Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_00107

Experiment: Z3 MOI1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_00106 and OHPLBJKB_00107 are separated by 11 nucleotidesOHPLBJKB_00107 and OHPLBJKB_00108 are separated by 47 nucleotidesOHPLBJKB_00108 and OHPLBJKB_00109 are separated by 20 nucleotides OHPLBJKB_00106: OHPLBJKB_00106 - hypothetical protein, at 115,732 to 116,193 _00106 OHPLBJKB_00107: OHPLBJKB_00107 - hypothetical protein, at 116,205 to 117,143 _00107 OHPLBJKB_00108: OHPLBJKB_00108 - Protein YibA, at 117,191 to 118,033 _00108 OHPLBJKB_00109: OHPLBJKB_00109 - hypothetical protein, at 118,054 to 119,142 _00109 Position (kb) 116 117 118Strain fitness (log2 ratio) -2 -1 0 1 2at 115.258 kb on + strandat 115.367 kb on - strandat 115.394 kb on - strandat 115.489 kb on - strandat 115.633 kb on - strandat 115.667 kb on + strandat 115.667 kb on + strandat 115.671 kb on + strandat 115.671 kb on + strandat 115.673 kb on + strandat 115.673 kb on + strandat 115.674 kb on - strandat 115.674 kb on - strandat 115.676 kb on + strandat 115.677 kb on - strandat 115.677 kb on - strandat 115.697 kb on + strandat 115.697 kb on + strandat 115.697 kb on + strandat 115.698 kb on - strandat 115.701 kb on - strandat 115.701 kb on - strandat 115.725 kb on - strandat 116.003 kb on + strand, within OHPLBJKB_00106at 116.206 kb on + strandat 116.243 kb on + strandat 116.307 kb on - strand, within OHPLBJKB_00107at 116.307 kb on - strand, within OHPLBJKB_00107at 116.372 kb on + strand, within OHPLBJKB_00107at 116.372 kb on + strand, within OHPLBJKB_00107at 116.430 kb on - strand, within OHPLBJKB_00107at 116.542 kb on + strand, within OHPLBJKB_00107at 116.548 kb on - strand, within OHPLBJKB_00107at 116.589 kb on - strand, within OHPLBJKB_00107at 116.634 kb on - strand, within OHPLBJKB_00107at 116.636 kb on + strand, within OHPLBJKB_00107at 116.649 kb on + strand, within OHPLBJKB_00107at 116.661 kb on - strand, within OHPLBJKB_00107at 116.686 kb on - strand, within OHPLBJKB_00107at 116.709 kb on + strand, within OHPLBJKB_00107at 116.715 kb on + strand, within OHPLBJKB_00107at 116.741 kb on - strand, within OHPLBJKB_00107at 116.848 kb on + strand, within OHPLBJKB_00107at 116.926 kb on + strand, within OHPLBJKB_00107at 116.926 kb on + strand, within OHPLBJKB_00107at 117.179 kb on - strandat 117.256 kb on + strandat 117.256 kb on + strandat 117.256 kb on + strandat 117.256 kb on + strandat 117.256 kb on + strandat 117.257 kb on - strandat 117.259 kb on + strandat 117.259 kb on + strandat 117.263 kb on + strandat 117.263 kb on + strandat 117.472 kb on - strand, within OHPLBJKB_00108at 117.608 kb on - strand, within OHPLBJKB_00108

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Per-strain Table

Position Strand Gene LocusTag Fraction Z3 MOI1
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115,258 + +0.2
115,367 - -1.8
115,394 - -0.3
115,489 - -1.6
115,633 - +0.4
115,667 + -2.1
115,667 + +0.4
115,671 + -1.3
115,671 + -1.6
115,673 + -1.1
115,673 + +0.9
115,674 - -2.0
115,674 - -1.8
115,676 + -1.1
115,677 - -1.6
115,677 - +1.9
115,697 + +2.0
115,697 + -1.3
115,697 + +0.1
115,698 - -2.4
115,701 - +1.3
115,701 - -1.6
115,725 - -2.6
116,003 + OHPLBJKB_00106 0.59 +0.7
116,206 + -2.3
116,243 + -1.8
116,307 - OHPLBJKB_00107 0.11 +0.3
116,307 - OHPLBJKB_00107 0.11 -0.0
116,372 + OHPLBJKB_00107 0.18 +0.7
116,372 + OHPLBJKB_00107 0.18 +1.0
116,430 - OHPLBJKB_00107 0.24 -0.9
116,542 + OHPLBJKB_00107 0.36 +1.4
116,548 - OHPLBJKB_00107 0.37 +0.2
116,589 - OHPLBJKB_00107 0.41 -0.5
116,634 - OHPLBJKB_00107 0.46 +1.7
116,636 + OHPLBJKB_00107 0.46 -0.4
116,649 + OHPLBJKB_00107 0.47 -0.1
116,661 - OHPLBJKB_00107 0.49 -1.5
116,686 - OHPLBJKB_00107 0.51 -1.7
116,709 + OHPLBJKB_00107 0.54 +2.6
116,715 + OHPLBJKB_00107 0.54 +0.3
116,741 - OHPLBJKB_00107 0.57 -1.8
116,848 + OHPLBJKB_00107 0.68 -1.4
116,926 + OHPLBJKB_00107 0.77 +0.3
116,926 + OHPLBJKB_00107 0.77 +2.5
117,179 - -1.9
117,256 + -1.2
117,256 + +1.7
117,256 + -1.7
117,256 + -0.6
117,256 + -0.2
117,257 - +1.2
117,259 + -0.7
117,259 + -1.1
117,263 + -1.2
117,263 + +2.7
117,472 - OHPLBJKB_00108 0.33 +0.6
117,608 - OHPLBJKB_00108 0.49 -1.2

Or see this region's nucleotide sequence