Experiment: Z3 MOI1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OHPLBJKB_02050 and OHPLBJKB_02051 are separated by 20 nucleotides OHPLBJKB_02051 and OHPLBJKB_02052 are separated by 12 nucleotides OHPLBJKB_02052 and OHPLBJKB_02053 are separated by 63 nucleotides
OHPLBJKB_02050: OHPLBJKB_02050 - putative ferredoxin-like protein YdhY, at 2,126,143 to 2,126,769
_02050
OHPLBJKB_02051: OHPLBJKB_02051 - putative oxidoreductase YdhV, at 2,126,790 to 2,128,892
_02051
OHPLBJKB_02052: OHPLBJKB_02052 - putative protein YdhW, at 2,128,905 to 2,129,543
_02052
OHPLBJKB_02053: OHPLBJKB_02053 - putative ferredoxin-like protein YdhX, at 2,129,607 to 2,130,275
_02053
Position (kb)
2126
2127
2128
2129 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2125.904 kb on - strand at 2125.986 kb on + strand at 2126.166 kb on - strand at 2126.168 kb on + strand at 2126.168 kb on + strand at 2126.169 kb on - strand at 2126.202 kb on + strand at 2126.203 kb on - strand at 2126.303 kb on + strand, within OHPLBJKB_02050 at 2126.303 kb on + strand, within OHPLBJKB_02050 at 2126.307 kb on + strand, within OHPLBJKB_02050 at 2126.376 kb on + strand, within OHPLBJKB_02050 at 2126.437 kb on + strand, within OHPLBJKB_02050 at 2126.437 kb on + strand, within OHPLBJKB_02050 at 2126.586 kb on + strand, within OHPLBJKB_02050 at 2126.586 kb on + strand, within OHPLBJKB_02050 at 2126.587 kb on - strand, within OHPLBJKB_02050 at 2126.587 kb on - strand, within OHPLBJKB_02050 at 2126.589 kb on + strand, within OHPLBJKB_02050 at 2126.611 kb on - strand, within OHPLBJKB_02050 at 2126.632 kb on - strand, within OHPLBJKB_02050 at 2126.661 kb on - strand, within OHPLBJKB_02050 at 2126.814 kb on - strand at 2126.815 kb on + strand at 2126.843 kb on + strand at 2126.909 kb on + strand at 2126.914 kb on - strand at 2127.122 kb on + strand, within OHPLBJKB_02051 at 2127.361 kb on + strand, within OHPLBJKB_02051 at 2127.453 kb on + strand, within OHPLBJKB_02051 at 2127.453 kb on + strand, within OHPLBJKB_02051 at 2127.471 kb on - strand, within OHPLBJKB_02051 at 2127.471 kb on - strand, within OHPLBJKB_02051 at 2127.471 kb on - strand, within OHPLBJKB_02051 at 2127.503 kb on + strand, within OHPLBJKB_02051 at 2127.504 kb on - strand, within OHPLBJKB_02051 at 2127.504 kb on - strand, within OHPLBJKB_02051 at 2127.525 kb on + strand, within OHPLBJKB_02051 at 2127.526 kb on - strand, within OHPLBJKB_02051 at 2127.557 kb on + strand, within OHPLBJKB_02051 at 2127.557 kb on + strand, within OHPLBJKB_02051 at 2127.630 kb on - strand, within OHPLBJKB_02051 at 2127.645 kb on - strand, within OHPLBJKB_02051 at 2127.649 kb on - strand, within OHPLBJKB_02051 at 2127.649 kb on - strand, within OHPLBJKB_02051 at 2127.649 kb on - strand, within OHPLBJKB_02051 at 2127.650 kb on + strand, within OHPLBJKB_02051 at 2127.651 kb on - strand, within OHPLBJKB_02051 at 2127.687 kb on + strand, within OHPLBJKB_02051 at 2127.687 kb on + strand, within OHPLBJKB_02051 at 2127.688 kb on - strand, within OHPLBJKB_02051 at 2127.688 kb on - strand, within OHPLBJKB_02051 at 2127.731 kb on + strand, within OHPLBJKB_02051 at 2127.731 kb on + strand, within OHPLBJKB_02051 at 2127.731 kb on + strand, within OHPLBJKB_02051 at 2127.731 kb on + strand, within OHPLBJKB_02051 at 2127.732 kb on - strand, within OHPLBJKB_02051 at 2127.789 kb on - strand, within OHPLBJKB_02051 at 2127.878 kb on + strand, within OHPLBJKB_02051 at 2127.916 kb on + strand, within OHPLBJKB_02051 at 2127.916 kb on + strand, within OHPLBJKB_02051 at 2127.923 kb on + strand, within OHPLBJKB_02051 at 2127.924 kb on - strand, within OHPLBJKB_02051 at 2127.924 kb on - strand, within OHPLBJKB_02051 at 2127.927 kb on + strand, within OHPLBJKB_02051 at 2127.927 kb on + strand, within OHPLBJKB_02051 at 2127.928 kb on - strand, within OHPLBJKB_02051 at 2127.928 kb on - strand, within OHPLBJKB_02051 at 2127.950 kb on + strand, within OHPLBJKB_02051 at 2127.950 kb on + strand, within OHPLBJKB_02051 at 2127.951 kb on - strand, within OHPLBJKB_02051 at 2127.951 kb on - strand, within OHPLBJKB_02051 at 2127.954 kb on + strand, within OHPLBJKB_02051 at 2127.955 kb on - strand, within OHPLBJKB_02051 at 2127.955 kb on - strand, within OHPLBJKB_02051 at 2128.002 kb on + strand, within OHPLBJKB_02051 at 2128.066 kb on - strand, within OHPLBJKB_02051 at 2128.116 kb on + strand, within OHPLBJKB_02051 at 2128.116 kb on + strand, within OHPLBJKB_02051 at 2128.117 kb on - strand, within OHPLBJKB_02051 at 2128.117 kb on - strand, within OHPLBJKB_02051 at 2128.153 kb on - strand, within OHPLBJKB_02051 at 2128.245 kb on - strand, within OHPLBJKB_02051 at 2128.245 kb on - strand, within OHPLBJKB_02051 at 2128.250 kb on + strand, within OHPLBJKB_02051 at 2128.250 kb on + strand, within OHPLBJKB_02051 at 2128.250 kb on + strand, within OHPLBJKB_02051 at 2128.250 kb on + strand, within OHPLBJKB_02051 at 2128.250 kb on + strand, within OHPLBJKB_02051 at 2128.250 kb on + strand, within OHPLBJKB_02051 at 2128.250 kb on + strand, within OHPLBJKB_02051 at 2128.250 kb on + strand, within OHPLBJKB_02051 at 2128.250 kb on + strand, within OHPLBJKB_02051 at 2128.250 kb on + strand, within OHPLBJKB_02051 at 2128.251 kb on - strand, within OHPLBJKB_02051 at 2128.251 kb on - strand, within OHPLBJKB_02051 at 2128.251 kb on - strand, within OHPLBJKB_02051 at 2128.251 kb on - strand, within OHPLBJKB_02051 at 2128.251 kb on - strand, within OHPLBJKB_02051 at 2128.251 kb on - strand, within OHPLBJKB_02051 at 2128.277 kb on + strand, within OHPLBJKB_02051 at 2128.278 kb on - strand, within OHPLBJKB_02051 at 2128.292 kb on + strand, within OHPLBJKB_02051 at 2128.380 kb on + strand, within OHPLBJKB_02051 at 2128.407 kb on - strand, within OHPLBJKB_02051 at 2128.410 kb on + strand, within OHPLBJKB_02051 at 2128.411 kb on - strand, within OHPLBJKB_02051 at 2128.411 kb on - strand, within OHPLBJKB_02051 at 2128.415 kb on + strand, within OHPLBJKB_02051 at 2128.415 kb on + strand, within OHPLBJKB_02051 at 2128.416 kb on - strand, within OHPLBJKB_02051 at 2128.464 kb on - strand, within OHPLBJKB_02051 at 2128.588 kb on + strand, within OHPLBJKB_02051 at 2128.607 kb on + strand, within OHPLBJKB_02051 at 2128.608 kb on - strand, within OHPLBJKB_02051 at 2128.652 kb on + strand, within OHPLBJKB_02051 at 2128.776 kb on + strand at 2128.850 kb on + strand at 2128.851 kb on - strand at 2128.851 kb on - strand at 2128.851 kb on - strand at 2128.879 kb on + strand at 2128.879 kb on + strand at 2128.880 kb on - strand at 2128.880 kb on - strand at 2129.145 kb on - strand, within OHPLBJKB_02052 at 2129.145 kb on - strand, within OHPLBJKB_02052 at 2129.177 kb on + strand, within OHPLBJKB_02052 at 2129.178 kb on - strand, within OHPLBJKB_02052 at 2129.200 kb on - strand, within OHPLBJKB_02052 at 2129.203 kb on - strand, within OHPLBJKB_02052 at 2129.205 kb on + strand, within OHPLBJKB_02052 at 2129.206 kb on - strand, within OHPLBJKB_02052 at 2129.206 kb on - strand, within OHPLBJKB_02052 at 2129.313 kb on + strand, within OHPLBJKB_02052 at 2129.314 kb on - strand, within OHPLBJKB_02052 at 2129.325 kb on + strand, within OHPLBJKB_02052 at 2129.356 kb on - strand, within OHPLBJKB_02052 at 2129.358 kb on + strand, within OHPLBJKB_02052 at 2129.358 kb on + strand, within OHPLBJKB_02052 at 2129.358 kb on + strand, within OHPLBJKB_02052 at 2129.359 kb on - strand, within OHPLBJKB_02052 at 2129.359 kb on - strand, within OHPLBJKB_02052 at 2129.359 kb on - strand, within OHPLBJKB_02052 at 2129.359 kb on - strand, within OHPLBJKB_02052 at 2129.425 kb on + strand, within OHPLBJKB_02052 at 2129.426 kb on - strand, within OHPLBJKB_02052 at 2129.457 kb on + strand, within OHPLBJKB_02052 at 2129.457 kb on + strand, within OHPLBJKB_02052 at 2129.457 kb on + strand, within OHPLBJKB_02052 at 2129.458 kb on - strand, within OHPLBJKB_02052 at 2129.478 kb on - strand, within OHPLBJKB_02052 at 2129.496 kb on + strand at 2129.497 kb on - strand at 2129.503 kb on + strand at 2129.504 kb on - strand at 2129.600 kb on + strand at 2129.757 kb on - strand, within OHPLBJKB_02053 at 2129.819 kb on - strand, within OHPLBJKB_02053 at 2129.859 kb on + strand, within OHPLBJKB_02053
Per-strain Table
Position Strand Gene LocusTag Fraction Z3 MOI1 remove 2,125,904 - -0.9 2,125,986 + +0.4 2,126,166 - -0.3 2,126,168 + +0.7 2,126,168 + -0.4 2,126,169 - +0.7 2,126,202 + +0.9 2,126,203 - -0.3 2,126,303 + OHPLBJKB_02050 0.26 -0.3 2,126,303 + OHPLBJKB_02050 0.26 -1.0 2,126,307 + OHPLBJKB_02050 0.26 +0.6 2,126,376 + OHPLBJKB_02050 0.37 +0.4 2,126,437 + OHPLBJKB_02050 0.47 +0.0 2,126,437 + OHPLBJKB_02050 0.47 -0.1 2,126,586 + OHPLBJKB_02050 0.71 -0.6 2,126,586 + OHPLBJKB_02050 0.71 +0.8 2,126,587 - OHPLBJKB_02050 0.71 +0.9 2,126,587 - OHPLBJKB_02050 0.71 +0.2 2,126,589 + OHPLBJKB_02050 0.71 -1.6 2,126,611 - OHPLBJKB_02050 0.75 -1.5 2,126,632 - OHPLBJKB_02050 0.78 +0.1 2,126,661 - OHPLBJKB_02050 0.83 -0.2 2,126,814 - -1.9 2,126,815 + -1.7 2,126,843 + +0.2 2,126,909 + -0.4 2,126,914 - +0.2 2,127,122 + OHPLBJKB_02051 0.16 +2.1 2,127,361 + OHPLBJKB_02051 0.27 -0.1 2,127,453 + OHPLBJKB_02051 0.32 +0.4 2,127,453 + OHPLBJKB_02051 0.32 -2.3 2,127,471 - OHPLBJKB_02051 0.32 -1.1 2,127,471 - OHPLBJKB_02051 0.32 +0.7 2,127,471 - OHPLBJKB_02051 0.32 +0.7 2,127,503 + OHPLBJKB_02051 0.34 +0.2 2,127,504 - OHPLBJKB_02051 0.34 +0.4 2,127,504 - OHPLBJKB_02051 0.34 -0.1 2,127,525 + OHPLBJKB_02051 0.35 +2.4 2,127,526 - OHPLBJKB_02051 0.35 -2.0 2,127,557 + OHPLBJKB_02051 0.36 +0.5 2,127,557 + OHPLBJKB_02051 0.36 +3.4 2,127,630 - OHPLBJKB_02051 0.40 -0.7 2,127,645 - OHPLBJKB_02051 0.41 +0.8 2,127,649 - OHPLBJKB_02051 0.41 +0.0 2,127,649 - OHPLBJKB_02051 0.41 -0.6 2,127,649 - OHPLBJKB_02051 0.41 -0.4 2,127,650 + OHPLBJKB_02051 0.41 -0.4 2,127,651 - OHPLBJKB_02051 0.41 -0.4 2,127,687 + OHPLBJKB_02051 0.43 +0.7 2,127,687 + OHPLBJKB_02051 0.43 -0.5 2,127,688 - OHPLBJKB_02051 0.43 +1.2 2,127,688 - OHPLBJKB_02051 0.43 +0.4 2,127,731 + OHPLBJKB_02051 0.45 -1.3 2,127,731 + OHPLBJKB_02051 0.45 -2.1 2,127,731 + OHPLBJKB_02051 0.45 +0.0 2,127,731 + OHPLBJKB_02051 0.45 -0.6 2,127,732 - OHPLBJKB_02051 0.45 +0.5 2,127,789 - OHPLBJKB_02051 0.48 -0.1 2,127,878 + OHPLBJKB_02051 0.52 -1.7 2,127,916 + OHPLBJKB_02051 0.54 -0.7 2,127,916 + OHPLBJKB_02051 0.54 -1.2 2,127,923 + OHPLBJKB_02051 0.54 -1.2 2,127,924 - OHPLBJKB_02051 0.54 -0.7 2,127,924 - OHPLBJKB_02051 0.54 -0.4 2,127,927 + OHPLBJKB_02051 0.54 -1.0 2,127,927 + OHPLBJKB_02051 0.54 +2.2 2,127,928 - OHPLBJKB_02051 0.54 -1.7 2,127,928 - OHPLBJKB_02051 0.54 +0.7 2,127,950 + OHPLBJKB_02051 0.55 +1.0 2,127,950 + OHPLBJKB_02051 0.55 -1.5 2,127,951 - OHPLBJKB_02051 0.55 +0.0 2,127,951 - OHPLBJKB_02051 0.55 -1.4 2,127,954 + OHPLBJKB_02051 0.55 +0.5 2,127,955 - OHPLBJKB_02051 0.55 -0.9 2,127,955 - OHPLBJKB_02051 0.55 +0.2 2,128,002 + OHPLBJKB_02051 0.58 -1.1 2,128,066 - OHPLBJKB_02051 0.61 +1.2 2,128,116 + OHPLBJKB_02051 0.63 +0.9 2,128,116 + OHPLBJKB_02051 0.63 +2.4 2,128,117 - OHPLBJKB_02051 0.63 -0.3 2,128,117 - OHPLBJKB_02051 0.63 -0.4 2,128,153 - OHPLBJKB_02051 0.65 +1.9 2,128,245 - OHPLBJKB_02051 0.69 +0.2 2,128,245 - OHPLBJKB_02051 0.69 +1.2 2,128,250 + OHPLBJKB_02051 0.69 +0.6 2,128,250 + OHPLBJKB_02051 0.69 +0.0 2,128,250 + OHPLBJKB_02051 0.69 +1.4 2,128,250 + OHPLBJKB_02051 0.69 +0.7 2,128,250 + OHPLBJKB_02051 0.69 +0.1 2,128,250 + OHPLBJKB_02051 0.69 +0.0 2,128,250 + OHPLBJKB_02051 0.69 +1.0 2,128,250 + OHPLBJKB_02051 0.69 +1.2 2,128,250 + OHPLBJKB_02051 0.69 +0.7 2,128,250 + OHPLBJKB_02051 0.69 +1.3 2,128,251 - OHPLBJKB_02051 0.69 -0.9 2,128,251 - OHPLBJKB_02051 0.69 +2.2 2,128,251 - OHPLBJKB_02051 0.69 -1.3 2,128,251 - OHPLBJKB_02051 0.69 -1.8 2,128,251 - OHPLBJKB_02051 0.69 +0.1 2,128,251 - OHPLBJKB_02051 0.69 +1.3 2,128,277 + OHPLBJKB_02051 0.71 -1.4 2,128,278 - OHPLBJKB_02051 0.71 +1.4 2,128,292 + OHPLBJKB_02051 0.71 -0.6 2,128,380 + OHPLBJKB_02051 0.76 -0.9 2,128,407 - OHPLBJKB_02051 0.77 -0.6 2,128,410 + OHPLBJKB_02051 0.77 +1.1 2,128,411 - OHPLBJKB_02051 0.77 -0.3 2,128,411 - OHPLBJKB_02051 0.77 -0.7 2,128,415 + OHPLBJKB_02051 0.77 +2.1 2,128,415 + OHPLBJKB_02051 0.77 -2.1 2,128,416 - OHPLBJKB_02051 0.77 +1.0 2,128,464 - OHPLBJKB_02051 0.80 +1.7 2,128,588 + OHPLBJKB_02051 0.85 -1.4 2,128,607 + OHPLBJKB_02051 0.86 -2.1 2,128,608 - OHPLBJKB_02051 0.86 +1.0 2,128,652 + OHPLBJKB_02051 0.89 -2.0 2,128,776 + -1.0 2,128,850 + -0.6 2,128,851 - +0.8 2,128,851 - +0.7 2,128,851 - +1.3 2,128,879 + -0.9 2,128,879 + -0.1 2,128,880 - -1.4 2,128,880 - -0.4 2,129,145 - OHPLBJKB_02052 0.38 +1.1 2,129,145 - OHPLBJKB_02052 0.38 +1.4 2,129,177 + OHPLBJKB_02052 0.43 +0.8 2,129,178 - OHPLBJKB_02052 0.43 -1.6 2,129,200 - OHPLBJKB_02052 0.46 -0.7 2,129,203 - OHPLBJKB_02052 0.47 +0.4 2,129,205 + OHPLBJKB_02052 0.47 +1.8 2,129,206 - OHPLBJKB_02052 0.47 +0.0 2,129,206 - OHPLBJKB_02052 0.47 +1.8 2,129,313 + OHPLBJKB_02052 0.64 -0.6 2,129,314 - OHPLBJKB_02052 0.64 -0.7 2,129,325 + OHPLBJKB_02052 0.66 -0.9 2,129,356 - OHPLBJKB_02052 0.71 +1.4 2,129,358 + OHPLBJKB_02052 0.71 -0.6 2,129,358 + OHPLBJKB_02052 0.71 -0.8 2,129,358 + OHPLBJKB_02052 0.71 +0.1 2,129,359 - OHPLBJKB_02052 0.71 +0.7 2,129,359 - OHPLBJKB_02052 0.71 +0.4 2,129,359 - OHPLBJKB_02052 0.71 +0.0 2,129,359 - OHPLBJKB_02052 0.71 +0.1 2,129,425 + OHPLBJKB_02052 0.81 -1.7 2,129,426 - OHPLBJKB_02052 0.82 +0.3 2,129,457 + OHPLBJKB_02052 0.86 -0.6 2,129,457 + OHPLBJKB_02052 0.86 +0.3 2,129,457 + OHPLBJKB_02052 0.86 +0.9 2,129,458 - OHPLBJKB_02052 0.87 +1.5 2,129,478 - OHPLBJKB_02052 0.90 -1.0 2,129,496 + -1.1 2,129,497 - +0.7 2,129,503 + -1.1 2,129,504 - +0.2 2,129,600 + +1.8 2,129,757 - OHPLBJKB_02053 0.22 +2.8 2,129,819 - OHPLBJKB_02053 0.32 -0.3 2,129,859 + OHPLBJKB_02053 0.38 -0.6
Or see this region's nucleotide sequence