Experiment: Z3 MOI1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OHPLBJKB_00767 and OHPLBJKB_00768 are separated by 120 nucleotides OHPLBJKB_00768 and OHPLBJKB_00769 are separated by 6 nucleotides OHPLBJKB_00769 and OHPLBJKB_00770 overlap by 1 nucleotides OHPLBJKB_00770 and OHPLBJKB_00771 are separated by 36 nucleotides OHPLBJKB_00771 and OHPLBJKB_00772 are separated by 12 nucleotides
OHPLBJKB_00767: OHPLBJKB_00767 - IS110 family transposase IS621, at 788,110 to 789,090
_00767
OHPLBJKB_00768: OHPLBJKB_00768 - hypothetical protein, at 789,211 to 789,339
_00768
OHPLBJKB_00769: OHPLBJKB_00769 - Putative pre-16S rRNA nuclease, at 789,346 to 789,762
_00769
OHPLBJKB_00770: OHPLBJKB_00770 - hypothetical protein, at 789,762 to 790,397
_00770
OHPLBJKB_00771: OHPLBJKB_00771 - Glutathione synthetase, at 790,434 to 791,384
_00771
OHPLBJKB_00772: OHPLBJKB_00772 - Ribosomal RNA small subunit methyltransferase E, at 791,397 to 792,128
_00772
Position (kb) 789
790
791 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 789.187 kb on + strand at 789.193 kb on + strand at 789.193 kb on + strand at 789.197 kb on + strand at 789.197 kb on + strand at 789.197 kb on + strand at 789.208 kb on + strand at 789.208 kb on + strand at 789.208 kb on + strand at 789.209 kb on - strand at 789.237 kb on + strand, within OHPLBJKB_00768 at 789.246 kb on + strand, within OHPLBJKB_00768 at 789.247 kb on - strand, within OHPLBJKB_00768 at 789.247 kb on - strand, within OHPLBJKB_00768 at 789.337 kb on + strand at 789.338 kb on - strand at 789.347 kb on + strand at 789.955 kb on - strand, within OHPLBJKB_00770 at 790.239 kb on - strand, within OHPLBJKB_00770 at 790.239 kb on - strand, within OHPLBJKB_00770 at 790.239 kb on - strand, within OHPLBJKB_00770 at 790.302 kb on - strand, within OHPLBJKB_00770 at 790.318 kb on - strand, within OHPLBJKB_00770 at 790.372 kb on - strand at 790.425 kb on + strand at 790.425 kb on + strand at 790.436 kb on - strand at 790.517 kb on + strand at 790.723 kb on + strand, within OHPLBJKB_00771 at 790.907 kb on + strand, within OHPLBJKB_00771 at 790.908 kb on - strand, within OHPLBJKB_00771 at 790.908 kb on - strand, within OHPLBJKB_00771 at 790.908 kb on - strand, within OHPLBJKB_00771 at 790.945 kb on - strand, within OHPLBJKB_00771 at 790.955 kb on + strand, within OHPLBJKB_00771 at 790.956 kb on - strand, within OHPLBJKB_00771 at 791.084 kb on + strand, within OHPLBJKB_00771 at 791.084 kb on + strand, within OHPLBJKB_00771 at 791.086 kb on + strand, within OHPLBJKB_00771 at 791.086 kb on + strand, within OHPLBJKB_00771 at 791.087 kb on - strand, within OHPLBJKB_00771 at 791.096 kb on - strand, within OHPLBJKB_00771 at 791.126 kb on + strand, within OHPLBJKB_00771 at 791.197 kb on + strand, within OHPLBJKB_00771 at 791.197 kb on + strand, within OHPLBJKB_00771 at 791.198 kb on - strand, within OHPLBJKB_00771 at 791.254 kb on + strand, within OHPLBJKB_00771 at 791.273 kb on + strand, within OHPLBJKB_00771 at 791.274 kb on - strand, within OHPLBJKB_00771 at 791.274 kb on - strand, within OHPLBJKB_00771 at 791.275 kb on + strand, within OHPLBJKB_00771 at 791.275 kb on + strand, within OHPLBJKB_00771 at 791.275 kb on + strand, within OHPLBJKB_00771 at 791.275 kb on + strand, within OHPLBJKB_00771 at 791.276 kb on - strand, within OHPLBJKB_00771 at 791.276 kb on - strand, within OHPLBJKB_00771 at 791.386 kb on - strand at 791.386 kb on - strand at 791.386 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Z3 MOI1 remove 789,187 + +0.1 789,193 + -1.9 789,193 + -2.0 789,197 + +0.4 789,197 + +0.2 789,197 + -0.2 789,208 + +1.7 789,208 + -2.8 789,208 + -2.2 789,209 - -2.4 789,237 + OHPLBJKB_00768 0.20 -1.8 789,246 + OHPLBJKB_00768 0.27 -3.1 789,247 - OHPLBJKB_00768 0.28 +0.6 789,247 - OHPLBJKB_00768 0.28 +1.8 789,337 + -0.3 789,338 - +1.4 789,347 + +1.3 789,955 - OHPLBJKB_00770 0.30 +1.1 790,239 - OHPLBJKB_00770 0.75 -2.2 790,239 - OHPLBJKB_00770 0.75 +0.6 790,239 - OHPLBJKB_00770 0.75 +1.4 790,302 - OHPLBJKB_00770 0.85 -0.8 790,318 - OHPLBJKB_00770 0.87 -1.0 790,372 - -0.4 790,425 + -0.2 790,425 + -1.4 790,436 - -1.6 790,517 + +2.0 790,723 + OHPLBJKB_00771 0.30 +1.2 790,907 + OHPLBJKB_00771 0.50 +2.1 790,908 - OHPLBJKB_00771 0.50 -0.2 790,908 - OHPLBJKB_00771 0.50 +2.0 790,908 - OHPLBJKB_00771 0.50 +1.6 790,945 - OHPLBJKB_00771 0.54 -1.0 790,955 + OHPLBJKB_00771 0.55 +1.0 790,956 - OHPLBJKB_00771 0.55 +2.3 791,084 + OHPLBJKB_00771 0.68 -0.7 791,084 + OHPLBJKB_00771 0.68 +2.0 791,086 + OHPLBJKB_00771 0.69 +0.9 791,086 + OHPLBJKB_00771 0.69 +1.7 791,087 - OHPLBJKB_00771 0.69 -0.7 791,096 - OHPLBJKB_00771 0.70 +3.3 791,126 + OHPLBJKB_00771 0.73 +1.6 791,197 + OHPLBJKB_00771 0.80 +0.4 791,197 + OHPLBJKB_00771 0.80 +0.4 791,198 - OHPLBJKB_00771 0.80 -0.0 791,254 + OHPLBJKB_00771 0.86 +1.6 791,273 + OHPLBJKB_00771 0.88 +2.0 791,274 - OHPLBJKB_00771 0.88 +0.7 791,274 - OHPLBJKB_00771 0.88 +1.7 791,275 + OHPLBJKB_00771 0.88 -0.7 791,275 + OHPLBJKB_00771 0.88 -0.0 791,275 + OHPLBJKB_00771 0.88 +2.0 791,275 + OHPLBJKB_00771 0.88 +2.7 791,276 - OHPLBJKB_00771 0.89 +1.0 791,276 - OHPLBJKB_00771 0.89 -0.0 791,386 - -0.2 791,386 - -1.1 791,386 - -1.8
Or see this region's nucleotide sequence