Strain Fitness in Escherichia coli ECOR27 around NOLOHH_18545

Experiment: TP2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntNOLOHH_18535 and NOLOHH_18540 are separated by 7 nucleotidesNOLOHH_18540 and NOLOHH_18545 are separated by 15 nucleotidesNOLOHH_18545 and NOLOHH_18550 overlap by 19 nucleotidesNOLOHH_18550 and NOLOHH_18555 overlap by 8 nucleotidesNOLOHH_18555 and NOLOHH_18560 overlap by 4 nucleotides NOLOHH_18535: NOLOHH_18535 - Tail tube terminator protein, at 3,629,473 to 3,629,868 _18535 NOLOHH_18540: NOLOHH_18540 - Tail tube protein, at 3,629,876 to 3,630,616 _18540 NOLOHH_18545: NOLOHH_18545 - phage minor tail protein G, at 3,630,632 to 3,631,054 _18545 NOLOHH_18550: NOLOHH_18550 - phage tail assembly protein T, at 3,631,036 to 3,631,470 _18550 NOLOHH_18555: NOLOHH_18555 - Tail component of prophage CP-933X, at 3,631,463 to 3,631,762 _18555 NOLOHH_18560: NOLOHH_18560 - Phage-related minor tail protein, at 3,631,759 to 3,634,023 _18560 Position (kb) 3630 3631 3632Strain fitness (log2 ratio) -2 -1 0 1 2at 3629.854 kb on - strandat 3629.854 kb on - strandat 3629.854 kb on - strandat 3629.857 kb on + strandat 3630.038 kb on + strand, within NOLOHH_18540at 3630.050 kb on + strand, within NOLOHH_18540at 3630.050 kb on + strand, within NOLOHH_18540at 3630.050 kb on + strand, within NOLOHH_18540at 3630.050 kb on + strand, within NOLOHH_18540at 3630.829 kb on + strand, within NOLOHH_18545at 3630.958 kb on + strand, within NOLOHH_18545at 3630.962 kb on + strand, within NOLOHH_18545at 3630.962 kb on + strand, within NOLOHH_18545at 3631.672 kb on + strand, within NOLOHH_18555at 3631.672 kb on + strand, within NOLOHH_18555at 3631.672 kb on + strand, within NOLOHH_18555at 3631.672 kb on + strand, within NOLOHH_18555

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Per-strain Table

Position Strand Gene LocusTag Fraction TP2
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3,629,854 - +0.7
3,629,854 - +0.7
3,629,854 - -0.3
3,629,857 + -0.5
3,630,038 + NOLOHH_18540 0.22 +1.0
3,630,050 + NOLOHH_18540 0.23 +1.3
3,630,050 + NOLOHH_18540 0.23 +1.7
3,630,050 + NOLOHH_18540 0.23 +2.3
3,630,050 + NOLOHH_18540 0.23 +0.7
3,630,829 + NOLOHH_18545 0.47 +1.1
3,630,958 + NOLOHH_18545 0.77 +0.1
3,630,962 + NOLOHH_18545 0.78 -1.9
3,630,962 + NOLOHH_18545 0.78 -0.9
3,631,672 + NOLOHH_18555 0.70 +0.4
3,631,672 + NOLOHH_18555 0.70 +0.1
3,631,672 + NOLOHH_18555 0.70 -2.5
3,631,672 + NOLOHH_18555 0.70 -0.9

Or see this region's nucleotide sequence