Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_00001

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_00001 and MPMX19_00002 are separated by 127 nucleotides MPMX19_00001: MPMX19_00001 - Chromosomal replication initiator protein DnaA, at 1 to 1,569 _00001 MPMX19_00002: MPMX19_00002 - Response regulator PleD, at 1,697 to 2,623 _00002 Position (kb) 0 1 2Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1.653 kb on - strandat 1.653 kb on - strandat 1.708 kb on + strandat 1.708 kb on + strandat 1.709 kb on - strandat 1.709 kb on - strandat 1.775 kb on + strandat 1.776 kb on - strandat 1.821 kb on - strand, within MPMX19_00002at 1.821 kb on - strand, within MPMX19_00002at 2.105 kb on + strand, within MPMX19_00002at 2.105 kb on + strand, within MPMX19_00002at 2.106 kb on - strand, within MPMX19_00002at 2.106 kb on - strand, within MPMX19_00002at 2.106 kb on - strand, within MPMX19_00002at 2.106 kb on - strand, within MPMX19_00002at 2.106 kb on - strand, within MPMX19_00002at 2.106 kb on - strand, within MPMX19_00002at 2.132 kb on + strand, within MPMX19_00002at 2.132 kb on + strand, within MPMX19_00002at 2.132 kb on + strand, within MPMX19_00002at 2.132 kb on + strand, within MPMX19_00002at 2.132 kb on + strand, within MPMX19_00002at 2.133 kb on - strand, within MPMX19_00002at 2.133 kb on - strand, within MPMX19_00002at 2.133 kb on - strand, within MPMX19_00002at 2.133 kb on - strand, within MPMX19_00002at 2.133 kb on - strand, within MPMX19_00002at 2.159 kb on + strand, within MPMX19_00002at 2.240 kb on + strand, within MPMX19_00002at 2.240 kb on + strand, within MPMX19_00002at 2.240 kb on + strand, within MPMX19_00002at 2.240 kb on + strand, within MPMX19_00002at 2.240 kb on + strand, within MPMX19_00002at 2.240 kb on + strand, within MPMX19_00002at 2.240 kb on + strand, within MPMX19_00002at 2.240 kb on + strand, within MPMX19_00002at 2.240 kb on + strand, within MPMX19_00002at 2.240 kb on + strand, within MPMX19_00002at 2.240 kb on + strand, within MPMX19_00002at 2.240 kb on + strand, within MPMX19_00002at 2.240 kb on + strand, within MPMX19_00002at 2.240 kb on + strand, within MPMX19_00002at 2.240 kb on + strand, within MPMX19_00002at 2.240 kb on + strand, within MPMX19_00002at 2.240 kb on + strand, within MPMX19_00002at 2.240 kb on + strand, within MPMX19_00002at 2.240 kb on + strand, within MPMX19_00002at 2.240 kb on + strand, within MPMX19_00002at 2.240 kb on + strand, within MPMX19_00002at 2.240 kb on + strand, within MPMX19_00002at 2.240 kb on + strand, within MPMX19_00002at 2.240 kb on + strand, within MPMX19_00002at 2.240 kb on + strand, within MPMX19_00002at 2.240 kb on + strand, within MPMX19_00002at 2.240 kb on + strand, within MPMX19_00002at 2.240 kb on + strand, within MPMX19_00002at 2.240 kb on + strand, within MPMX19_00002at 2.241 kb on - strand, within MPMX19_00002at 2.241 kb on - strand, within MPMX19_00002at 2.241 kb on - strand, within MPMX19_00002at 2.241 kb on - strand, within MPMX19_00002at 2.241 kb on - strand, within MPMX19_00002at 2.241 kb on - strand, within MPMX19_00002at 2.241 kb on - strand, within MPMX19_00002at 2.241 kb on - strand, within MPMX19_00002at 2.241 kb on - strand, within MPMX19_00002at 2.241 kb on - strand, within MPMX19_00002at 2.241 kb on - strand, within MPMX19_00002at 2.241 kb on - strand, within MPMX19_00002at 2.241 kb on - strand, within MPMX19_00002at 2.241 kb on - strand, within MPMX19_00002at 2.241 kb on - strand, within MPMX19_00002at 2.241 kb on - strand, within MPMX19_00002at 2.241 kb on - strand, within MPMX19_00002at 2.241 kb on - strand, within MPMX19_00002at 2.241 kb on - strand, within MPMX19_00002at 2.537 kb on + strandat 2.537 kb on + strandat 2.537 kb on + strandat 2.537 kb on + strandat 2.537 kb on + strandat 2.537 kb on + strandat 2.538 kb on - strandat 2.538 kb on - strandat 2.538 kb on - strandat 2.538 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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1,653 - +0.6
1,653 - +1.0
1,708 + +0.2
1,708 + +0.2
1,709 - +1.2
1,709 - -0.1
1,775 + -1.1
1,776 - -0.6
1,821 - MPMX19_00002 0.13 +0.0
1,821 - MPMX19_00002 0.13 +0.5
2,105 + MPMX19_00002 0.44 +0.0
2,105 + MPMX19_00002 0.44 -0.8
2,106 - MPMX19_00002 0.44 -0.4
2,106 - MPMX19_00002 0.44 -0.7
2,106 - MPMX19_00002 0.44 -0.8
2,106 - MPMX19_00002 0.44 +0.1
2,106 - MPMX19_00002 0.44 -1.4
2,106 - MPMX19_00002 0.44 -1.4
2,132 + MPMX19_00002 0.47 +0.0
2,132 + MPMX19_00002 0.47 -0.2
2,132 + MPMX19_00002 0.47 -0.6
2,132 + MPMX19_00002 0.47 +1.6
2,132 + MPMX19_00002 0.47 +0.2
2,133 - MPMX19_00002 0.47 -0.5
2,133 - MPMX19_00002 0.47 -1.0
2,133 - MPMX19_00002 0.47 +2.4
2,133 - MPMX19_00002 0.47 +0.3
2,133 - MPMX19_00002 0.47 +0.0
2,159 + MPMX19_00002 0.50 -0.0
2,240 + MPMX19_00002 0.59 +0.4
2,240 + MPMX19_00002 0.59 +0.8
2,240 + MPMX19_00002 0.59 +0.8
2,240 + MPMX19_00002 0.59 +1.4
2,240 + MPMX19_00002 0.59 +0.5
2,240 + MPMX19_00002 0.59 +1.1
2,240 + MPMX19_00002 0.59 -0.4
2,240 + MPMX19_00002 0.59 -2.1
2,240 + MPMX19_00002 0.59 -1.3
2,240 + MPMX19_00002 0.59 +0.4
2,240 + MPMX19_00002 0.59 -0.3
2,240 + MPMX19_00002 0.59 -0.8
2,240 + MPMX19_00002 0.59 +0.8
2,240 + MPMX19_00002 0.59 +0.4
2,240 + MPMX19_00002 0.59 +0.7
2,240 + MPMX19_00002 0.59 +0.8
2,240 + MPMX19_00002 0.59 -0.1
2,240 + MPMX19_00002 0.59 -1.0
2,240 + MPMX19_00002 0.59 -0.1
2,240 + MPMX19_00002 0.59 -0.2
2,240 + MPMX19_00002 0.59 -0.6
2,240 + MPMX19_00002 0.59 +1.4
2,240 + MPMX19_00002 0.59 +0.0
2,240 + MPMX19_00002 0.59 +0.2
2,240 + MPMX19_00002 0.59 +0.7
2,240 + MPMX19_00002 0.59 -0.0
2,240 + MPMX19_00002 0.59 +0.0
2,240 + MPMX19_00002 0.59 -0.2
2,240 + MPMX19_00002 0.59 -0.4
2,241 - MPMX19_00002 0.59 -0.9
2,241 - MPMX19_00002 0.59 +2.8
2,241 - MPMX19_00002 0.59 -1.0
2,241 - MPMX19_00002 0.59 +1.0
2,241 - MPMX19_00002 0.59 -1.7
2,241 - MPMX19_00002 0.59 +0.6
2,241 - MPMX19_00002 0.59 +0.9
2,241 - MPMX19_00002 0.59 +0.6
2,241 - MPMX19_00002 0.59 +2.4
2,241 - MPMX19_00002 0.59 +0.1
2,241 - MPMX19_00002 0.59 -0.1
2,241 - MPMX19_00002 0.59 -0.6
2,241 - MPMX19_00002 0.59 -0.5
2,241 - MPMX19_00002 0.59 +1.0
2,241 - MPMX19_00002 0.59 -0.8
2,241 - MPMX19_00002 0.59 +0.9
2,241 - MPMX19_00002 0.59 -0.1
2,241 - MPMX19_00002 0.59 -2.0
2,241 - MPMX19_00002 0.59 -1.0
2,537 + -1.4
2,537 + +0.0
2,537 + +0.1
2,537 + -0.2
2,537 + -0.3
2,537 + +0.2
2,538 - -0.8
2,538 - -0.8
2,538 - -0.4
2,538 - -0.8

Or see this region's nucleotide sequence