Strain Fitness in Pseudomonas sp. DMC3 around GFF1272

Experiment: Mixed culture; Methylosinus sp. DMC45 1:1 with Pseudomonas_DMC3_ML3; dNMS with methane

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1271 and GFF1272 are separated by 29 nucleotidesGFF1272 and GFF1273 are separated by 93 nucleotidesGFF1273 and GFF1274 are separated by 114 nucleotides GFF1271 - Fatty acid oxidation complex subunit alpha, at 19,949 to 22,096 GFF1271 GFF1272 - 3-ketoacyl-CoA thiolase, at 22,126 to 23,301 GFF1272 GFF1273 - hypothetical protein, at 23,395 to 23,631 GFF1273 GFF1274 - DNA topoisomerase 1, at 23,746 to 26,379 GFF1274 Position (kb) 22 23 24Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 21.468 kb on - strand, within GFF1271at 21.468 kb on - strand, within GFF1271at 21.468 kb on - strand, within GFF1271at 21.468 kb on - strand, within GFF1271at 21.563 kb on + strand, within GFF1271at 21.563 kb on + strand, within GFF1271at 21.563 kb on + strand, within GFF1271at 21.674 kb on + strand, within GFF1271at 21.674 kb on + strand, within GFF1271at 21.716 kb on + strand, within GFF1271at 21.716 kb on + strand, within GFF1271at 21.717 kb on - strand, within GFF1271at 21.723 kb on - strand, within GFF1271at 21.926 kb on + strandat 21.926 kb on + strandat 21.927 kb on - strandat 21.927 kb on - strandat 21.927 kb on - strandat 22.038 kb on - strandat 22.038 kb on - strandat 22.108 kb on + strandat 22.108 kb on + strandat 22.108 kb on + strandat 22.108 kb on + strandat 22.108 kb on + strandat 22.108 kb on + strandat 22.125 kb on + strandat 22.125 kb on + strandat 22.125 kb on + strandat 22.125 kb on + strandat 22.125 kb on + strandat 22.125 kb on + strandat 22.140 kb on + strandat 22.140 kb on + strandat 22.141 kb on - strandat 22.224 kb on + strandat 22.224 kb on + strandat 22.224 kb on + strandat 22.224 kb on + strandat 22.224 kb on + strandat 22.225 kb on - strandat 22.225 kb on - strandat 22.225 kb on - strandat 22.553 kb on - strand, within GFF1272at 22.720 kb on + strand, within GFF1272at 22.747 kb on + strand, within GFF1272at 22.747 kb on + strand, within GFF1272at 22.747 kb on + strand, within GFF1272at 22.747 kb on + strand, within GFF1272at 22.747 kb on + strand, within GFF1272at 22.748 kb on - strand, within GFF1272at 22.748 kb on - strand, within GFF1272at 22.748 kb on - strand, within GFF1272at 22.753 kb on + strand, within GFF1272at 22.754 kb on - strand, within GFF1272at 22.816 kb on - strand, within GFF1272at 22.846 kb on - strand, within GFF1272at 22.981 kb on + strand, within GFF1272at 22.981 kb on + strand, within GFF1272at 22.981 kb on + strand, within GFF1272at 22.982 kb on - strand, within GFF1272at 23.134 kb on - strand, within GFF1272at 23.190 kb on + strandat 23.250 kb on + strandat 23.250 kb on + strandat 23.250 kb on + strandat 23.250 kb on + strandat 23.251 kb on - strandat 23.251 kb on - strandat 23.359 kb on - strandat 23.403 kb on - strandat 23.416 kb on + strandat 23.416 kb on + strandat 23.417 kb on - strandat 23.417 kb on - strandat 23.417 kb on - strandat 23.425 kb on + strand, within GFF1273at 23.425 kb on + strand, within GFF1273at 23.425 kb on + strand, within GFF1273at 23.425 kb on + strand, within GFF1273at 23.426 kb on - strand, within GFF1273at 23.426 kb on - strand, within GFF1273at 23.426 kb on - strand, within GFF1273at 23.426 kb on - strand, within GFF1273at 23.448 kb on - strand, within GFF1273at 23.494 kb on + strand, within GFF1273at 23.494 kb on + strand, within GFF1273at 23.506 kb on + strand, within GFF1273at 23.671 kb on + strandat 23.671 kb on + strandat 23.671 kb on + strandat 23.671 kb on + strandat 23.671 kb on + strandat 23.672 kb on - strandat 23.672 kb on - strandat 23.672 kb on - strandat 23.678 kb on + strandat 23.678 kb on + strandat 23.678 kb on + strandat 23.678 kb on + strandat 23.678 kb on + strandat 23.678 kb on + strandat 23.678 kb on + strandat 23.678 kb on + strandat 23.678 kb on + strandat 23.679 kb on - strandat 23.680 kb on + strandat 23.680 kb on + strandat 23.680 kb on + strandat 23.680 kb on + strandat 23.680 kb on + strandat 23.680 kb on + strandat 23.680 kb on + strandat 23.680 kb on + strandat 23.680 kb on + strandat 23.680 kb on + strandat 23.680 kb on + strandat 23.680 kb on + strandat 23.680 kb on + strandat 23.680 kb on + strandat 23.680 kb on + strandat 23.680 kb on + strandat 23.680 kb on + strandat 23.680 kb on + strandat 23.681 kb on - strandat 23.681 kb on - strandat 23.681 kb on - strandat 23.681 kb on - strandat 23.681 kb on - strandat 23.682 kb on + strandat 23.682 kb on + strandat 23.682 kb on + strandat 23.682 kb on + strandat 23.682 kb on + strandat 23.682 kb on + strandat 23.682 kb on + strandat 23.682 kb on + strandat 23.682 kb on + strandat 23.682 kb on + strandat 23.682 kb on + strandat 23.682 kb on + strandat 23.684 kb on + strandat 23.684 kb on + strandat 23.722 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture; Methylosinus sp. DMC45 1:1 with Pseudomonas_DMC3_ML3; dNMS with methane
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21,468 - GFF1271 0.71 +0.1
21,468 - GFF1271 0.71 -1.7
21,468 - GFF1271 0.71 -0.0
21,468 - GFF1271 0.71 +1.0
21,563 + GFF1271 0.75 -0.2
21,563 + GFF1271 0.75 -0.6
21,563 + GFF1271 0.75 +0.4
21,674 + GFF1271 0.80 -0.7
21,674 + GFF1271 0.80 +0.5
21,716 + GFF1271 0.82 +0.7
21,716 + GFF1271 0.82 +0.8
21,717 - GFF1271 0.82 -0.7
21,723 - GFF1271 0.83 +0.6
21,926 + +0.4
21,926 + +1.4
21,927 - +0.2
21,927 - +0.4
21,927 - +0.5
22,038 - +0.2
22,038 - +0.7
22,108 + +1.0
22,108 + +0.1
22,108 + -0.3
22,108 + -0.6
22,108 + +0.4
22,108 + -0.2
22,125 + -1.8
22,125 + -0.2
22,125 + -0.4
22,125 + -0.3
22,125 + +0.3
22,125 + -0.1
22,140 + -0.4
22,140 + -0.4
22,141 - +0.6
22,224 + +0.8
22,224 + -0.6
22,224 + -0.5
22,224 + +0.7
22,224 + -1.2
22,225 - +0.7
22,225 - -0.6
22,225 - +1.1
22,553 - GFF1272 0.36 -0.5
22,720 + GFF1272 0.51 -1.1
22,747 + GFF1272 0.53 +1.3
22,747 + GFF1272 0.53 +0.3
22,747 + GFF1272 0.53 -0.6
22,747 + GFF1272 0.53 -0.5
22,747 + GFF1272 0.53 -0.2
22,748 - GFF1272 0.53 -0.1
22,748 - GFF1272 0.53 -0.2
22,748 - GFF1272 0.53 -2.3
22,753 + GFF1272 0.53 -0.5
22,754 - GFF1272 0.53 +0.4
22,816 - GFF1272 0.59 +0.1
22,846 - GFF1272 0.61 -0.1
22,981 + GFF1272 0.73 -0.2
22,981 + GFF1272 0.73 -0.6
22,981 + GFF1272 0.73 +0.4
22,982 - GFF1272 0.73 +0.0
23,134 - GFF1272 0.86 +0.6
23,190 + -0.3
23,250 + +0.4
23,250 + +0.4
23,250 + -0.2
23,250 + +2.4
23,251 - -1.7
23,251 - -0.7
23,359 - -0.0
23,403 - -0.1
23,416 + +0.9
23,416 + -0.8
23,417 - -3.5
23,417 - -0.2
23,417 - -0.8
23,425 + GFF1273 0.13 +0.4
23,425 + GFF1273 0.13 +1.1
23,425 + GFF1273 0.13 +0.6
23,425 + GFF1273 0.13 -1.3
23,426 - GFF1273 0.13 +0.6
23,426 - GFF1273 0.13 +0.6
23,426 - GFF1273 0.13 -0.9
23,426 - GFF1273 0.13 -0.3
23,448 - GFF1273 0.22 -0.6
23,494 + GFF1273 0.42 -1.0
23,494 + GFF1273 0.42 +0.2
23,506 + GFF1273 0.47 -0.6
23,671 + +0.9
23,671 + -0.4
23,671 + -0.3
23,671 + +1.0
23,671 + +0.6
23,672 - -0.8
23,672 - -1.0
23,672 - +0.4
23,678 + -2.1
23,678 + -1.3
23,678 + -1.4
23,678 + -1.6
23,678 + -0.5
23,678 + +0.2
23,678 + +0.2
23,678 + -1.4
23,678 + -0.0
23,679 - +0.1
23,680 + -0.4
23,680 + -0.1
23,680 + +0.3
23,680 + +0.7
23,680 + -0.7
23,680 + -0.2
23,680 + +0.5
23,680 + -0.6
23,680 + -1.5
23,680 + -0.3
23,680 + -0.8
23,680 + +1.0
23,680 + +0.4
23,680 + +1.1
23,680 + -1.0
23,680 + -0.0
23,680 + -0.3
23,680 + -0.4
23,681 - -0.6
23,681 - -0.6
23,681 - -0.6
23,681 - -0.6
23,681 - -0.6
23,682 + -0.9
23,682 + +1.0
23,682 + +0.1
23,682 + -0.7
23,682 + +0.1
23,682 + +1.3
23,682 + -0.2
23,682 + -0.9
23,682 + -0.4
23,682 + -0.6
23,682 + +0.1
23,682 + -0.4
23,684 + -0.9
23,684 + +0.5
23,722 + -0.1

Or see this region's nucleotide sequence