Experiment: TP2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt alsB and alsA are separated by 126 nucleotides alsA and alsC overlap by 22 nucleotides alsC and alsE are separated by 10 nucleotides
NOLOHH_04975: alsB - D-allose transporter substrate-binding protein, at 907,077 to 908,012
alsB
NOLOHH_04980: alsA - D-allose ABC transporter ATP-binding protein AlsA, at 908,139 to 909,671
alsA
NOLOHH_04985: alsC - D-allose ABC transporter permease, at 909,650 to 910,630
alsC
NOLOHH_04990: alsE - D-allulose-6-phosphate 3-epimerase, at 910,641 to 911,336
alsE
Position (kb) 908
909
910 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 907.165 kb on + strand at 907.401 kb on + strand, within alsB at 907.402 kb on - strand, within alsB at 907.485 kb on - strand, within alsB at 907.521 kb on - strand, within alsB at 907.569 kb on - strand, within alsB at 907.679 kb on + strand, within alsB at 907.715 kb on + strand, within alsB at 907.737 kb on + strand, within alsB at 907.738 kb on - strand, within alsB at 907.807 kb on + strand, within alsB at 907.952 kb on + strand at 908.094 kb on + strand at 908.151 kb on + strand at 908.154 kb on - strand at 908.340 kb on - strand, within alsA at 908.576 kb on - strand, within alsA at 908.685 kb on + strand, within alsA at 908.686 kb on - strand, within alsA at 908.686 kb on - strand, within alsA at 908.736 kb on + strand, within alsA at 908.736 kb on + strand, within alsA at 908.737 kb on - strand, within alsA at 908.738 kb on + strand, within alsA at 908.739 kb on - strand, within alsA at 908.739 kb on - strand, within alsA at 908.739 kb on - strand, within alsA at 908.739 kb on - strand, within alsA at 908.781 kb on + strand, within alsA at 908.783 kb on + strand, within alsA at 908.784 kb on - strand, within alsA at 908.863 kb on + strand, within alsA at 908.991 kb on - strand, within alsA at 908.991 kb on - strand, within alsA at 909.010 kb on + strand, within alsA at 909.044 kb on + strand, within alsA at 909.045 kb on - strand, within alsA at 909.045 kb on - strand, within alsA at 909.045 kb on - strand, within alsA at 909.045 kb on - strand, within alsA at 909.105 kb on - strand, within alsA at 909.116 kb on + strand, within alsA at 909.117 kb on - strand, within alsA at 909.162 kb on + strand, within alsA at 909.162 kb on + strand, within alsA at 909.162 kb on + strand, within alsA at 909.162 kb on + strand, within alsA at 909.162 kb on + strand, within alsA at 909.162 kb on + strand, within alsA at 909.162 kb on + strand, within alsA at 909.163 kb on - strand, within alsA at 909.163 kb on - strand, within alsA at 909.163 kb on - strand, within alsA at 909.163 kb on - strand, within alsA at 909.163 kb on - strand, within alsA at 909.163 kb on - strand, within alsA at 909.163 kb on - strand, within alsA at 909.256 kb on - strand, within alsA at 909.257 kb on + strand, within alsA at 909.356 kb on + strand, within alsA at 909.357 kb on - strand, within alsA at 909.432 kb on - strand, within alsA at 909.484 kb on - strand, within alsA at 909.544 kb on + strand at 909.554 kb on + strand at 909.555 kb on - strand at 909.555 kb on - strand at 909.644 kb on + strand at 909.669 kb on + strand at 909.670 kb on - strand at 909.725 kb on + strand at 909.726 kb on - strand at 909.726 kb on - strand at 909.726 kb on - strand at 909.739 kb on + strand at 909.740 kb on - strand at 909.740 kb on - strand at 909.786 kb on - strand, within alsC at 909.803 kb on - strand, within alsC at 909.803 kb on - strand, within alsC at 909.805 kb on + strand, within alsC at 909.805 kb on + strand, within alsC at 909.806 kb on - strand, within alsC at 909.806 kb on - strand, within alsC at 909.806 kb on - strand, within alsC at 909.988 kb on - strand, within alsC at 910.044 kb on + strand, within alsC at 910.124 kb on + strand, within alsC at 910.124 kb on + strand, within alsC at 910.125 kb on - strand, within alsC at 910.167 kb on + strand, within alsC at 910.167 kb on + strand, within alsC at 910.167 kb on + strand, within alsC at 910.168 kb on - strand, within alsC at 910.177 kb on - strand, within alsC at 910.259 kb on + strand, within alsC at 910.259 kb on + strand, within alsC at 910.260 kb on - strand, within alsC at 910.260 kb on - strand, within alsC at 910.260 kb on - strand, within alsC at 910.292 kb on + strand, within alsC at 910.333 kb on + strand, within alsC at 910.333 kb on + strand, within alsC at 910.427 kb on + strand, within alsC at 910.427 kb on + strand, within alsC at 910.427 kb on + strand, within alsC at 910.428 kb on - strand, within alsC at 910.428 kb on - strand, within alsC at 910.552 kb on - strand at 910.559 kb on + strand at 910.559 kb on + strand at 910.560 kb on - strand at 910.560 kb on - strand at 910.563 kb on - strand at 910.587 kb on + strand at 910.587 kb on + strand at 910.588 kb on - strand at 910.618 kb on + strand at 910.618 kb on + strand at 910.619 kb on - strand at 910.619 kb on - strand at 910.619 kb on - strand at 910.619 kb on - strand at 910.619 kb on - strand at 910.619 kb on - strand at 910.624 kb on + strand at 910.624 kb on + strand at 910.625 kb on - strand at 910.625 kb on - strand at 910.625 kb on - strand at 910.625 kb on - strand at 910.628 kb on + strand at 910.628 kb on + strand at 910.668 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction TP2 remove 907,165 + -0.1 907,401 + alsB NOLOHH_04975 0.35 +0.6 907,402 - alsB NOLOHH_04975 0.35 -1.4 907,485 - alsB NOLOHH_04975 0.44 -1.9 907,521 - alsB NOLOHH_04975 0.47 +0.0 907,569 - alsB NOLOHH_04975 0.53 +0.1 907,679 + alsB NOLOHH_04975 0.64 +0.3 907,715 + alsB NOLOHH_04975 0.68 -0.1 907,737 + alsB NOLOHH_04975 0.71 -2.7 907,738 - alsB NOLOHH_04975 0.71 +0.2 907,807 + alsB NOLOHH_04975 0.78 +1.6 907,952 + -1.5 908,094 + +0.0 908,151 + +2.0 908,154 - -0.2 908,340 - alsA NOLOHH_04980 0.13 -0.1 908,576 - alsA NOLOHH_04980 0.29 +0.0 908,685 + alsA NOLOHH_04980 0.36 +0.7 908,686 - alsA NOLOHH_04980 0.36 +1.9 908,686 - alsA NOLOHH_04980 0.36 +0.5 908,736 + alsA NOLOHH_04980 0.39 -0.8 908,736 + alsA NOLOHH_04980 0.39 +0.8 908,737 - alsA NOLOHH_04980 0.39 -2.3 908,738 + alsA NOLOHH_04980 0.39 +1.5 908,739 - alsA NOLOHH_04980 0.39 +0.6 908,739 - alsA NOLOHH_04980 0.39 +0.0 908,739 - alsA NOLOHH_04980 0.39 +0.0 908,739 - alsA NOLOHH_04980 0.39 -0.5 908,781 + alsA NOLOHH_04980 0.42 -2.5 908,783 + alsA NOLOHH_04980 0.42 -0.1 908,784 - alsA NOLOHH_04980 0.42 -0.4 908,863 + alsA NOLOHH_04980 0.47 +1.4 908,991 - alsA NOLOHH_04980 0.56 -2.0 908,991 - alsA NOLOHH_04980 0.56 +1.4 909,010 + alsA NOLOHH_04980 0.57 -0.1 909,044 + alsA NOLOHH_04980 0.59 +1.8 909,045 - alsA NOLOHH_04980 0.59 -1.0 909,045 - alsA NOLOHH_04980 0.59 -1.5 909,045 - alsA NOLOHH_04980 0.59 -0.7 909,045 - alsA NOLOHH_04980 0.59 +0.7 909,105 - alsA NOLOHH_04980 0.63 +3.0 909,116 + alsA NOLOHH_04980 0.64 +0.5 909,117 - alsA NOLOHH_04980 0.64 -0.1 909,162 + alsA NOLOHH_04980 0.67 -0.7 909,162 + alsA NOLOHH_04980 0.67 +0.0 909,162 + alsA NOLOHH_04980 0.67 -0.1 909,162 + alsA NOLOHH_04980 0.67 -0.4 909,162 + alsA NOLOHH_04980 0.67 -0.0 909,162 + alsA NOLOHH_04980 0.67 -1.8 909,162 + alsA NOLOHH_04980 0.67 +1.4 909,163 - alsA NOLOHH_04980 0.67 +0.0 909,163 - alsA NOLOHH_04980 0.67 -0.1 909,163 - alsA NOLOHH_04980 0.67 -0.3 909,163 - alsA NOLOHH_04980 0.67 +0.0 909,163 - alsA NOLOHH_04980 0.67 +1.0 909,163 - alsA NOLOHH_04980 0.67 +1.0 909,163 - alsA NOLOHH_04980 0.67 -0.3 909,256 - alsA NOLOHH_04980 0.73 -0.1 909,257 + alsA NOLOHH_04980 0.73 -1.3 909,356 + alsA NOLOHH_04980 0.79 -1.3 909,357 - alsA NOLOHH_04980 0.79 -1.4 909,432 - alsA NOLOHH_04980 0.84 +0.0 909,484 - alsA NOLOHH_04980 0.88 +0.7 909,544 + -0.3 909,554 + +0.4 909,555 - +1.0 909,555 - -1.8 909,644 + -1.1 909,669 + +0.7 909,670 - -2.1 909,725 + +1.4 909,726 - +0.0 909,726 - +2.6 909,726 - +2.3 909,739 + -1.0 909,740 - -0.5 909,740 - +0.7 909,786 - alsC NOLOHH_04985 0.14 +1.0 909,803 - alsC NOLOHH_04985 0.16 +0.2 909,803 - alsC NOLOHH_04985 0.16 +0.9 909,805 + alsC NOLOHH_04985 0.16 -1.3 909,805 + alsC NOLOHH_04985 0.16 +0.8 909,806 - alsC NOLOHH_04985 0.16 +1.3 909,806 - alsC NOLOHH_04985 0.16 -0.9 909,806 - alsC NOLOHH_04985 0.16 +0.4 909,988 - alsC NOLOHH_04985 0.34 -2.0 910,044 + alsC NOLOHH_04985 0.40 +0.6 910,124 + alsC NOLOHH_04985 0.48 -0.5 910,124 + alsC NOLOHH_04985 0.48 -0.5 910,125 - alsC NOLOHH_04985 0.48 -0.7 910,167 + alsC NOLOHH_04985 0.53 -2.3 910,167 + alsC NOLOHH_04985 0.53 -1.0 910,167 + alsC NOLOHH_04985 0.53 +1.8 910,168 - alsC NOLOHH_04985 0.53 -1.0 910,177 - alsC NOLOHH_04985 0.54 -0.5 910,259 + alsC NOLOHH_04985 0.62 -0.7 910,259 + alsC NOLOHH_04985 0.62 -0.5 910,260 - alsC NOLOHH_04985 0.62 -2.4 910,260 - alsC NOLOHH_04985 0.62 +1.0 910,260 - alsC NOLOHH_04985 0.62 -0.6 910,292 + alsC NOLOHH_04985 0.65 -2.3 910,333 + alsC NOLOHH_04985 0.70 +1.2 910,333 + alsC NOLOHH_04985 0.70 -2.3 910,427 + alsC NOLOHH_04985 0.79 +0.0 910,427 + alsC NOLOHH_04985 0.79 +0.0 910,427 + alsC NOLOHH_04985 0.79 -1.5 910,428 - alsC NOLOHH_04985 0.79 -1.1 910,428 - alsC NOLOHH_04985 0.79 +0.9 910,552 - +0.1 910,559 + +1.6 910,559 + -2.3 910,560 - +1.3 910,560 - +1.0 910,563 - -2.0 910,587 + -1.4 910,587 + +0.0 910,588 - -0.4 910,618 + -1.1 910,618 + -0.1 910,619 - -1.5 910,619 - -0.8 910,619 - +1.3 910,619 - -0.2 910,619 - -0.2 910,619 - -0.8 910,624 + +0.0 910,624 + +1.0 910,625 - +0.7 910,625 - -0.3 910,625 - -0.5 910,625 - +0.5 910,628 + +2.9 910,628 + -0.6 910,668 - -1.5
Or see this region's nucleotide sequence