Experiment: Mixed culture; Methylosinus sp. DMC45 1:1 with Pseudomonas_DMC3_ML3; dNMS with methane
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF742 and GFF743 are separated by 111 nucleotides GFF743 and GFF744 are separated by 136 nucleotides GFF744 and GFF745 are separated by 35 nucleotides
GFF742 - hypothetical protein, at 59,838 to 61,010
GFF742
GFF743 - hypothetical protein, at 61,122 to 62,255
GFF743
GFF744 - Linear gramicidin dehydrogenase LgrE, at 62,392 to 63,132
GFF744
GFF745 - hypothetical protein, at 63,168 to 64,151
GFF745
Position (kb) 61
62
63 Strain fitness (log2 ratio) -1
0
1
2 at 60.232 kb on - strand, within GFF742 at 60.232 kb on - strand, within GFF742 at 60.232 kb on - strand, within GFF742 at 60.232 kb on - strand, within GFF742 at 60.232 kb on - strand, within GFF742 at 60.262 kb on - strand, within GFF742 at 60.262 kb on - strand, within GFF742 at 60.296 kb on + strand, within GFF742 at 60.585 kb on - strand, within GFF742 at 60.585 kb on - strand, within GFF742 at 60.600 kb on + strand, within GFF742 at 60.679 kb on - strand, within GFF742 at 60.754 kb on + strand, within GFF742 at 61.056 kb on + strand at 61.061 kb on - strand at 61.061 kb on - strand at 61.061 kb on - strand at 61.068 kb on + strand at 61.068 kb on + strand at 61.068 kb on + strand at 61.069 kb on - strand at 61.069 kb on - strand at 61.069 kb on - strand at 61.069 kb on - strand at 61.075 kb on + strand at 61.075 kb on + strand at 61.075 kb on + strand at 61.075 kb on + strand at 61.076 kb on - strand at 61.110 kb on + strand at 61.110 kb on + strand at 61.110 kb on + strand at 61.110 kb on + strand at 61.110 kb on + strand at 61.110 kb on + strand at 61.111 kb on - strand at 61.111 kb on - strand at 61.111 kb on - strand at 61.279 kb on + strand, within GFF743 at 61.280 kb on - strand, within GFF743 at 61.501 kb on + strand, within GFF743 at 61.501 kb on + strand, within GFF743 at 61.502 kb on - strand, within GFF743 at 61.559 kb on - strand, within GFF743 at 61.673 kb on - strand, within GFF743 at 61.673 kb on - strand, within GFF743 at 61.798 kb on + strand, within GFF743 at 62.334 kb on + strand at 62.335 kb on - strand at 62.602 kb on + strand, within GFF744 at 62.602 kb on + strand, within GFF744 at 62.735 kb on - strand, within GFF744 at 63.146 kb on + strand at 63.146 kb on + strand at 63.147 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture; Methylosinus sp. DMC45 1:1 with Pseudomonas_DMC3_ML3; dNMS with methane remove 60,232 - GFF742 0.34 -0.3 60,232 - GFF742 0.34 -0.6 60,232 - GFF742 0.34 +0.7 60,232 - GFF742 0.34 -0.9 60,232 - GFF742 0.34 +0.4 60,262 - GFF742 0.36 -0.2 60,262 - GFF742 0.36 +2.1 60,296 + GFF742 0.39 -0.1 60,585 - GFF742 0.64 -0.4 60,585 - GFF742 0.64 +0.1 60,600 + GFF742 0.65 -0.1 60,679 - GFF742 0.72 -0.0 60,754 + GFF742 0.78 -1.2 61,056 + +0.1 61,061 - -0.2 61,061 - -0.8 61,061 - -1.7 61,068 + -0.7 61,068 + -0.1 61,068 + +0.4 61,069 - -0.7 61,069 - +0.8 61,069 - -1.6 61,069 - +0.2 61,075 + +1.2 61,075 + -1.3 61,075 + -0.1 61,075 + +0.5 61,076 - +0.6 61,110 + -0.1 61,110 + -1.1 61,110 + -0.1 61,110 + +0.4 61,110 + +0.1 61,110 + -0.2 61,111 - -0.5 61,111 - -0.9 61,111 - -1.0 61,279 + GFF743 0.14 -1.0 61,280 - GFF743 0.14 -0.2 61,501 + GFF743 0.33 -0.3 61,501 + GFF743 0.33 -0.3 61,502 - GFF743 0.34 +0.2 61,559 - GFF743 0.39 +1.1 61,673 - GFF743 0.49 -0.7 61,673 - GFF743 0.49 +0.5 61,798 + GFF743 0.60 +0.2 62,334 + +0.4 62,335 - +0.1 62,602 + GFF744 0.28 -0.1 62,602 + GFF744 0.28 +0.1 62,735 - GFF744 0.46 +0.4 63,146 + +0.7 63,146 + -0.2 63,147 - +0.6
Or see this region's nucleotide sequence