Experiment: Z3 MOI1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OHPLBJKB_03698 and OHPLBJKB_03699 are separated by 618 nucleotides OHPLBJKB_03699 and OHPLBJKB_03700 overlap by 10 nucleotides OHPLBJKB_03700 and OHPLBJKB_03701 are separated by 107 nucleotides
OHPLBJKB_03698: OHPLBJKB_03698 - Putative transcription factor YjjQ, at 3,878,483 to 3,879,208
_03698
OHPLBJKB_03699: OHPLBJKB_03699 - Inner membrane protein YjjP, at 3,879,827 to 3,880,597
_03699
OHPLBJKB_03700: OHPLBJKB_03700 - hypothetical protein, at 3,880,588 to 3,881,061
_03700
OHPLBJKB_03701: OHPLBJKB_03701 - Primosomal protein 1, at 3,881,169 to 3,881,708
_03701
Position (kb)
3879
3880
3881 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3878.830 kb on + strand, within OHPLBJKB_03698 at 3878.843 kb on + strand, within OHPLBJKB_03698 at 3878.843 kb on + strand, within OHPLBJKB_03698 at 3878.991 kb on + strand, within OHPLBJKB_03698 at 3879.068 kb on + strand, within OHPLBJKB_03698 at 3879.076 kb on + strand, within OHPLBJKB_03698 at 3879.267 kb on + strand at 3879.335 kb on + strand at 3879.559 kb on - strand at 3879.642 kb on + strand at 3879.796 kb on + strand at 3879.973 kb on + strand, within OHPLBJKB_03699 at 3879.973 kb on + strand, within OHPLBJKB_03699 at 3879.973 kb on + strand, within OHPLBJKB_03699 at 3879.973 kb on + strand, within OHPLBJKB_03699 at 3879.974 kb on - strand, within OHPLBJKB_03699 at 3879.974 kb on - strand, within OHPLBJKB_03699 at 3879.974 kb on - strand, within OHPLBJKB_03699 at 3880.006 kb on + strand, within OHPLBJKB_03699 at 3880.057 kb on + strand, within OHPLBJKB_03699 at 3880.057 kb on + strand, within OHPLBJKB_03699 at 3880.058 kb on - strand, within OHPLBJKB_03699 at 3880.058 kb on - strand, within OHPLBJKB_03699 at 3880.060 kb on + strand, within OHPLBJKB_03699 at 3880.060 kb on + strand, within OHPLBJKB_03699 at 3880.060 kb on + strand, within OHPLBJKB_03699 at 3880.060 kb on + strand, within OHPLBJKB_03699 at 3880.061 kb on - strand, within OHPLBJKB_03699 at 3880.061 kb on - strand, within OHPLBJKB_03699 at 3880.061 kb on - strand, within OHPLBJKB_03699 at 3880.061 kb on - strand, within OHPLBJKB_03699 at 3880.121 kb on + strand, within OHPLBJKB_03699 at 3880.131 kb on + strand, within OHPLBJKB_03699 at 3880.161 kb on + strand, within OHPLBJKB_03699 at 3880.161 kb on + strand, within OHPLBJKB_03699 at 3880.162 kb on - strand, within OHPLBJKB_03699 at 3880.162 kb on - strand, within OHPLBJKB_03699 at 3880.162 kb on - strand, within OHPLBJKB_03699 at 3880.182 kb on + strand, within OHPLBJKB_03699 at 3880.283 kb on + strand, within OHPLBJKB_03699 at 3880.283 kb on + strand, within OHPLBJKB_03699 at 3880.283 kb on + strand, within OHPLBJKB_03699 at 3880.283 kb on + strand, within OHPLBJKB_03699 at 3880.283 kb on + strand, within OHPLBJKB_03699 at 3880.283 kb on + strand, within OHPLBJKB_03699 at 3880.283 kb on + strand, within OHPLBJKB_03699 at 3880.283 kb on + strand, within OHPLBJKB_03699 at 3880.284 kb on - strand, within OHPLBJKB_03699 at 3880.284 kb on - strand, within OHPLBJKB_03699 at 3880.284 kb on - strand, within OHPLBJKB_03699 at 3880.284 kb on - strand, within OHPLBJKB_03699 at 3880.284 kb on - strand, within OHPLBJKB_03699 at 3880.340 kb on - strand, within OHPLBJKB_03699 at 3880.340 kb on - strand, within OHPLBJKB_03699 at 3880.541 kb on - strand at 3880.541 kb on - strand at 3880.626 kb on + strand at 3880.742 kb on + strand, within OHPLBJKB_03700 at 3880.742 kb on + strand, within OHPLBJKB_03700 at 3880.742 kb on + strand, within OHPLBJKB_03700 at 3880.788 kb on + strand, within OHPLBJKB_03700 at 3880.788 kb on + strand, within OHPLBJKB_03700 at 3880.788 kb on + strand, within OHPLBJKB_03700 at 3880.788 kb on + strand, within OHPLBJKB_03700 at 3880.789 kb on - strand, within OHPLBJKB_03700 at 3880.789 kb on - strand, within OHPLBJKB_03700 at 3880.789 kb on - strand, within OHPLBJKB_03700 at 3880.789 kb on - strand, within OHPLBJKB_03700 at 3880.789 kb on - strand, within OHPLBJKB_03700 at 3880.789 kb on - strand, within OHPLBJKB_03700 at 3880.809 kb on + strand, within OHPLBJKB_03700 at 3880.809 kb on + strand, within OHPLBJKB_03700 at 3880.866 kb on + strand, within OHPLBJKB_03700 at 3880.932 kb on - strand, within OHPLBJKB_03700 at 3881.030 kb on + strand at 3881.030 kb on + strand at 3881.030 kb on + strand at 3881.030 kb on + strand at 3881.038 kb on + strand at 3881.058 kb on - strand at 3881.074 kb on + strand at 3881.119 kb on + strand at 3881.154 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Z3 MOI1 remove 3,878,830 + OHPLBJKB_03698 0.48 -0.5 3,878,843 + OHPLBJKB_03698 0.50 +0.2 3,878,843 + OHPLBJKB_03698 0.50 -0.2 3,878,991 + OHPLBJKB_03698 0.70 +0.1 3,879,068 + OHPLBJKB_03698 0.81 +1.9 3,879,076 + OHPLBJKB_03698 0.82 -0.8 3,879,267 + -1.2 3,879,335 + +0.4 3,879,559 - -0.8 3,879,642 + -0.7 3,879,796 + +1.4 3,879,973 + OHPLBJKB_03699 0.19 -0.3 3,879,973 + OHPLBJKB_03699 0.19 -1.7 3,879,973 + OHPLBJKB_03699 0.19 -0.9 3,879,973 + OHPLBJKB_03699 0.19 +1.2 3,879,974 - OHPLBJKB_03699 0.19 +0.9 3,879,974 - OHPLBJKB_03699 0.19 +0.8 3,879,974 - OHPLBJKB_03699 0.19 -0.1 3,880,006 + OHPLBJKB_03699 0.23 +1.0 3,880,057 + OHPLBJKB_03699 0.30 +0.3 3,880,057 + OHPLBJKB_03699 0.30 +0.9 3,880,058 - OHPLBJKB_03699 0.30 -1.2 3,880,058 - OHPLBJKB_03699 0.30 -1.8 3,880,060 + OHPLBJKB_03699 0.30 +0.9 3,880,060 + OHPLBJKB_03699 0.30 +0.6 3,880,060 + OHPLBJKB_03699 0.30 +2.2 3,880,060 + OHPLBJKB_03699 0.30 +1.4 3,880,061 - OHPLBJKB_03699 0.30 -0.0 3,880,061 - OHPLBJKB_03699 0.30 -1.1 3,880,061 - OHPLBJKB_03699 0.30 -0.6 3,880,061 - OHPLBJKB_03699 0.30 -2.5 3,880,121 + OHPLBJKB_03699 0.38 +0.5 3,880,131 + OHPLBJKB_03699 0.39 +1.6 3,880,161 + OHPLBJKB_03699 0.43 -1.2 3,880,161 + OHPLBJKB_03699 0.43 +0.7 3,880,162 - OHPLBJKB_03699 0.43 +0.6 3,880,162 - OHPLBJKB_03699 0.43 -0.5 3,880,162 - OHPLBJKB_03699 0.43 +0.4 3,880,182 + OHPLBJKB_03699 0.46 -1.7 3,880,283 + OHPLBJKB_03699 0.59 +2.5 3,880,283 + OHPLBJKB_03699 0.59 +0.5 3,880,283 + OHPLBJKB_03699 0.59 +2.1 3,880,283 + OHPLBJKB_03699 0.59 +0.7 3,880,283 + OHPLBJKB_03699 0.59 +0.5 3,880,283 + OHPLBJKB_03699 0.59 +0.8 3,880,283 + OHPLBJKB_03699 0.59 +1.1 3,880,283 + OHPLBJKB_03699 0.59 +1.8 3,880,284 - OHPLBJKB_03699 0.59 +0.9 3,880,284 - OHPLBJKB_03699 0.59 +0.0 3,880,284 - OHPLBJKB_03699 0.59 -0.1 3,880,284 - OHPLBJKB_03699 0.59 -0.9 3,880,284 - OHPLBJKB_03699 0.59 -0.1 3,880,340 - OHPLBJKB_03699 0.67 -0.6 3,880,340 - OHPLBJKB_03699 0.67 +0.2 3,880,541 - -1.0 3,880,541 - -1.2 3,880,626 + +0.2 3,880,742 + OHPLBJKB_03700 0.32 +1.3 3,880,742 + OHPLBJKB_03700 0.32 -1.4 3,880,742 + OHPLBJKB_03700 0.32 -1.2 3,880,788 + OHPLBJKB_03700 0.42 -1.8 3,880,788 + OHPLBJKB_03700 0.42 -1.5 3,880,788 + OHPLBJKB_03700 0.42 -0.8 3,880,788 + OHPLBJKB_03700 0.42 -0.1 3,880,789 - OHPLBJKB_03700 0.42 +0.7 3,880,789 - OHPLBJKB_03700 0.42 +0.7 3,880,789 - OHPLBJKB_03700 0.42 +0.3 3,880,789 - OHPLBJKB_03700 0.42 +1.2 3,880,789 - OHPLBJKB_03700 0.42 -0.3 3,880,789 - OHPLBJKB_03700 0.42 -0.5 3,880,809 + OHPLBJKB_03700 0.47 +2.3 3,880,809 + OHPLBJKB_03700 0.47 +1.1 3,880,866 + OHPLBJKB_03700 0.59 -2.2 3,880,932 - OHPLBJKB_03700 0.73 -1.5 3,881,030 + -0.2 3,881,030 + +1.1 3,881,030 + -0.3 3,881,030 + -2.2 3,881,038 + -1.4 3,881,058 - +1.1 3,881,074 + -1.4 3,881,119 + +0.8 3,881,154 + +1.6
Or see this region's nucleotide sequence