Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_00147

Experiment: NF

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_00145 and MPMX19_00146 overlap by 4 nucleotidesMPMX19_00146 and MPMX19_00147 are separated by 68 nucleotidesMPMX19_00147 and MPMX19_00148 are separated by 89 nucleotidesMPMX19_00148 and MPMX19_00149 overlap by 17 nucleotides MPMX19_00145: MPMX19_00145 - DNA adenine methyltransferase YhdJ, at 156,832 to 157,623 _00145 MPMX19_00146: MPMX19_00146 - hypothetical protein, at 157,620 to 157,883 _00146 MPMX19_00147: MPMX19_00147 - hypothetical protein, at 157,952 to 158,698 _00147 MPMX19_00148: MPMX19_00148 - hypothetical protein, at 158,788 to 159,306 _00148 MPMX19_00149: MPMX19_00149 - hypothetical protein, at 159,290 to 159,763 _00149 Position (kb) 157 158 159Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 156.985 kb on + strand, within MPMX19_00145at 156.986 kb on - strand, within MPMX19_00145at 157.276 kb on + strand, within MPMX19_00145at 157.276 kb on + strand, within MPMX19_00145at 157.276 kb on + strand, within MPMX19_00145at 157.276 kb on + strand, within MPMX19_00145at 157.276 kb on + strand, within MPMX19_00145at 157.276 kb on + strand, within MPMX19_00145at 157.276 kb on + strand, within MPMX19_00145at 157.276 kb on + strand, within MPMX19_00145at 157.276 kb on + strand, within MPMX19_00145at 157.276 kb on + strand, within MPMX19_00145at 157.276 kb on + strand, within MPMX19_00145at 157.276 kb on + strand, within MPMX19_00145at 157.276 kb on + strand, within MPMX19_00145at 157.276 kb on + strand, within MPMX19_00145at 157.277 kb on - strand, within MPMX19_00145at 157.277 kb on - strand, within MPMX19_00145at 157.277 kb on - strand, within MPMX19_00145at 157.277 kb on - strand, within MPMX19_00145at 157.277 kb on - strand, within MPMX19_00145at 157.277 kb on - strand, within MPMX19_00145at 157.277 kb on - strand, within MPMX19_00145at 157.277 kb on - strand, within MPMX19_00145at 157.277 kb on - strand, within MPMX19_00145at 157.277 kb on - strand, within MPMX19_00145at 157.277 kb on - strand, within MPMX19_00145at 157.277 kb on - strand, within MPMX19_00145at 157.277 kb on - strand, within MPMX19_00145at 157.277 kb on - strand, within MPMX19_00145at 157.277 kb on - strand, within MPMX19_00145at 157.567 kb on + strandat 157.568 kb on - strandat 157.881 kb on + strandat 157.881 kb on + strandat 157.882 kb on - strandat 157.990 kb on - strandat 158.009 kb on + strandat 158.009 kb on + strandat 158.010 kb on - strandat 158.010 kb on - strandat 158.010 kb on - strandat 158.030 kb on + strand, within MPMX19_00147at 158.123 kb on + strand, within MPMX19_00147at 158.124 kb on - strand, within MPMX19_00147at 158.124 kb on - strand, within MPMX19_00147at 158.124 kb on - strand, within MPMX19_00147at 158.124 kb on - strand, within MPMX19_00147at 158.225 kb on + strand, within MPMX19_00147at 158.226 kb on - strand, within MPMX19_00147at 158.226 kb on - strand, within MPMX19_00147at 158.226 kb on - strand, within MPMX19_00147at 158.352 kb on - strand, within MPMX19_00147at 158.420 kb on + strand, within MPMX19_00147at 158.420 kb on + strand, within MPMX19_00147at 158.420 kb on + strand, within MPMX19_00147at 158.421 kb on - strand, within MPMX19_00147at 158.421 kb on - strand, within MPMX19_00147at 158.421 kb on - strand, within MPMX19_00147at 158.478 kb on - strand, within MPMX19_00147at 158.478 kb on - strand, within MPMX19_00147at 158.478 kb on - strand, within MPMX19_00147at 158.478 kb on - strand, within MPMX19_00147at 158.478 kb on - strand, within MPMX19_00147at 158.478 kb on - strand, within MPMX19_00147at 158.526 kb on - strand, within MPMX19_00147at 158.526 kb on - strand, within MPMX19_00147at 158.526 kb on - strand, within MPMX19_00147at 158.526 kb on - strand, within MPMX19_00147at 158.526 kb on - strand, within MPMX19_00147at 158.526 kb on - strand, within MPMX19_00147at 158.526 kb on - strand, within MPMX19_00147at 158.526 kb on - strand, within MPMX19_00147at 158.526 kb on - strand, within MPMX19_00147at 158.526 kb on - strand, within MPMX19_00147at 158.526 kb on - strand, within MPMX19_00147at 158.526 kb on - strand, within MPMX19_00147at 158.526 kb on - strand, within MPMX19_00147at 158.526 kb on - strand, within MPMX19_00147at 158.526 kb on - strand, within MPMX19_00147at 158.582 kb on + strand, within MPMX19_00147at 158.583 kb on - strand, within MPMX19_00147at 158.583 kb on - strand, within MPMX19_00147at 158.583 kb on - strand, within MPMX19_00147at 158.731 kb on + strandat 158.731 kb on + strandat 158.732 kb on - strandat 158.732 kb on - strandat 158.732 kb on - strandat 158.732 kb on - strandat 158.787 kb on + strandat 158.787 kb on + strandat 158.787 kb on + strandat 158.787 kb on + strandat 158.787 kb on + strandat 158.788 kb on - strandat 158.788 kb on - strandat 158.788 kb on - strandat 158.788 kb on - strandat 158.788 kb on - strandat 158.788 kb on - strandat 158.788 kb on - strandat 158.986 kb on + strand, within MPMX19_00148at 158.987 kb on - strand, within MPMX19_00148at 158.987 kb on - strand, within MPMX19_00148at 158.987 kb on - strand, within MPMX19_00148at 159.344 kb on + strand, within MPMX19_00149at 159.497 kb on + strand, within MPMX19_00149at 159.497 kb on + strand, within MPMX19_00149at 159.497 kb on + strand, within MPMX19_00149at 159.498 kb on - strand, within MPMX19_00149at 159.498 kb on - strand, within MPMX19_00149at 159.498 kb on - strand, within MPMX19_00149at 159.498 kb on - strand, within MPMX19_00149at 159.498 kb on - strand, within MPMX19_00149at 159.498 kb on - strand, within MPMX19_00149at 159.498 kb on - strand, within MPMX19_00149at 159.503 kb on + strand, within MPMX19_00149at 159.503 kb on + strand, within MPMX19_00149at 159.503 kb on + strand, within MPMX19_00149at 159.582 kb on - strand, within MPMX19_00149at 159.582 kb on - strand, within MPMX19_00149at 159.611 kb on + strand, within MPMX19_00149at 159.611 kb on + strand, within MPMX19_00149at 159.612 kb on - strand, within MPMX19_00149at 159.612 kb on - strand, within MPMX19_00149at 159.612 kb on - strand, within MPMX19_00149

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NF
remove
156,985 + MPMX19_00145 0.19 -0.3
156,986 - MPMX19_00145 0.19 +0.7
157,276 + MPMX19_00145 0.56 -0.4
157,276 + MPMX19_00145 0.56 -1.8
157,276 + MPMX19_00145 0.56 -1.2
157,276 + MPMX19_00145 0.56 -1.7
157,276 + MPMX19_00145 0.56 +0.0
157,276 + MPMX19_00145 0.56 -0.4
157,276 + MPMX19_00145 0.56 -1.5
157,276 + MPMX19_00145 0.56 -0.4
157,276 + MPMX19_00145 0.56 +0.2
157,276 + MPMX19_00145 0.56 -0.4
157,276 + MPMX19_00145 0.56 -1.6
157,276 + MPMX19_00145 0.56 -0.5
157,276 + MPMX19_00145 0.56 -1.6
157,276 + MPMX19_00145 0.56 -0.3
157,277 - MPMX19_00145 0.56 -1.6
157,277 - MPMX19_00145 0.56 -1.4
157,277 - MPMX19_00145 0.56 +0.7
157,277 - MPMX19_00145 0.56 +0.2
157,277 - MPMX19_00145 0.56 -1.0
157,277 - MPMX19_00145 0.56 +0.4
157,277 - MPMX19_00145 0.56 +0.4
157,277 - MPMX19_00145 0.56 -1.0
157,277 - MPMX19_00145 0.56 +0.4
157,277 - MPMX19_00145 0.56 +0.4
157,277 - MPMX19_00145 0.56 -2.0
157,277 - MPMX19_00145 0.56 -0.6
157,277 - MPMX19_00145 0.56 -1.0
157,277 - MPMX19_00145 0.56 -1.8
157,277 - MPMX19_00145 0.56 +0.2
157,567 + -1.7
157,568 - +0.0
157,881 + +0.1
157,881 + -0.1
157,882 - +0.4
157,990 - -0.7
158,009 + +0.5
158,009 + +1.7
158,010 - -3.8
158,010 - -1.2
158,010 - -1.1
158,030 + MPMX19_00147 0.10 +0.7
158,123 + MPMX19_00147 0.23 -0.7
158,124 - MPMX19_00147 0.23 -1.1
158,124 - MPMX19_00147 0.23 -0.6
158,124 - MPMX19_00147 0.23 -0.6
158,124 - MPMX19_00147 0.23 -1.1
158,225 + MPMX19_00147 0.37 -1.3
158,226 - MPMX19_00147 0.37 -1.9
158,226 - MPMX19_00147 0.37 -0.5
158,226 - MPMX19_00147 0.37 -0.4
158,352 - MPMX19_00147 0.54 -0.8
158,420 + MPMX19_00147 0.63 +0.5
158,420 + MPMX19_00147 0.63 +1.0
158,420 + MPMX19_00147 0.63 -1.1
158,421 - MPMX19_00147 0.63 -0.8
158,421 - MPMX19_00147 0.63 -0.1
158,421 - MPMX19_00147 0.63 -1.3
158,478 - MPMX19_00147 0.70 +0.7
158,478 - MPMX19_00147 0.70 -1.0
158,478 - MPMX19_00147 0.70 +0.6
158,478 - MPMX19_00147 0.70 -1.3
158,478 - MPMX19_00147 0.70 -1.1
158,478 - MPMX19_00147 0.70 +3.0
158,526 - MPMX19_00147 0.77 -0.6
158,526 - MPMX19_00147 0.77 -1.2
158,526 - MPMX19_00147 0.77 -2.4
158,526 - MPMX19_00147 0.77 -1.4
158,526 - MPMX19_00147 0.77 -0.7
158,526 - MPMX19_00147 0.77 +0.0
158,526 - MPMX19_00147 0.77 -1.9
158,526 - MPMX19_00147 0.77 +0.4
158,526 - MPMX19_00147 0.77 -0.7
158,526 - MPMX19_00147 0.77 -0.4
158,526 - MPMX19_00147 0.77 +0.2
158,526 - MPMX19_00147 0.77 -0.2
158,526 - MPMX19_00147 0.77 -0.6
158,526 - MPMX19_00147 0.77 -0.6
158,526 - MPMX19_00147 0.77 -0.1
158,582 + MPMX19_00147 0.84 -1.1
158,583 - MPMX19_00147 0.84 +0.8
158,583 - MPMX19_00147 0.84 -1.0
158,583 - MPMX19_00147 0.84 -0.1
158,731 + -0.5
158,731 + +1.0
158,732 - -1.2
158,732 - -0.0
158,732 - +1.0
158,732 - -0.1
158,787 + +0.0
158,787 + -1.8
158,787 + -0.1
158,787 + -0.6
158,787 + -0.7
158,788 - +0.6
158,788 - -0.8
158,788 - +2.0
158,788 - -2.1
158,788 - -1.6
158,788 - -1.1
158,788 - -0.8
158,986 + MPMX19_00148 0.38 -0.8
158,987 - MPMX19_00148 0.38 -1.3
158,987 - MPMX19_00148 0.38 +0.7
158,987 - MPMX19_00148 0.38 -1.9
159,344 + MPMX19_00149 0.11 -0.9
159,497 + MPMX19_00149 0.44 +0.6
159,497 + MPMX19_00149 0.44 -0.9
159,497 + MPMX19_00149 0.44 +0.8
159,498 - MPMX19_00149 0.44 +1.4
159,498 - MPMX19_00149 0.44 -0.6
159,498 - MPMX19_00149 0.44 +0.1
159,498 - MPMX19_00149 0.44 -0.6
159,498 - MPMX19_00149 0.44 +0.7
159,498 - MPMX19_00149 0.44 -1.3
159,498 - MPMX19_00149 0.44 -1.7
159,503 + MPMX19_00149 0.45 -1.3
159,503 + MPMX19_00149 0.45 -0.6
159,503 + MPMX19_00149 0.45 -1.8
159,582 - MPMX19_00149 0.62 -1.0
159,582 - MPMX19_00149 0.62 -0.3
159,611 + MPMX19_00149 0.68 -0.8
159,611 + MPMX19_00149 0.68 -1.2
159,612 - MPMX19_00149 0.68 -0.8
159,612 - MPMX19_00149 0.68 -2.8
159,612 - MPMX19_00149 0.68 +0.0

Or see this region's nucleotide sequence