Experiment: BWC1S MOI10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OHPLBJKB_00184 and OHPLBJKB_00185 are separated by 210 nucleotides OHPLBJKB_00185 and OHPLBJKB_00186 are separated by 369 nucleotides
OHPLBJKB_00184: OHPLBJKB_00184 - hypothetical protein, at 200,402 to 201,799
_00184
OHPLBJKB_00185: OHPLBJKB_00185 - Glutamate decarboxylase alpha, at 202,010 to 203,410
_00185
OHPLBJKB_00186: OHPLBJKB_00186 - HTH-type transcriptional regulator GadX, at 203,780 to 204,604
_00186
Position (kb) 202
203
204 Strain fitness (log2 ratio) -2
-1
0
1
2 at 201.118 kb on - strand, within OHPLBJKB_00184 at 201.121 kb on + strand, within OHPLBJKB_00184 at 201.121 kb on + strand, within OHPLBJKB_00184 at 201.121 kb on + strand, within OHPLBJKB_00184 at 201.122 kb on - strand, within OHPLBJKB_00184 at 201.133 kb on + strand, within OHPLBJKB_00184 at 201.133 kb on + strand, within OHPLBJKB_00184 at 201.238 kb on + strand, within OHPLBJKB_00184 at 201.239 kb on - strand, within OHPLBJKB_00184 at 201.245 kb on - strand, within OHPLBJKB_00184 at 201.355 kb on + strand, within OHPLBJKB_00184 at 201.376 kb on + strand, within OHPLBJKB_00184 at 201.616 kb on + strand, within OHPLBJKB_00184 at 201.638 kb on + strand, within OHPLBJKB_00184 at 201.703 kb on - strand at 201.741 kb on + strand at 201.741 kb on + strand at 201.742 kb on - strand at 201.771 kb on - strand at 201.780 kb on - strand at 201.782 kb on - strand at 201.802 kb on - strand at 201.878 kb on - strand at 201.932 kb on + strand at 202.082 kb on - strand at 202.145 kb on - strand at 202.159 kb on - strand, within OHPLBJKB_00185 at 202.159 kb on - strand, within OHPLBJKB_00185 at 202.161 kb on - strand, within OHPLBJKB_00185 at 203.412 kb on - strand at 203.416 kb on + strand at 203.416 kb on + strand at 203.417 kb on - strand at 203.417 kb on - strand at 203.417 kb on - strand at 203.474 kb on + strand at 203.477 kb on + strand at 203.486 kb on + strand at 203.487 kb on - strand at 203.489 kb on + strand at 203.489 kb on + strand at 203.490 kb on - strand at 203.490 kb on - strand at 203.490 kb on - strand at 203.490 kb on - strand at 203.490 kb on - strand at 203.490 kb on - strand at 203.490 kb on - strand at 203.491 kb on + strand at 203.492 kb on - strand at 203.503 kb on - strand at 203.524 kb on + strand at 203.525 kb on - strand at 203.632 kb on + strand at 203.632 kb on + strand at 203.633 kb on - strand at 203.633 kb on - strand at 203.745 kb on - strand at 203.752 kb on - strand at 203.755 kb on - strand at 203.791 kb on - strand at 203.824 kb on + strand at 203.828 kb on + strand at 203.914 kb on + strand, within OHPLBJKB_00186 at 203.962 kb on - strand, within OHPLBJKB_00186 at 204.008 kb on - strand, within OHPLBJKB_00186 at 204.041 kb on - strand, within OHPLBJKB_00186 at 204.115 kb on - strand, within OHPLBJKB_00186 at 204.129 kb on + strand, within OHPLBJKB_00186 at 204.144 kb on + strand, within OHPLBJKB_00186 at 204.239 kb on - strand, within OHPLBJKB_00186 at 204.239 kb on - strand, within OHPLBJKB_00186 at 204.261 kb on + strand, within OHPLBJKB_00186 at 204.335 kb on + strand, within OHPLBJKB_00186 at 204.359 kb on - strand, within OHPLBJKB_00186
Per-strain Table
Position Strand Gene LocusTag Fraction BWC1S MOI10 remove 201,118 - OHPLBJKB_00184 0.51 -0.4 201,121 + OHPLBJKB_00184 0.51 +0.7 201,121 + OHPLBJKB_00184 0.51 -0.7 201,121 + OHPLBJKB_00184 0.51 -1.0 201,122 - OHPLBJKB_00184 0.52 -0.7 201,133 + OHPLBJKB_00184 0.52 +0.1 201,133 + OHPLBJKB_00184 0.52 -1.9 201,238 + OHPLBJKB_00184 0.60 +0.4 201,239 - OHPLBJKB_00184 0.60 -1.0 201,245 - OHPLBJKB_00184 0.60 -0.3 201,355 + OHPLBJKB_00184 0.68 +1.1 201,376 + OHPLBJKB_00184 0.70 -1.0 201,616 + OHPLBJKB_00184 0.87 +0.2 201,638 + OHPLBJKB_00184 0.88 -0.1 201,703 - +1.4 201,741 + -0.6 201,741 + -2.3 201,742 - +0.4 201,771 - -1.3 201,780 - -1.4 201,782 - -1.2 201,802 - +0.5 201,878 - -0.7 201,932 + -0.8 202,082 - -0.4 202,145 - -0.3 202,159 - OHPLBJKB_00185 0.11 -0.7 202,159 - OHPLBJKB_00185 0.11 -1.2 202,161 - OHPLBJKB_00185 0.11 -1.5 203,412 - +0.6 203,416 + -0.9 203,416 + -1.3 203,417 - +0.3 203,417 - -0.1 203,417 - -0.2 203,474 + -0.4 203,477 + -0.2 203,486 + -1.2 203,487 - +1.2 203,489 + -1.0 203,489 + +0.7 203,490 - +0.0 203,490 - -1.5 203,490 - +1.1 203,490 - +0.7 203,490 - -0.8 203,490 - -0.7 203,490 - +1.1 203,491 + -0.4 203,492 - +0.1 203,503 - +1.3 203,524 + +1.7 203,525 - +0.6 203,632 + -0.9 203,632 + -1.1 203,633 - +0.5 203,633 - +1.7 203,745 - +1.8 203,752 - -0.1 203,755 - -1.4 203,791 - +0.0 203,824 + -1.7 203,828 + -0.4 203,914 + OHPLBJKB_00186 0.16 +0.8 203,962 - OHPLBJKB_00186 0.22 -0.8 204,008 - OHPLBJKB_00186 0.28 -0.5 204,041 - OHPLBJKB_00186 0.32 -0.5 204,115 - OHPLBJKB_00186 0.41 +0.3 204,129 + OHPLBJKB_00186 0.42 -0.6 204,144 + OHPLBJKB_00186 0.44 -0.5 204,239 - OHPLBJKB_00186 0.56 -1.9 204,239 - OHPLBJKB_00186 0.56 -0.2 204,261 + OHPLBJKB_00186 0.58 -1.7 204,335 + OHPLBJKB_00186 0.67 -1.5 204,359 - OHPLBJKB_00186 0.70 +0.1
Or see this region's nucleotide sequence