Experiment: TP2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt lsrK and ydeU are separated by 530 nucleotides ydeU and NOLOHH_18840 are separated by 27 nucleotides NOLOHH_18840 and hipB are separated by 88 nucleotides hipB and hipA overlap by 1 nucleotides
NOLOHH_18830: lsrK - autoinducer-2 kinase, at 3,684,868 to 3,686,460
lsrK
NOLOHH_18835: ydeU - ECSE_1600 family autotransporter, at 3,686,991 to 3,692,411
ydeU
NOLOHH_18840: NOLOHH_18840 - hypothetical protein, at 3,692,439 to 3,692,531
_18840
NOLOHH_18845: hipB - type II toxin-antitoxin system antitoxin HipB, at 3,692,620 to 3,692,886
hipB
NOLOHH_18850: hipA - type II toxin-antitoxin system serine/threonine protein kinase toxin HipA, at 3,692,886 to 3,694,208
hipA
Position (kb)
3686
3687
3688
3689
3690
3691
3692
3693 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3686.005 kb on - strand, within lsrK at 3688.034 kb on + strand, within ydeU at 3688.090 kb on + strand, within ydeU at 3688.154 kb on + strand, within ydeU at 3688.335 kb on + strand, within ydeU at 3688.335 kb on + strand, within ydeU at 3688.337 kb on + strand, within ydeU at 3688.544 kb on + strand, within ydeU at 3688.598 kb on + strand, within ydeU at 3688.640 kb on + strand, within ydeU at 3688.640 kb on + strand, within ydeU at 3688.672 kb on + strand, within ydeU at 3688.712 kb on + strand, within ydeU at 3688.806 kb on + strand, within ydeU at 3688.806 kb on + strand, within ydeU at 3688.829 kb on + strand, within ydeU at 3688.885 kb on + strand, within ydeU at 3689.021 kb on + strand, within ydeU at 3689.027 kb on + strand, within ydeU at 3689.027 kb on + strand, within ydeU at 3689.129 kb on + strand, within ydeU at 3689.133 kb on + strand, within ydeU at 3689.134 kb on - strand, within ydeU at 3689.142 kb on - strand, within ydeU at 3689.280 kb on + strand, within ydeU at 3689.583 kb on + strand, within ydeU at 3689.585 kb on + strand, within ydeU at 3689.585 kb on + strand, within ydeU at 3689.585 kb on + strand, within ydeU at 3689.585 kb on + strand, within ydeU at 3689.815 kb on + strand, within ydeU at 3689.815 kb on + strand, within ydeU at 3689.898 kb on + strand, within ydeU at 3689.937 kb on + strand, within ydeU at 3689.937 kb on + strand, within ydeU at 3690.071 kb on + strand, within ydeU at 3690.071 kb on + strand, within ydeU at 3690.126 kb on + strand, within ydeU at 3690.126 kb on + strand, within ydeU at 3690.126 kb on + strand, within ydeU at 3690.145 kb on + strand, within ydeU at 3690.145 kb on + strand, within ydeU at 3690.145 kb on + strand, within ydeU at 3690.218 kb on + strand, within ydeU at 3690.302 kb on + strand, within ydeU at 3690.443 kb on + strand, within ydeU at 3690.521 kb on + strand, within ydeU at 3690.568 kb on + strand, within ydeU at 3690.707 kb on + strand, within ydeU at 3690.779 kb on + strand, within ydeU at 3690.798 kb on + strand, within ydeU at 3690.857 kb on + strand, within ydeU at 3690.860 kb on + strand, within ydeU at 3690.878 kb on + strand, within ydeU at 3690.881 kb on + strand, within ydeU at 3690.965 kb on + strand, within ydeU at 3691.062 kb on + strand, within ydeU at 3691.178 kb on + strand, within ydeU at 3691.250 kb on + strand, within ydeU at 3691.524 kb on + strand, within ydeU at 3691.525 kb on - strand, within ydeU at 3691.528 kb on + strand, within ydeU at 3691.528 kb on + strand, within ydeU at 3691.528 kb on + strand, within ydeU at 3691.528 kb on + strand, within ydeU at 3691.562 kb on + strand, within ydeU at 3691.562 kb on + strand, within ydeU at 3691.562 kb on + strand, within ydeU at 3691.562 kb on + strand, within ydeU at 3691.866 kb on + strand, within ydeU at 3691.917 kb on + strand at 3691.956 kb on + strand at 3692.287 kb on + strand at 3692.311 kb on + strand at 3692.353 kb on + strand at 3692.400 kb on + strand at 3692.400 kb on + strand at 3692.614 kb on + strand at 3692.614 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction TP2 remove 3,686,005 - lsrK NOLOHH_18830 0.71 +0.7 3,688,034 + ydeU NOLOHH_18835 0.19 -0.9 3,688,090 + ydeU NOLOHH_18835 0.20 +0.7 3,688,154 + ydeU NOLOHH_18835 0.21 -0.9 3,688,335 + ydeU NOLOHH_18835 0.25 -0.0 3,688,335 + ydeU NOLOHH_18835 0.25 -0.9 3,688,337 + ydeU NOLOHH_18835 0.25 +0.7 3,688,544 + ydeU NOLOHH_18835 0.29 +0.7 3,688,598 + ydeU NOLOHH_18835 0.30 +1.7 3,688,640 + ydeU NOLOHH_18835 0.30 -0.3 3,688,640 + ydeU NOLOHH_18835 0.30 -1.6 3,688,672 + ydeU NOLOHH_18835 0.31 +1.0 3,688,712 + ydeU NOLOHH_18835 0.32 +0.7 3,688,806 + ydeU NOLOHH_18835 0.33 -0.0 3,688,806 + ydeU NOLOHH_18835 0.33 +0.7 3,688,829 + ydeU NOLOHH_18835 0.34 +2.3 3,688,885 + ydeU NOLOHH_18835 0.35 +0.7 3,689,021 + ydeU NOLOHH_18835 0.37 -0.3 3,689,027 + ydeU NOLOHH_18835 0.38 +2.9 3,689,027 + ydeU NOLOHH_18835 0.38 +0.7 3,689,129 + ydeU NOLOHH_18835 0.39 +0.7 3,689,133 + ydeU NOLOHH_18835 0.40 -0.6 3,689,134 - ydeU NOLOHH_18835 0.40 +0.7 3,689,142 - ydeU NOLOHH_18835 0.40 -1.9 3,689,280 + ydeU NOLOHH_18835 0.42 -0.3 3,689,583 + ydeU NOLOHH_18835 0.48 +3.5 3,689,585 + ydeU NOLOHH_18835 0.48 +0.7 3,689,585 + ydeU NOLOHH_18835 0.48 +0.7 3,689,585 + ydeU NOLOHH_18835 0.48 +0.7 3,689,585 + ydeU NOLOHH_18835 0.48 +0.0 3,689,815 + ydeU NOLOHH_18835 0.52 -0.7 3,689,815 + ydeU NOLOHH_18835 0.52 -0.5 3,689,898 + ydeU NOLOHH_18835 0.54 +0.4 3,689,937 + ydeU NOLOHH_18835 0.54 +0.3 3,689,937 + ydeU NOLOHH_18835 0.54 -0.3 3,690,071 + ydeU NOLOHH_18835 0.57 -0.5 3,690,071 + ydeU NOLOHH_18835 0.57 +1.0 3,690,126 + ydeU NOLOHH_18835 0.58 +0.5 3,690,126 + ydeU NOLOHH_18835 0.58 -1.3 3,690,126 + ydeU NOLOHH_18835 0.58 -0.9 3,690,145 + ydeU NOLOHH_18835 0.58 +2.1 3,690,145 + ydeU NOLOHH_18835 0.58 -1.3 3,690,145 + ydeU NOLOHH_18835 0.58 +0.2 3,690,218 + ydeU NOLOHH_18835 0.60 +0.7 3,690,302 + ydeU NOLOHH_18835 0.61 -0.3 3,690,443 + ydeU NOLOHH_18835 0.64 -0.3 3,690,521 + ydeU NOLOHH_18835 0.65 +1.0 3,690,568 + ydeU NOLOHH_18835 0.66 +1.3 3,690,707 + ydeU NOLOHH_18835 0.69 -2.8 3,690,779 + ydeU NOLOHH_18835 0.70 -0.3 3,690,798 + ydeU NOLOHH_18835 0.70 +3.3 3,690,857 + ydeU NOLOHH_18835 0.71 -1.4 3,690,860 + ydeU NOLOHH_18835 0.71 -0.3 3,690,878 + ydeU NOLOHH_18835 0.72 +0.5 3,690,881 + ydeU NOLOHH_18835 0.72 -0.9 3,690,965 + ydeU NOLOHH_18835 0.73 -0.0 3,691,062 + ydeU NOLOHH_18835 0.75 +2.0 3,691,178 + ydeU NOLOHH_18835 0.77 -1.0 3,691,250 + ydeU NOLOHH_18835 0.79 -0.9 3,691,524 + ydeU NOLOHH_18835 0.84 +2.7 3,691,525 - ydeU NOLOHH_18835 0.84 +0.7 3,691,528 + ydeU NOLOHH_18835 0.84 -0.3 3,691,528 + ydeU NOLOHH_18835 0.84 -2.1 3,691,528 + ydeU NOLOHH_18835 0.84 -1.3 3,691,528 + ydeU NOLOHH_18835 0.84 +0.7 3,691,562 + ydeU NOLOHH_18835 0.84 -0.9 3,691,562 + ydeU NOLOHH_18835 0.84 -0.9 3,691,562 + ydeU NOLOHH_18835 0.84 +0.3 3,691,562 + ydeU NOLOHH_18835 0.84 -1.3 3,691,866 + ydeU NOLOHH_18835 0.90 -0.3 3,691,917 + -0.9 3,691,956 + -0.3 3,692,287 + +0.9 3,692,311 + +0.7 3,692,353 + +0.7 3,692,400 + -0.3 3,692,400 + +0.7 3,692,614 + +1.7 3,692,614 + +0.1
Or see this region's nucleotide sequence