Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00109 and MPMX19_00110 are separated by 161 nucleotides MPMX19_00110 and MPMX19_00111 are separated by 515 nucleotides
MPMX19_00109: MPMX19_00109 - hypothetical protein, at 118,210 to 119,457
_00109
MPMX19_00110: MPMX19_00110 - hypothetical protein, at 119,619 to 120,527
_00110
MPMX19_00111: MPMX19_00111 - Lysine--tRNA ligase, at 121,043 to 122,611
_00111
Position (kb)
119
120
121 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 119.360 kb on + strand at 119.360 kb on + strand at 119.360 kb on + strand at 119.360 kb on + strand at 119.360 kb on + strand at 119.360 kb on + strand at 119.360 kb on + strand at 119.360 kb on + strand at 119.360 kb on + strand at 119.360 kb on + strand at 119.361 kb on - strand at 119.361 kb on - strand at 119.361 kb on - strand at 119.361 kb on - strand at 119.361 kb on - strand at 119.361 kb on - strand at 119.361 kb on - strand at 119.361 kb on - strand at 119.361 kb on - strand at 119.554 kb on + strand at 119.554 kb on + strand at 119.554 kb on + strand at 119.554 kb on + strand at 119.554 kb on + strand at 119.785 kb on + strand, within MPMX19_00110 at 119.785 kb on + strand, within MPMX19_00110 at 119.785 kb on + strand, within MPMX19_00110 at 119.785 kb on + strand, within MPMX19_00110 at 119.786 kb on - strand, within MPMX19_00110 at 119.786 kb on - strand, within MPMX19_00110 at 119.786 kb on - strand, within MPMX19_00110 at 120.112 kb on + strand, within MPMX19_00110 at 120.112 kb on + strand, within MPMX19_00110 at 120.112 kb on + strand, within MPMX19_00110 at 120.112 kb on + strand, within MPMX19_00110 at 120.112 kb on + strand, within MPMX19_00110 at 120.112 kb on + strand, within MPMX19_00110 at 120.112 kb on + strand, within MPMX19_00110 at 120.112 kb on + strand, within MPMX19_00110 at 120.112 kb on + strand, within MPMX19_00110 at 120.112 kb on + strand, within MPMX19_00110 at 120.112 kb on + strand, within MPMX19_00110 at 120.112 kb on + strand, within MPMX19_00110 at 120.112 kb on + strand, within MPMX19_00110 at 120.112 kb on + strand, within MPMX19_00110 at 120.112 kb on + strand, within MPMX19_00110 at 120.112 kb on + strand, within MPMX19_00110 at 120.112 kb on + strand, within MPMX19_00110 at 120.113 kb on - strand, within MPMX19_00110 at 120.113 kb on - strand, within MPMX19_00110 at 120.113 kb on - strand, within MPMX19_00110 at 120.113 kb on - strand, within MPMX19_00110 at 120.113 kb on - strand, within MPMX19_00110 at 120.113 kb on - strand, within MPMX19_00110 at 120.113 kb on - strand, within MPMX19_00110 at 120.113 kb on - strand, within MPMX19_00110 at 120.113 kb on - strand, within MPMX19_00110 at 120.113 kb on - strand, within MPMX19_00110 at 120.113 kb on - strand, within MPMX19_00110 at 120.113 kb on - strand, within MPMX19_00110 at 120.113 kb on - strand, within MPMX19_00110 at 120.113 kb on - strand, within MPMX19_00110 at 120.113 kb on - strand, within MPMX19_00110 at 120.113 kb on - strand, within MPMX19_00110 at 120.113 kb on - strand, within MPMX19_00110 at 120.113 kb on - strand, within MPMX19_00110 at 120.597 kb on + strand at 120.609 kb on + strand at 120.609 kb on + strand at 120.613 kb on + strand at 120.734 kb on + strand at 120.734 kb on + strand at 120.735 kb on - strand at 120.735 kb on - strand at 120.735 kb on - strand at 120.739 kb on + strand at 120.739 kb on + strand at 120.740 kb on - strand at 120.740 kb on - strand at 120.740 kb on - strand at 120.767 kb on + strand at 120.782 kb on + strand at 120.783 kb on - strand at 120.805 kb on + strand at 120.843 kb on + strand at 120.855 kb on + strand at 120.858 kb on + strand at 120.858 kb on + strand at 120.858 kb on + strand at 120.859 kb on - strand at 120.859 kb on - strand at 120.881 kb on + strand at 120.881 kb on + strand at 120.882 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 119,360 + -0.6 119,360 + -0.6 119,360 + +0.5 119,360 + -1.3 119,360 + -1.0 119,360 + -0.6 119,360 + +0.2 119,360 + +0.2 119,360 + -0.5 119,360 + +1.5 119,361 - +0.1 119,361 - -1.5 119,361 - -2.0 119,361 - -0.9 119,361 - -0.4 119,361 - +0.7 119,361 - -1.8 119,361 - +2.4 119,361 - -0.4 119,554 + +1.0 119,554 + -0.8 119,554 + +1.8 119,554 + -1.6 119,554 + +0.2 119,785 + MPMX19_00110 0.18 -0.7 119,785 + MPMX19_00110 0.18 -1.3 119,785 + MPMX19_00110 0.18 +0.0 119,785 + MPMX19_00110 0.18 -0.1 119,786 - MPMX19_00110 0.18 -0.4 119,786 - MPMX19_00110 0.18 +0.2 119,786 - MPMX19_00110 0.18 -1.0 120,112 + MPMX19_00110 0.54 -0.8 120,112 + MPMX19_00110 0.54 -1.9 120,112 + MPMX19_00110 0.54 +0.2 120,112 + MPMX19_00110 0.54 -1.4 120,112 + MPMX19_00110 0.54 +0.2 120,112 + MPMX19_00110 0.54 -1.0 120,112 + MPMX19_00110 0.54 -1.0 120,112 + MPMX19_00110 0.54 -1.6 120,112 + MPMX19_00110 0.54 -1.0 120,112 + MPMX19_00110 0.54 -2.0 120,112 + MPMX19_00110 0.54 -0.6 120,112 + MPMX19_00110 0.54 +0.1 120,112 + MPMX19_00110 0.54 -1.8 120,112 + MPMX19_00110 0.54 -1.1 120,112 + MPMX19_00110 0.54 -0.5 120,112 + MPMX19_00110 0.54 -0.3 120,112 + MPMX19_00110 0.54 -0.3 120,113 - MPMX19_00110 0.54 -0.7 120,113 - MPMX19_00110 0.54 -0.4 120,113 - MPMX19_00110 0.54 -0.3 120,113 - MPMX19_00110 0.54 +0.2 120,113 - MPMX19_00110 0.54 -0.9 120,113 - MPMX19_00110 0.54 -2.1 120,113 - MPMX19_00110 0.54 +0.2 120,113 - MPMX19_00110 0.54 -0.0 120,113 - MPMX19_00110 0.54 -1.4 120,113 - MPMX19_00110 0.54 -0.1 120,113 - MPMX19_00110 0.54 -1.5 120,113 - MPMX19_00110 0.54 -1.1 120,113 - MPMX19_00110 0.54 -0.7 120,113 - MPMX19_00110 0.54 -1.3 120,113 - MPMX19_00110 0.54 -0.8 120,113 - MPMX19_00110 0.54 -0.3 120,113 - MPMX19_00110 0.54 -0.4 120,113 - MPMX19_00110 0.54 -1.4 120,597 + +0.9 120,609 + -2.1 120,609 + -1.8 120,613 + +0.0 120,734 + +0.9 120,734 + -1.4 120,735 - -1.0 120,735 - -1.8 120,735 - +1.3 120,739 + -0.1 120,739 + -1.3 120,740 - +0.0 120,740 - +0.8 120,740 - -0.6 120,767 + +0.4 120,782 + -0.6 120,783 - -0.2 120,805 + -0.5 120,843 + -0.5 120,855 + -1.2 120,858 + -0.8 120,858 + -1.1 120,858 + -1.4 120,859 - -1.4 120,859 - +0.4 120,881 + -1.7 120,881 + +0.0 120,882 - +0.7
Or see this region's nucleotide sequence