Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_00217

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_00215 and MPMX19_00216 are separated by 444 nucleotidesMPMX19_00216 and MPMX19_00217 are separated by 49 nucleotidesMPMX19_00217 and MPMX19_00218 are separated by 241 nucleotidesMPMX19_00218 and MPMX19_00219 are separated by 17 nucleotides MPMX19_00215: MPMX19_00215 - hypothetical protein, at 217,736 to 217,972 _00215 MPMX19_00216: MPMX19_00216 - 10 kDa chaperonin 1, at 218,417 to 218,707 _00216 MPMX19_00217: MPMX19_00217 - 60 kDa chaperonin 5, at 218,757 to 220,400 _00217 MPMX19_00218: MPMX19_00218 - hypothetical protein, at 220,642 to 221,007 _00218 MPMX19_00219: MPMX19_00219 - hypothetical protein, at 221,025 to 221,942 _00219 Position (kb) 218 219 220 221Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 217.911 kb on + strand, within MPMX19_00215at 217.911 kb on + strand, within MPMX19_00215at 217.911 kb on + strand, within MPMX19_00215at 217.911 kb on + strand, within MPMX19_00215at 217.911 kb on + strand, within MPMX19_00215at 217.911 kb on + strand, within MPMX19_00215at 217.911 kb on + strand, within MPMX19_00215at 217.911 kb on + strand, within MPMX19_00215at 217.911 kb on + strand, within MPMX19_00215at 217.911 kb on + strand, within MPMX19_00215at 217.911 kb on + strand, within MPMX19_00215at 217.911 kb on + strand, within MPMX19_00215at 217.911 kb on + strand, within MPMX19_00215at 217.911 kb on + strand, within MPMX19_00215at 217.911 kb on + strand, within MPMX19_00215at 217.911 kb on + strand, within MPMX19_00215at 217.911 kb on + strand, within MPMX19_00215at 217.912 kb on - strand, within MPMX19_00215at 217.912 kb on - strand, within MPMX19_00215at 217.912 kb on - strand, within MPMX19_00215at 217.912 kb on - strand, within MPMX19_00215at 217.912 kb on - strand, within MPMX19_00215at 217.912 kb on - strand, within MPMX19_00215at 217.912 kb on - strand, within MPMX19_00215at 217.912 kb on - strand, within MPMX19_00215at 217.912 kb on - strand, within MPMX19_00215at 217.912 kb on - strand, within MPMX19_00215at 217.912 kb on - strand, within MPMX19_00215at 217.912 kb on - strand, within MPMX19_00215at 217.912 kb on - strand, within MPMX19_00215at 217.912 kb on - strand, within MPMX19_00215at 217.912 kb on - strand, within MPMX19_00215at 217.912 kb on - strand, within MPMX19_00215at 217.912 kb on - strand, within MPMX19_00215at 217.912 kb on - strand, within MPMX19_00215at 217.912 kb on - strand, within MPMX19_00215at 218.121 kb on + strandat 218.121 kb on + strandat 218.121 kb on + strandat 218.121 kb on + strandat 218.122 kb on - strandat 218.122 kb on - strandat 218.122 kb on - strandat 218.122 kb on - strandat 218.122 kb on - strandat 218.122 kb on - strandat 218.122 kb on - strandat 218.122 kb on - strandat 218.231 kb on - strandat 218.244 kb on + strandat 218.325 kb on + strandat 218.325 kb on + strandat 218.325 kb on + strandat 218.325 kb on + strandat 218.356 kb on + strandat 220.561 kb on + strandat 220.561 kb on + strandat 220.562 kb on - strandat 220.617 kb on + strandat 220.618 kb on - strandat 220.618 kb on - strandat 221.301 kb on + strand, within MPMX19_00219at 221.301 kb on + strand, within MPMX19_00219at 221.301 kb on + strand, within MPMX19_00219at 221.301 kb on + strand, within MPMX19_00219at 221.301 kb on + strand, within MPMX19_00219at 221.301 kb on + strand, within MPMX19_00219at 221.301 kb on + strand, within MPMX19_00219at 221.301 kb on + strand, within MPMX19_00219at 221.301 kb on + strand, within MPMX19_00219at 221.301 kb on + strand, within MPMX19_00219at 221.301 kb on + strand, within MPMX19_00219at 221.301 kb on + strand, within MPMX19_00219at 221.301 kb on + strand, within MPMX19_00219at 221.301 kb on + strand, within MPMX19_00219at 221.301 kb on + strand, within MPMX19_00219at 221.301 kb on + strand, within MPMX19_00219at 221.301 kb on + strand, within MPMX19_00219at 221.301 kb on + strand, within MPMX19_00219at 221.301 kb on + strand, within MPMX19_00219at 221.301 kb on + strand, within MPMX19_00219at 221.301 kb on + strand, within MPMX19_00219at 221.301 kb on + strand, within MPMX19_00219at 221.301 kb on + strand, within MPMX19_00219at 221.301 kb on + strand, within MPMX19_00219at 221.301 kb on + strand, within MPMX19_00219at 221.302 kb on - strand, within MPMX19_00219at 221.302 kb on - strand, within MPMX19_00219at 221.302 kb on - strand, within MPMX19_00219at 221.302 kb on - strand, within MPMX19_00219at 221.302 kb on - strand, within MPMX19_00219at 221.302 kb on - strand, within MPMX19_00219at 221.302 kb on - strand, within MPMX19_00219at 221.302 kb on - strand, within MPMX19_00219at 221.302 kb on - strand, within MPMX19_00219at 221.302 kb on - strand, within MPMX19_00219at 221.302 kb on - strand, within MPMX19_00219at 221.302 kb on - strand, within MPMX19_00219at 221.302 kb on - strand, within MPMX19_00219at 221.302 kb on - strand, within MPMX19_00219at 221.302 kb on - strand, within MPMX19_00219at 221.302 kb on - strand, within MPMX19_00219at 221.302 kb on - strand, within MPMX19_00219at 221.302 kb on - strand, within MPMX19_00219at 221.302 kb on - strand, within MPMX19_00219at 221.316 kb on + strand, within MPMX19_00219at 221.316 kb on + strand, within MPMX19_00219at 221.316 kb on + strand, within MPMX19_00219at 221.316 kb on + strand, within MPMX19_00219at 221.316 kb on + strand, within MPMX19_00219at 221.316 kb on + strand, within MPMX19_00219at 221.316 kb on + strand, within MPMX19_00219at 221.317 kb on - strand, within MPMX19_00219at 221.317 kb on - strand, within MPMX19_00219at 221.317 kb on - strand, within MPMX19_00219at 221.317 kb on - strand, within MPMX19_00219at 221.317 kb on - strand, within MPMX19_00219at 221.317 kb on - strand, within MPMX19_00219at 221.317 kb on - strand, within MPMX19_00219at 221.317 kb on - strand, within MPMX19_00219

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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217,911 + MPMX19_00215 0.74 +0.3
217,911 + MPMX19_00215 0.74 -1.8
217,911 + MPMX19_00215 0.74 +0.1
217,911 + MPMX19_00215 0.74 -0.7
217,911 + MPMX19_00215 0.74 +0.3
217,911 + MPMX19_00215 0.74 -0.1
217,911 + MPMX19_00215 0.74 -0.3
217,911 + MPMX19_00215 0.74 -0.1
217,911 + MPMX19_00215 0.74 +0.4
217,911 + MPMX19_00215 0.74 +0.5
217,911 + MPMX19_00215 0.74 -0.9
217,911 + MPMX19_00215 0.74 -1.7
217,911 + MPMX19_00215 0.74 -2.1
217,911 + MPMX19_00215 0.74 +0.8
217,911 + MPMX19_00215 0.74 -1.6
217,911 + MPMX19_00215 0.74 -0.3
217,911 + MPMX19_00215 0.74 -0.2
217,912 - MPMX19_00215 0.74 -0.7
217,912 - MPMX19_00215 0.74 +1.0
217,912 - MPMX19_00215 0.74 -0.8
217,912 - MPMX19_00215 0.74 +0.2
217,912 - MPMX19_00215 0.74 +1.0
217,912 - MPMX19_00215 0.74 -1.1
217,912 - MPMX19_00215 0.74 -0.1
217,912 - MPMX19_00215 0.74 +1.0
217,912 - MPMX19_00215 0.74 -0.6
217,912 - MPMX19_00215 0.74 -1.1
217,912 - MPMX19_00215 0.74 -0.3
217,912 - MPMX19_00215 0.74 -0.3
217,912 - MPMX19_00215 0.74 +0.4
217,912 - MPMX19_00215 0.74 -0.2
217,912 - MPMX19_00215 0.74 -2.5
217,912 - MPMX19_00215 0.74 -1.8
217,912 - MPMX19_00215 0.74 -1.8
217,912 - MPMX19_00215 0.74 -0.5
217,912 - MPMX19_00215 0.74 -0.8
218,121 + +1.0
218,121 + +0.3
218,121 + -0.4
218,121 + +1.0
218,122 - -1.0
218,122 - +0.0
218,122 - -0.5
218,122 - +0.3
218,122 - -1.4
218,122 - -0.8
218,122 - +0.6
218,122 - +0.6
218,231 - -1.1
218,244 + -0.8
218,325 + +0.6
218,325 + +0.4
218,325 + -2.1
218,325 + +0.4
218,356 + +0.6
220,561 + -0.9
220,561 + +0.5
220,562 - -0.6
220,617 + +0.8
220,618 - -0.6
220,618 - +0.0
221,301 + MPMX19_00219 0.30 +0.3
221,301 + MPMX19_00219 0.30 -1.4
221,301 + MPMX19_00219 0.30 -0.9
221,301 + MPMX19_00219 0.30 -0.6
221,301 + MPMX19_00219 0.30 -1.1
221,301 + MPMX19_00219 0.30 -0.4
221,301 + MPMX19_00219 0.30 -0.8
221,301 + MPMX19_00219 0.30 -0.4
221,301 + MPMX19_00219 0.30 -1.4
221,301 + MPMX19_00219 0.30 -2.0
221,301 + MPMX19_00219 0.30 -1.1
221,301 + MPMX19_00219 0.30 -0.8
221,301 + MPMX19_00219 0.30 -1.0
221,301 + MPMX19_00219 0.30 +0.2
221,301 + MPMX19_00219 0.30 -0.1
221,301 + MPMX19_00219 0.30 -1.1
221,301 + MPMX19_00219 0.30 +0.0
221,301 + MPMX19_00219 0.30 +0.0
221,301 + MPMX19_00219 0.30 -0.3
221,301 + MPMX19_00219 0.30 +1.0
221,301 + MPMX19_00219 0.30 -0.5
221,301 + MPMX19_00219 0.30 -2.2
221,301 + MPMX19_00219 0.30 +0.2
221,301 + MPMX19_00219 0.30 +0.6
221,301 + MPMX19_00219 0.30 -0.1
221,302 - MPMX19_00219 0.30 -2.4
221,302 - MPMX19_00219 0.30 +0.2
221,302 - MPMX19_00219 0.30 +1.2
221,302 - MPMX19_00219 0.30 +0.1
221,302 - MPMX19_00219 0.30 +2.0
221,302 - MPMX19_00219 0.30 +0.4
221,302 - MPMX19_00219 0.30 +0.1
221,302 - MPMX19_00219 0.30 +0.4
221,302 - MPMX19_00219 0.30 +0.4
221,302 - MPMX19_00219 0.30 -0.6
221,302 - MPMX19_00219 0.30 +0.8
221,302 - MPMX19_00219 0.30 -0.0
221,302 - MPMX19_00219 0.30 +1.0
221,302 - MPMX19_00219 0.30 +0.4
221,302 - MPMX19_00219 0.30 -0.6
221,302 - MPMX19_00219 0.30 -1.6
221,302 - MPMX19_00219 0.30 -1.6
221,302 - MPMX19_00219 0.30 -0.4
221,302 - MPMX19_00219 0.30 +0.0
221,316 + MPMX19_00219 0.32 -2.8
221,316 + MPMX19_00219 0.32 -0.8
221,316 + MPMX19_00219 0.32 +1.2
221,316 + MPMX19_00219 0.32 +1.8
221,316 + MPMX19_00219 0.32 -0.5
221,316 + MPMX19_00219 0.32 +1.4
221,316 + MPMX19_00219 0.32 -0.2
221,317 - MPMX19_00219 0.32 -0.8
221,317 - MPMX19_00219 0.32 -1.1
221,317 - MPMX19_00219 0.32 -0.9
221,317 - MPMX19_00219 0.32 -1.0
221,317 - MPMX19_00219 0.32 +0.0
221,317 - MPMX19_00219 0.32 -0.1
221,317 - MPMX19_00219 0.32 -1.1
221,317 - MPMX19_00219 0.32 -0.7

Or see this region's nucleotide sequence