 +0.4
221,658 + MPMX19_00219 0.69 +0.4
221,658 + MPMX19_00219 0.69 -0.6
221,658 + MPMX19_00219 0.69 +0.8
221,658 + MPMX19_00219 0.69 -1.3
221,658 + MPMX19_00219 0.69 +0.0
221,658 + MPMX19_00219 0.69 -0.8
221,658 + MPMX19_00219 0.69 +2.3
221,658 + MPMX19_00219 0.69 -0.6
221,658 + MPMX19_00219 0.69 -0.6
221,658 + MPMX19_00219 0.69 -0.7
221,658 + MPMX19_00219 0.69 -1.3
221,658 + MPMX19_00219 0.69 +1.6
221,658 + MPMX19_00219 0.69 -0.6
221,658 + MPMX19_00219 0.69 +0.5
221,659 + MPMX19_00219 0.69 -0.5
221,659 - MPMX19_00219 0.69 -1.6
221,659 - MPMX19_00219 0.69 -0.6
221,659 - MPMX19_00219 0.69 +0.7
221,659 - MPMX19_00219 0.69 -0.0
221,659 - MPMX19_00219 0.69 -1.8
221,659 - MPMX19_00219 0.69 -0.6
221,659 - MPMX19_00219 0.69 -0.6
221,659 - MPMX19_00219 0.69 -1.3
221,659 - MPMX19_00219 0.69 -1.1
221,659 - MPMX19_00219 0.69 +1.4
221,659 - MPMX19_00219 0.69 +0.2
221,659 - MPMX19_00219 0.69 +0.2
221,659 - MPMX19_00219 0.69 -0.8
221,659 - MPMX19_00219 0.69 -1.9
221,724 + MPMX19_00219 0.76 -0.3
221,724 + MPMX19_00219 0.76 -1.3
221,725 - MPMX19_00219 0.76 +0.0
221,725 - MPMX19_00219 0.76 +0.3
221,725 - MPMX19_00219 0.76 +0.0
221,725 - MPMX19_00219 0.76 -0.7
221,754 + MPMX19_00219 0.79 -0.6
221,754 + MPMX19_00219 0.79 +0.4
221,754 + MPMX19_00219 0.79 +0.3
221,754 + MPMX19_00219 0.79 -0.6
221,754 + MPMX19_00219 0.79 -0.6
221,755 - MPMX19_00219 0.80 -2.5
221,755 - MPMX19_00219 0.80 -0.1
221,755 - MPMX19_00219 0.80 -0.7
221,755 - MPMX19_00219 0.80 +0.1
221,755 - MPMX19_00219 0.80 +0.1
221,755 - MPMX19_00219 0.80 +1.0
221,755 - MPMX19_00219 0.80 -1.4
221,755 - MPMX19_00219 0.80 -0.4
221,755 - MPMX19_00219 0.80 -0.9
221,755 - MPMX19_00219 0.80 -1.4
221,877 + -1.0
221,877 + -0.3
221,877 + -2.0
221,877 + -1.9
221,877 + -0.2
221,877 + -1.4
221,877 + +0.1
221,877 + -1.7
221,878 - -1.0
221,878 - -0.4
221,878 - +1.2
221,878 - +0.6
221,878 - -0.9
221,900 - +0.7
221,983 + -0.6
221,983 + -0.8
221,983 + -0.1
221,983 + -0.9
221,983 + +0.7
221,983 + +0.3
221,983 + +0.8
221,983 + +0.1
221,983 + +0.0
221,984 - +1.3
221,984 - -0.3
221,984 - -0.2
221,984 - +1.0
221,984 - -0.5
221,984 - -1.2
221,984 - +0.8
221,984 - -0.8
221,984 - +0.1
221,999 + +0.2
222,000 - -0.8
222,057 + +1.0
222,088 + -0.6
222,088 + -0.3
222,088 + -0.1
222,089 - +1.0
222,118 + -1.4
222,118 + +1.0
222,119 - -0.7
222,202 + -0.4
222,202 + -0.6
222,203 - +0.3
222,203 - -1.9
222,203 - +1.3
222,203 - -1.3
222,203 - -1.5
222,203 - -0.9
222,205 + +0.9
222,222 + +0.4
222,222 + +1.6
222,222 + +2.0
222,223 - +0.9
222,223 - -1.3
222,275 - -0.7

Or see this region's nucleotide sequence