Strain Fitness in Escherichia coli ECOR27 around NOLOHH_18835

Experiment: TP2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntlsrK and ydeU are separated by 530 nucleotidesydeU and NOLOHH_18840 are separated by 27 nucleotidesNOLOHH_18840 and hipB are separated by 88 nucleotideshipB and hipA overlap by 1 nucleotides NOLOHH_18830: lsrK - autoinducer-2 kinase, at 3,684,868 to 3,686,460 lsrK NOLOHH_18835: ydeU - ECSE_1600 family autotransporter, at 3,686,991 to 3,692,411 ydeU NOLOHH_18840: NOLOHH_18840 - hypothetical protein, at 3,692,439 to 3,692,531 _18840 NOLOHH_18845: hipB - type II toxin-antitoxin system antitoxin HipB, at 3,692,620 to 3,692,886 hipB NOLOHH_18850: hipA - type II toxin-antitoxin system serine/threonine protein kinase toxin HipA, at 3,692,886 to 3,694,208 hipA Position (kb) 3686 3687 3688 3689 3690 3691 3692 3693Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3686.005 kb on - strand, within lsrKat 3688.034 kb on + strand, within ydeUat 3688.090 kb on + strand, within ydeUat 3688.154 kb on + strand, within ydeUat 3688.335 kb on + strand, within ydeUat 3688.335 kb on + strand, within ydeUat 3688.337 kb on + strand, within ydeUat 3688.544 kb on + strand, within ydeUat 3688.598 kb on + strand, within ydeUat 3688.640 kb on + strand, within ydeUat 3688.640 kb on + strand, within ydeUat 3688.672 kb on + strand, within ydeUat 3688.712 kb on + strand, within ydeUat 3688.806 kb on + strand, within ydeUat 3688.806 kb on + strand, within ydeUat 3688.829 kb on + strand, within ydeUat 3688.885 kb on + strand, within ydeUat 3689.021 kb on + strand, within ydeUat 3689.027 kb on + strand, within ydeUat 3689.027 kb on + strand, within ydeUat 3689.129 kb on + strand, within ydeUat 3689.133 kb on + strand, within ydeUat 3689.134 kb on - strand, within ydeUat 3689.142 kb on - strand, within ydeUat 3689.280 kb on + strand, within ydeUat 3689.583 kb on + strand, within ydeUat 3689.585 kb on + strand, within ydeUat 3689.585 kb on + strand, within ydeUat 3689.585 kb on + strand, within ydeUat 3689.585 kb on + strand, within ydeUat 3689.815 kb on + strand, within ydeUat 3689.815 kb on + strand, within ydeUat 3689.898 kb on + strand, within ydeUat 3689.937 kb on + strand, within ydeUat 3689.937 kb on + strand, within ydeUat 3690.071 kb on + strand, within ydeUat 3690.071 kb on + strand, within ydeUat 3690.126 kb on + strand, within ydeUat 3690.126 kb on + strand, within ydeUat 3690.126 kb on + strand, within ydeUat 3690.145 kb on + strand, within ydeUat 3690.145 kb on + strand, within ydeUat 3690.145 kb on + strand, within ydeUat 3690.218 kb on + strand, within ydeUat 3690.302 kb on + strand, within ydeUat 3690.443 kb on + strand, within ydeUat 3690.521 kb on + strand, within ydeUat 3690.568 kb on + strand, within ydeUat 3690.707 kb on + strand, within ydeUat 3690.779 kb on + strand, within ydeUat 3690.798 kb on + strand, within ydeUat 3690.857 kb on + strand, within ydeUat 3690.860 kb on + strand, within ydeUat 3690.878 kb on + strand, within ydeUat 3690.881 kb on + strand, within ydeUat 3690.965 kb on + strand, within ydeUat 3691.062 kb on + strand, within ydeUat 3691.178 kb on + strand, within ydeUat 3691.250 kb on + strand, within ydeUat 3691.524 kb on + strand, within ydeUat 3691.525 kb on - strand, within ydeUat 3691.528 kb on + strand, within ydeUat 3691.528 kb on + strand, within ydeUat 3691.528 kb on + strand, within ydeUat 3691.528 kb on + strand, within ydeUat 3691.562 kb on + strand, within ydeUat 3691.562 kb on + strand, within ydeUat 3691.562 kb on + strand, within ydeUat 3691.562 kb on + strand, within ydeUat 3691.866 kb on + strand, within ydeUat 3691.917 kb on + strandat 3691.956 kb on + strandat 3692.287 kb on + strandat 3692.311 kb on + strandat 3692.353 kb on + strandat 3692.400 kb on + strandat 3692.400 kb on + strandat 3692.614 kb on + strandat 3692.614 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction TP2
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3,686,005 - lsrK NOLOHH_18830 0.71 +0.7
3,688,034 + ydeU NOLOHH_18835 0.19 -0.9
3,688,090 + ydeU NOLOHH_18835 0.20 +0.7
3,688,154 + ydeU NOLOHH_18835 0.21 -0.9
3,688,335 + ydeU NOLOHH_18835 0.25 -0.0
3,688,335 + ydeU NOLOHH_18835 0.25 -0.9
3,688,337 + ydeU NOLOHH_18835 0.25 +0.7
3,688,544 + ydeU NOLOHH_18835 0.29 +0.7
3,688,598 + ydeU NOLOHH_18835 0.30 +1.7
3,688,640 + ydeU NOLOHH_18835 0.30 -0.3
3,688,640 + ydeU NOLOHH_18835 0.30 -1.6
3,688,672 + ydeU NOLOHH_18835 0.31 +1.0
3,688,712 + ydeU NOLOHH_18835 0.32 +0.7
3,688,806 + ydeU NOLOHH_18835 0.33 -0.0
3,688,806 + ydeU NOLOHH_18835 0.33 +0.7
3,688,829 + ydeU NOLOHH_18835 0.34 +2.3
3,688,885 + ydeU NOLOHH_18835 0.35 +0.7
3,689,021 + ydeU NOLOHH_18835 0.37 -0.3
3,689,027 + ydeU NOLOHH_18835 0.38 +2.9
3,689,027 + ydeU NOLOHH_18835 0.38 +0.7
3,689,129 + ydeU NOLOHH_18835 0.39 +0.7
3,689,133 + ydeU NOLOHH_18835 0.40 -0.6
3,689,134 - ydeU NOLOHH_18835 0.40 +0.7
3,689,142 - ydeU NOLOHH_18835 0.40 -1.9
3,689,280 + ydeU NOLOHH_18835 0.42 -0.3
3,689,583 + ydeU NOLOHH_18835 0.48 +3.5
3,689,585 + ydeU NOLOHH_18835 0.48 +0.7
3,689,585 + ydeU NOLOHH_18835 0.48 +0.7
3,689,585 + ydeU NOLOHH_18835 0.48 +0.7
3,689,585 + ydeU NOLOHH_18835 0.48 +0.0
3,689,815 + ydeU NOLOHH_18835 0.52 -0.7
3,689,815 + ydeU NOLOHH_18835 0.52 -0.5
3,689,898 + ydeU NOLOHH_18835 0.54 +0.4
3,689,937 + ydeU NOLOHH_18835 0.54 +0.3
3,689,937 + ydeU NOLOHH_18835 0.54 -0.3
3,690,071 + ydeU NOLOHH_18835 0.57 -0.5
3,690,071 + ydeU NOLOHH_18835 0.57 +1.0
3,690,126 + ydeU NOLOHH_18835 0.58 +0.5
3,690,126 + ydeU NOLOHH_18835 0.58 -1.3
3,690,126 + ydeU NOLOHH_18835 0.58 -0.9
3,690,145 + ydeU NOLOHH_18835 0.58 +2.1
3,690,145 + ydeU NOLOHH_18835 0.58 -1.3
3,690,145 + ydeU NOLOHH_18835 0.58 +0.2
3,690,218 + ydeU NOLOHH_18835 0.60 +0.7
3,690,302 + ydeU NOLOHH_18835 0.61 -0.3
3,690,443 + ydeU NOLOHH_18835 0.64 -0.3
3,690,521 + ydeU NOLOHH_18835 0.65 +1.0
3,690,568 + ydeU NOLOHH_18835 0.66 +1.3
3,690,707 + ydeU NOLOHH_18835 0.69 -2.8
3,690,779 + ydeU NOLOHH_18835 0.70 -0.3
3,690,798 + ydeU NOLOHH_18835 0.70 +3.3
3,690,857 + ydeU NOLOHH_18835 0.71 -1.4
3,690,860 + ydeU NOLOHH_18835 0.71 -0.3
3,690,878 + ydeU NOLOHH_18835 0.72 +0.5
3,690,881 + ydeU NOLOHH_18835 0.72 -0.9
3,690,965 + ydeU NOLOHH_18835 0.73 -0.0
3,691,062 + ydeU NOLOHH_18835 0.75 +2.0
3,691,178 + ydeU NOLOHH_18835 0.77 -1.0
3,691,250 + ydeU NOLOHH_18835 0.79 -0.9
3,691,524 + ydeU NOLOHH_18835 0.84 +2.7
3,691,525 - ydeU NOLOHH_18835 0.84 +0.7
3,691,528 + ydeU NOLOHH_18835 0.84 -0.3
3,691,528 + ydeU NOLOHH_18835 0.84 -2.1
3,691,528 + ydeU NOLOHH_18835 0.84 -1.3
3,691,528 + ydeU NOLOHH_18835 0.84 +0.7
3,691,562 + ydeU NOLOHH_18835 0.84 -0.9
3,691,562 + ydeU NOLOHH_18835 0.84 -0.9
3,691,562 + ydeU NOLOHH_18835 0.84 +0.3
3,691,562 + ydeU NOLOHH_18835 0.84 -1.3
3,691,866 + ydeU NOLOHH_18835 0.90 -0.3
3,691,917 + -0.9
3,691,956 + -0.3
3,692,287 + +0.9
3,692,311 + +0.7
3,692,353 + +0.7
3,692,400 + -0.3
3,692,400 + +0.7
3,692,614 + +1.7
3,692,614 + +0.1

Or see this region's nucleotide sequence