Strain Fitness in Azospirillum sp. SherDot2

Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_00003

Experiment: NF

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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Per-strain Table

Position	Strand	LocusTag	Fraction	NF
				remove
2,105	+	MPMX19_00002	0.44	+0.0
2,105	+	MPMX19_00002	0.44	-0.8
2,106	-	MPMX19_00002	0.44	-0.4
2,106	-	MPMX19_00002	0.44	-0.7
2,106	-	MPMX19_00002	0.44	-0.8
2,106	-	MPMX19_00002	0.44	+0.1
2,106	-	MPMX19_00002	0.44	-1.4
2,106	-	MPMX19_00002	0.44	-1.4
2,132	+	MPMX19_00002	0.47	+0.0
2,132	+	MPMX19_00002	0.47	-0.2
2,132	+	MPMX19_00002	0.47	-0.6
2,132	+	MPMX19_00002	0.47	+1.6
2,132	+	MPMX19_00002	0.47	+0.2
2,133	-	MPMX19_00002	0.47	-0.5
2,133	-	MPMX19_00002	0.47	-1.0
2,133	-	MPMX19_00002	0.47	+2.4
2,133	-	MPMX19_00002	0.47	+0.3
2,133	-	MPMX19_00002	0.47	+0.0
2,159	+	MPMX19_00002	0.50	-0.0
2,240	+	MPMX19_00002	0.59	+0.4
2,240	+	MPMX19_00002	0.59	+0.8
2,240	+	MPMX19_00002	0.59	+0.8
2,240	+	MPMX19_00002	0.59	+1.4
2,240	+	MPMX19_00002	0.59	+0.5
2,240	+	MPMX19_00002	0.59	+1.1
2,240	+	MPMX19_00002	0.59	-0.4
2,240	+	MPMX19_00002	0.59	-2.1
2,240	+	MPMX19_00002	0.59	-1.3
2,240	+	MPMX19_00002	0.59	+0.4
2,240	+	MPMX19_00002	0.59	-0.3
2,240	+	MPMX19_00002	0.59	-0.8
2,240	+	MPMX19_00002	0.59	+0.8
2,240	+	MPMX19_00002	0.59	+0.4
2,240	+	MPMX19_00002	0.59	+0.7
2,240	+	MPMX19_00002	0.59	+0.8
2,240	+	MPMX19_00002	0.59	-0.1
2,240	+	MPMX19_00002	0.59	-1.0
2,240	+	MPMX19_00002	0.59	-0.1
2,240	+	MPMX19_00002	0.59	-0.2
2,240	+	MPMX19_00002	0.59	-0.6
2,240	+	MPMX19_00002	0.59	+1.4
2,240	+	MPMX19_00002	0.59	+0.0
2,240	+	MPMX19_00002	0.59	+0.2
2,240	+	MPMX19_00002	0.59	+0.7
2,240	+	MPMX19_00002	0.59	-0.0
2,240	+	MPMX19_00002	0.59	+0.0
2,240	+	MPMX19_00002	0.59	-0.2
2,240	+	MPMX19_00002	0.59	-0.4
2,241	-	MPMX19_00002	0.59	-0.9
2,241	-	MPMX19_00002	0.59	+2.8
2,241	-	MPMX19_00002	0.59	-1.0
2,241	-	MPMX19_00002	0.59	+1.0
2,241	-	MPMX19_00002	0.59	-1.7
2,241	-	MPMX19_00002	0.59	+0.6
2,241	-	MPMX19_00002	0.59	+0.9
2,241	-	MPMX19_00002	0.59	+0.6
2,241	-	MPMX19_00002	0.59	+2.4
2,241	-	MPMX19_00002	0.59	+0.1
2,241	-	MPMX19_00002	0.59	-0.1
2,241	-	MPMX19_00002	0.59	-0.6
2,241	-	MPMX19_00002	0.59	-0.5
2,241	-	MPMX19_00002	0.59	+1.0
2,241	-	MPMX19_00002	0.59	-0.8
2,241	-	MPMX19_00002	0.59	+0.9
2,241	-	MPMX19_00002	0.59	-0.1
2,241	-	MPMX19_00002	0.59	-2.0
2,241	-	MPMX19_00002	0.59	-1.0
2,537	+			-1.4
2,537	+			+0.0
2,537	+			+0.1
2,537	+			-0.2
2,537	+			-0.3
2,537	+			+0.2
2,538	-			-0.8
2,538	-			-0.8
2,538	-			-0.4
2,538	-			-0.8
2,612	+			-0.5
2,612	+			-1.1
2,612	+			-1.4
2,612	+			-0.5
2,612	+			+0.3
2,612	+			-1.6
2,612	+			-0.8
2,612	+			+0.1
2,612	+			-0.3
2,612	+			-0.9
2,612	+			+0.8
2,612	+			+0.4
2,612	+			-0.1
2,612	+			-1.4
2,612	+			+1.7
2,612	+			+1.1
2,612	+			-0.5
2,612	+			+0.5
2,612	+			+0.6
2,612	+			+0.0
2,612	+			-0.6
2,612	+			-0.7
2,612	+			+0.1
2,612	+			-0.4
2,612	+			-0.6
2,613	-			+0.1
2,613	-			-2.0
2,613	-			-0.8
2,613	-			+0.4
2,613	-			-1.5
2,613	-			+0.9
2,613	-			-1.1
2,613	-			+0.1
2,613	-			-0.3
2,613	-			-1.7
2,613	-			-1.1
2,613	-			-1.2
2,613	-			-0.7
2,613	-			-0.4
2,613	-			+0.4
2,613	-			-0.9
2,613	-			+0.0
2,613	-			-0.8
2,613	-			-1.4
2,613	-			+0.0
2,613	-			+0.4
2,613	-			-1.6
2,613	-			+0.0
2,613	-			-0.6
2,613	-			+0.0
2,613	-			-0.6
2,613	-			-1.3
2,613	-			+0.0
2,613	-			-1.6
2,613	-			-2.1
2,670	+			-1.7
2,687	+			-0.4
2,687	+			-0.8
2,687	+			+0.4
2,687	+			+1.0
2,688	-			+0.0
2,688	-			-1.4
2,688	-			+0.7
2,688	-			-2.3
2,688	-			+0.2
2,688	-			+0.2
2,688	-			+1.0
2,688	-			-0.4
2,688	-			-1.0
2,734	+			-0.6
2,734	+			-1.8
2,734	+			+1.0
2,734	+			+0.3
2,735	-			+0.0
2,735	-			-0.2
2,735	-			+0.2
2,735	-			-0.1
2,735	-			-0.9
2,735	-			-0.8
2,735	-			+0.0
3,041	+	MPMX19_00003	0.17	-0.6
3,041	+	MPMX19_00003	0.17	+0.0
3,041	+	MPMX19_00003	0.17	-0.3
3,042	-	MPMX19_00003	0.18	+0.9
3,042	-	MPMX19_00003	0.18	+1.0
3,042	-	MPMX19_00003	0.18	-0.7
3,042	-	MPMX19_00003	0.18	-1.3
3,042	-	MPMX19_00003	0.18	+2.5
3,107	+	MPMX19_00003	0.23	+1.2
3,107	+	MPMX19_00003	0.23	-0.9
3,107	+	MPMX19_00003	0.23	-1.0
3,107	+	MPMX19_00003	0.23	+0.1
3,108	-	MPMX19_00003	0.23	+0.2
3,108	-	MPMX19_00003	0.23	-0.6
3,108	-	MPMX19_00003	0.23	+0.7
3,108	-	MPMX19_00003	0.23	+1.0
3,200	+	MPMX19_00003	0.31	-0.4
3,200	+	MPMX19_00003	0.31	-1.1
3,200	+	MPMX19_00003	0.31	-0.8
3,200	+	MPMX19_00003	0.31	-0.4
3,200	+	MPMX19_00003	0.31	-0.3
3,200	+	MPMX19_00003	0.31	+0.1
3,200	+	MPMX19_00003	0.31	+0.4
3,200	+	MPMX19_00003	0.31	-2.7
3,200	+	MPMX19_00003	0.31	-0.8
3,200	+	MPMX19_00003	0.31	-1.8
3,200	+	MPMX19_00003	0.31	-0.0
3,200	+	MPMX19_00003	0.31	+0.2
3,200	+	MPMX19_00003	0.31	+0.5
3,200	+	MPMX19_00003	0.31	-0.6
3,201	-	MPMX19_00003	0.31	-0.2
3,201	-	MPMX19_00003	0.31	-0.1
3,201	-	MPMX19_00003	0.31	-0.9
3,201	-	MPMX19_00003	0.31	+0.8
3,201	-	MPMX19_00003	0.31	+0.7
3,201	-	MPMX19_00003	0.31	-1.0
3,201	-	MPMX19_00003	0.31	-1.7
3,201	-	MPMX19_00003	0.31	-0.9
3,201	-	MPMX19_00003	0.31	+0.2
3,201	-	MPMX19_00003	0.31	-0.3
3,201	-	MPMX19_00003	0.31	-1.0
3,201	-	MPMX19_00003	0.31	+0.4
3,201	-	MPMX19_00003	0.31	-0.1
3,201	-	MPMX19_00003	0.31	+1.3
3,317	+	MPMX19_00003	0.41	+0.0
3,317	+	MPMX19_00003	0.41	+1.8
3,317	+	MPMX19_00003	0.41	-1.1
3,317	+	MPMX19_00003	0.41	+0.8
3,318	-	MPMX19_00003	0.41	-0.3
3,318	-	MPMX19_00003	0.41	-0.3
3,318	-	MPMX19_00003	0.41	-0.0
3,318	-	MPMX19_00003	0.41	+2.2
3,318	-	MPMX19_00003	0.41	+1.3
3,318	-	MPMX19_00003	0.41	+0.4
3,356	+	MPMX19_00003	0.44	-0.1
3,357	-	MPMX19_00003	0.44	+1.0
3,383	+	MPMX19_00003	0.46	-0.8
3,398	+	MPMX19_00003	0.47	-1.7
3,398	+	MPMX19_00003	0.47	+0.2
3,398	+	MPMX19_00003	0.47	+0.4
3,398	+	MPMX19_00003	0.47	-1.4
3,398	+	MPMX19_00003	0.47	+0.3
3,398	+	MPMX19_00003	0.47	-0.1
3,398	+	MPMX19_00003	0.47	+0.4
3,399	-	MPMX19_00003	0.47	-0.6
3,399	-	MPMX19_00003	0.47	-0.2
3,399	-	MPMX19_00003	0.47	+0.8
3,399	-	MPMX19_00003	0.47	-0.1
3,399	-	MPMX19_00003	0.47	-1.4
3,399	-	MPMX19_00003	0.47	-1.4
3,797	+	MPMX19_00003	0.81	+1.8
3,797	+	MPMX19_00003	0.81	-0.0
3,798	-	MPMX19_00003	0.81	+0.5
3,818	+	MPMX19_00003	0.82	-1.2
3,818	+	MPMX19_00003	0.82	+0.4
3,818	+	MPMX19_00003	0.82	-0.8
3,818	+	MPMX19_00003	0.82	-0.3
3,818	+	MPMX19_00003	0.82	+0.0
3,818	+	MPMX19_00003	0.82	-0.4
3,819	-	MPMX19_00003	0.82	+1.0
3,819	-	MPMX19_00003	0.82	-0.6
3,819	-	MPMX19_00003	0.82	-0.0
3,819	-	MPMX19_00003	0.82	-1.6
3,819	-	MPMX19_00003	0.82	+0.2
3,819	-	MPMX19_00003	0.82	-0.3
3,842	+	MPMX19_00003	0.84	+0.0
3,842	+	MPMX19_00003	0.84	-0.1
3,842	+	MPMX19_00003	0.84	-1.4
3,842	+	MPMX19_00003	0.84	-0.1
3,843	-	MPMX19_00003	0.84	+1.8
3,843	-	MPMX19_00003	0.84	+0.0
3,843	-	MPMX19_00003	0.84	-1.7
3,843	-	MPMX19_00003	0.84	-0.7
3,843	-	MPMX19_00003	0.84	-1.8
3,843	-	MPMX19_00003	0.84	-0.7
3,983	+			-2.6
3,983	+			-0.9
3,983	+			-1.1
3,983	+			-0.2
3,983	+			+0.3
3,983	+			+0.0
3,984	-			+0.7
3,984	-			-0.6
3,984	-			-2.0
3,984	-			-0.4
3,984	-			+1.4
3,984	-			-1.3
3,984	-			-0.7
3,984	-			+0.4
3,984	-			+1.0
3,984	-			+0.4
3,984	-			-1.8
4,004	+			+1.4
4,004	+			-0.3
4,117	+			-0.5
4,117	+			-0.8
4,117	+			-0.0
4,117	+			-1.0
4,117	+			-1.8
4,117	+			-0.2
4,118	-			+1.2
4,118	-			+0.6
4,118	-			+0.5
4,118	-			+0.6
4,118	-			+0.9
4,118	-			-0.9
4,118	-			+0.7
4,617	+	MPMX19_00004	0.53	-2.5
4,617	+	MPMX19_00004	0.53	-1.4
4,617	+	MPMX19_00004	0.53	-0.1
4,617	+	MPMX19_00004	0.53	+0.4
4,617	+	MPMX19_00004	0.53	-0.1
4,617	+	MPMX19_00004	0.53	-0.8
4,617	+	MPMX19_00004	0.53	-0.8
4,617	+	MPMX19_00004	0.53	-1.8
4,617	+	MPMX19_00004	0.53	+0.8
4,617	+	MPMX19_00004	0.53	-0.5
4,617	+	MPMX19_00004	0.53	+1.5
4,617	+	MPMX19_00004	0.53	-1.1
4,617	+	MPMX19_00004	0.53	-1.3
4,617	+	MPMX19_00004	0.53	-2.4
4,617	+	MPMX19_00004	0.53	-1.0
4,617	+	MPMX19_00004	0.53	+0.4
4,617	+	MPMX19_00004	0.53	+0.8
4,617	+	MPMX19_00004	0.53	-1.8
4,617	+	MPMX19_00004	0.53	-2.2
4,617	+	MPMX19_00004	0.53	+0.0
4,617	+	MPMX19_00004	0.53	-0.1
4,617	+	MPMX19_00004	0.53	+0.7
4,617	+	MPMX19_00004	0.53	+0.4
4,617	+	MPMX19_00004	0.53	-0.7
4,617	+	MPMX19_00004	0.53	-2.4
4,617	+	MPMX19_00004	0.53	-1.4
4,617	+	MPMX19_00004	0.53	-1.1
4,617	+	MPMX19_00004	0.53	-0.3
4,617	+	MPMX19_00004	0.53	-0.7
4,617	+	MPMX19_00004	0.53	+0.1
4,617	+	MPMX19_00004	0.53	-0.5
4,617	+	MPMX19_00004	0.53	-1.0
4,617	+	MPMX19_00004	0.53	-0.1
4,617	+	MPMX19_00004	0.53	-1.1
4,617	+	MPMX19_00004	0.53	-0.4
4,617	+	MPMX19_00004	0.53	-0.3
4,618	-	MPMX19_00004	0.53	+0.0
4,618	-	MPMX19_00004	0.53	-0.1
4,618	-	MPMX19_00004	0.53	-0.1
4,618	-	MPMX19_00004	0.53	+0.3
4,618	-	MPMX19_00004	0.53	+0.3
4,618	-	MPMX19_00004	0.53	-0.7
4,618	-	MPMX19_00004	0.53	-0.5
4,618	-	MPMX19_00004	0.53	-1.4
4,618	-	MPMX19_00004	0.53	-0.1
4,618	-	MPMX19_00004	0.53	-0.7
4,618	-	MPMX19_00004	0.53	-2.3
4,618	-	MPMX19_00004	0.53	-0.3
4,618	-	MPMX19_00004	0.53	-0.2
4,618	-	MPMX19_00004	0.53	-0.8
4,618	-	MPMX19_00004	0.53	-0.7
4,618	-	MPMX19_00004	0.53	+0.0
4,618	-	MPMX19_00004	0.53	-0.8
4,618	-	MPMX19_00004	0.53	-0.7
4,618	-	MPMX19_00004	0.53	-0.1
4,618	-	MPMX19_00004	0.53	-0.4
4,618	-	MPMX19_00004	0.53	-0.4
4,618	-	MPMX19_00004	0.53	+0.2
4,618	-	MPMX19_00004	0.53	+0.2
4,618	-	MPMX19_00004	0.53	+0.0
4,618	-	MPMX19_00004	0.53	-1.0
4,618	-	MPMX19_00004	0.53	+0.7
4,618	-	MPMX19_00004	0.53	+0.9
4,618	-	MPMX19_00004	0.53	+0.9
4,618	-	MPMX19_00004	0.53	+0.0
4,716	+	MPMX19_00004	0.62	+2.0
4,716	+	MPMX19_00004	0.62	+0.3
4,716	+	MPMX19_00004	0.62	+1.2
4,716	+	MPMX19_00004	0.62	+0.5
4,716	+	MPMX19_00004	0.62	-0.9
4,716	+	MPMX19_00004	0.62	+0.2
4,716	+	MPMX19_00004	0.62	+0.4
4,716	+	MPMX19_00004	0.62	+0.6
4,716	+	MPMX19_00004	0.62	-0.2
4,716	+	MPMX19_00004	0.62	-0.4
4,716	+	MPMX19_00004	0.62	-0.5
4,716	+	MPMX19_00004	0.62	-0.5
4,716	+	MPMX19_00004	0.62	-0.3
4,716	+	MPMX19_00004	0.62	+0.0
4,716	+	MPMX19_00004	0.62	-0.1
4,716	+	MPMX19_00004	0.62	-0.1
4,716	+	MPMX19_00004	0.62	-0.9
4,716	+	MPMX19_00004	0.62	-0.9
4,716	+	MPMX19_00004	0.62	-0.7
4,716	+	MPMX19_00004	0.62	+1.4
4,716	+	MPMX19_00004	0.62	-1.9
4,716	+	MPMX19_00004	0.62	+0.3
4,716	+	MPMX19_00004	0.62	+1.6
4,717	-	MPMX19_00004	0.62	-1.1
4,717	-	MPMX19_00004	0.62	-0.5
4,717	-	MPMX19_00004	0.62	+0.2
4,717	-	MPMX19_00004	0.62	-0.3
4,717	-	MPMX19_00004	0.62	+1.8
4,717	-	MPMX19_00004	0.62	-1.0
4,717	-	MPMX19_00004	0.62	-0.5
4,717	-	MPMX19_00004	0.62	+1.8
4,717	-	MPMX19_00004	0.62	-0.2
4,717	-	MPMX19_00004	0.62	-0.2
4,717	-	MPMX19_00004	0.62	+0.1
4,717	-	MPMX19_00004	0.62	-1.1
4,717	-	MPMX19_00004	0.62	-1.4
4,717	-	MPMX19_00004	0.62	+1.8
4,717	-	MPMX19_00004	0.62	-0.7
4,717	-	MPMX19_00004	0.62	+1.4
4,717	-	MPMX19_00004	0.62	-0.3
4,717	-	MPMX19_00004	0.62	-0.8
4,717	-	MPMX19_00004	0.62	+2.0
4,717	-	MPMX19_00004	0.62	-0.4
4,717	-	MPMX19_00004	0.62	+0.4
4,717	-	MPMX19_00004	0.62	-1.5
4,717	-	MPMX19_00004	0.62	-0.6
4,717	-	MPMX19_00004	0.62	-1.1
4,717	-	MPMX19_00004	0.62	+0.6
4,884	+	MPMX19_00004	0.78	+0.2
4,884	+	MPMX19_00004	0.78	-0.0
4,884	+	MPMX19_00004	0.78	-1.7
4,884	+	MPMX19_00004	0.78	-1.0
4,884	+	MPMX19_00004	0.78	-0.6
4,884	+	MPMX19_00004	0.78	-0.5
4,884	+	MPMX19_00004	0.78	-0.3
4,884	+	MPMX19_00004	0.78	-1.0
4,884	+	MPMX19_00004	0.78	-0.9
4,884	+	MPMX19_00004	0.78	-0.3
4,884	+	MPMX19_00004	0.78	+0.4
4,884	+	MPMX19_00004	0.78	-1.4
4,885	-	MPMX19_00004	0.78	-0.1
4,885	-	MPMX19_00004	0.78	+0.5
4,885	-	MPMX19_00004	0.78	+1.0
4,885	-	MPMX19_00004	0.78	-1.0
4,885	-	MPMX19_00004	0.78	+0.2
4,885	-	MPMX19_00004	0.78	+0.4
4,885	-	MPMX19_00004	0.78	+0.0
4,885	-	MPMX19_00004	0.78	+0.7
4,885	-	MPMX19_00004	0.78	+0.0
4,885	-	MPMX19_00004	0.78	-0.1

Or see this region's nucleotide sequence