Experiment: TP2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ppa and chpB are separated by 79 nucleotides chpB and chpS are separated by 29 nucleotides chpS and ytfP are separated by 211 nucleotides ytfP and tamB are separated by 2 nucleotides
NOLOHH_04235: ppa - inorganic diphosphatase, at 768,733 to 769,263
ppa
NOLOHH_04240: chpB - type II toxin-antitoxin system ChpB family toxin, at 769,343 to 769,657
chpB
NOLOHH_04245: chpS - type II toxin-antitoxin system antitoxin ChpS, at 769,687 to 769,938
chpS
NOLOHH_04250: ytfP - Gamma-glutamylcyclotransferase family protein YtfP, at 770,150 to 770,491
ytfP
NOLOHH_04255: tamB - autotransporter assembly complex protein TamB, at 770,494 to 774,273
tamB
Position (kb) 770
771 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 769.261 kb on + strand at 769.319 kb on - strand at 769.333 kb on + strand at 769.334 kb on - strand at 769.344 kb on + strand at 769.344 kb on + strand at 769.345 kb on - strand at 769.367 kb on + strand at 769.431 kb on - strand, within chpB at 769.431 kb on - strand, within chpB at 769.431 kb on - strand, within chpB at 769.493 kb on + strand, within chpB at 769.493 kb on + strand, within chpB at 769.494 kb on - strand, within chpB at 769.516 kb on - strand, within chpB at 769.693 kb on + strand at 769.693 kb on + strand at 769.693 kb on + strand at 769.740 kb on + strand, within chpS at 769.741 kb on - strand, within chpS at 769.862 kb on - strand, within chpS at 769.862 kb on - strand, within chpS at 769.867 kb on - strand, within chpS at 769.867 kb on - strand, within chpS at 769.867 kb on - strand, within chpS at 769.867 kb on - strand, within chpS at 769.899 kb on + strand, within chpS at 769.899 kb on + strand, within chpS at 769.899 kb on + strand, within chpS at 769.900 kb on - strand, within chpS at 769.900 kb on - strand, within chpS at 769.900 kb on - strand, within chpS at 769.924 kb on + strand at 769.929 kb on + strand at 769.929 kb on + strand at 769.929 kb on + strand at 769.930 kb on - strand at 769.930 kb on - strand at 769.932 kb on + strand at 769.933 kb on - strand at 769.933 kb on - strand at 769.958 kb on - strand at 769.979 kb on + strand at 769.979 kb on + strand at 769.993 kb on + strand at 769.994 kb on - strand at 770.044 kb on - strand at 770.086 kb on - strand at 770.139 kb on + strand at 770.140 kb on - strand at 770.140 kb on - strand at 770.146 kb on - strand at 770.146 kb on - strand at 770.146 kb on - strand at 770.146 kb on - strand at 770.152 kb on - strand at 770.152 kb on - strand at 770.156 kb on - strand at 770.156 kb on - strand at 770.156 kb on - strand at 770.156 kb on - strand at 770.186 kb on + strand, within ytfP at 770.187 kb on - strand, within ytfP at 770.220 kb on + strand, within ytfP at 770.221 kb on - strand, within ytfP at 770.221 kb on - strand, within ytfP at 770.221 kb on - strand, within ytfP at 770.339 kb on + strand, within ytfP at 770.385 kb on + strand, within ytfP at 770.385 kb on + strand, within ytfP at 770.385 kb on + strand, within ytfP at 770.385 kb on + strand, within ytfP at 770.386 kb on - strand, within ytfP at 770.386 kb on - strand, within ytfP at 770.386 kb on - strand, within ytfP at 770.386 kb on - strand, within ytfP at 770.386 kb on - strand, within ytfP at 770.395 kb on - strand, within ytfP at 770.466 kb on - strand at 770.466 kb on - strand at 770.484 kb on - strand at 770.495 kb on + strand at 770.495 kb on + strand at 770.510 kb on + strand at 770.534 kb on - strand at 770.557 kb on + strand at 770.557 kb on + strand at 770.557 kb on + strand at 770.557 kb on + strand at 770.557 kb on + strand at 770.557 kb on + strand at 770.558 kb on - strand at 770.558 kb on - strand at 770.558 kb on - strand at 770.558 kb on - strand at 770.558 kb on - strand at 770.582 kb on - strand at 770.596 kb on + strand at 770.596 kb on + strand at 770.598 kb on + strand at 770.608 kb on + strand at 770.609 kb on - strand at 770.609 kb on - strand at 770.610 kb on + strand at 770.644 kb on + strand at 770.644 kb on + strand at 770.644 kb on + strand at 770.644 kb on + strand at 770.645 kb on - strand at 770.645 kb on - strand at 770.645 kb on - strand at 770.648 kb on + strand at 770.663 kb on - strand at 770.711 kb on - strand at 770.830 kb on + strand at 770.831 kb on - strand at 770.961 kb on + strand, within tamB at 770.961 kb on + strand, within tamB at 770.974 kb on - strand, within tamB at 771.008 kb on - strand, within tamB at 771.114 kb on + strand, within tamB at 771.115 kb on - strand, within tamB at 771.165 kb on + strand, within tamB at 771.190 kb on - strand, within tamB at 771.271 kb on + strand, within tamB at 771.364 kb on + strand, within tamB at 771.364 kb on + strand, within tamB at 771.364 kb on + strand, within tamB at 771.379 kb on + strand, within tamB at 771.379 kb on + strand, within tamB at 771.392 kb on - strand, within tamB at 771.420 kb on + strand, within tamB at 771.489 kb on - strand, within tamB
Per-strain Table
Position Strand Gene LocusTag Fraction TP2 remove 769,261 + -1.5 769,319 - -0.2 769,333 + +0.7 769,334 - -1.8 769,344 + -1.3 769,344 + +0.9 769,345 - +0.8 769,367 + +2.0 769,431 - chpB NOLOHH_04240 0.28 +0.6 769,431 - chpB NOLOHH_04240 0.28 -1.0 769,431 - chpB NOLOHH_04240 0.28 +0.7 769,493 + chpB NOLOHH_04240 0.48 +0.6 769,493 + chpB NOLOHH_04240 0.48 +2.6 769,494 - chpB NOLOHH_04240 0.48 +0.6 769,516 - chpB NOLOHH_04240 0.55 +0.0 769,693 + -0.1 769,693 + +1.0 769,693 + -0.6 769,740 + chpS NOLOHH_04245 0.21 +0.3 769,741 - chpS NOLOHH_04245 0.21 +0.7 769,862 - chpS NOLOHH_04245 0.69 +2.5 769,862 - chpS NOLOHH_04245 0.69 +0.7 769,867 - chpS NOLOHH_04245 0.71 +1.0 769,867 - chpS NOLOHH_04245 0.71 +0.7 769,867 - chpS NOLOHH_04245 0.71 +0.5 769,867 - chpS NOLOHH_04245 0.71 +0.8 769,899 + chpS NOLOHH_04245 0.84 +0.0 769,899 + chpS NOLOHH_04245 0.84 -2.1 769,899 + chpS NOLOHH_04245 0.84 -0.5 769,900 - chpS NOLOHH_04245 0.85 -1.7 769,900 - chpS NOLOHH_04245 0.85 +0.1 769,900 - chpS NOLOHH_04245 0.85 -0.4 769,924 + -2.0 769,929 + -1.8 769,929 + -0.4 769,929 + -2.0 769,930 - +1.0 769,930 - +0.3 769,932 + -1.8 769,933 - +0.2 769,933 - +1.0 769,958 - +2.0 769,979 + -1.4 769,979 + -0.1 769,993 + -1.1 769,994 - -1.0 770,044 - +0.6 770,086 - +0.6 770,139 + +0.8 770,140 - +1.5 770,140 - +0.3 770,146 - -1.3 770,146 - +1.0 770,146 - -0.4 770,146 - -1.8 770,152 - -0.8 770,152 - +1.0 770,156 - -1.0 770,156 - +1.2 770,156 - -0.2 770,156 - -0.8 770,186 + ytfP NOLOHH_04250 0.11 +0.6 770,187 - ytfP NOLOHH_04250 0.11 -0.3 770,220 + ytfP NOLOHH_04250 0.20 -1.0 770,221 - ytfP NOLOHH_04250 0.21 +0.0 770,221 - ytfP NOLOHH_04250 0.21 -1.0 770,221 - ytfP NOLOHH_04250 0.21 -0.7 770,339 + ytfP NOLOHH_04250 0.55 +0.6 770,385 + ytfP NOLOHH_04250 0.69 +1.0 770,385 + ytfP NOLOHH_04250 0.69 -1.5 770,385 + ytfP NOLOHH_04250 0.69 +1.0 770,385 + ytfP NOLOHH_04250 0.69 -1.0 770,386 - ytfP NOLOHH_04250 0.69 -1.8 770,386 - ytfP NOLOHH_04250 0.69 -1.1 770,386 - ytfP NOLOHH_04250 0.69 +0.7 770,386 - ytfP NOLOHH_04250 0.69 +1.0 770,386 - ytfP NOLOHH_04250 0.69 +1.5 770,395 - ytfP NOLOHH_04250 0.72 -0.2 770,466 - -0.5 770,466 - -2.1 770,484 - -0.1 770,495 + -0.1 770,495 + -1.0 770,510 + +0.0 770,534 - +0.5 770,557 + -2.0 770,557 + +0.0 770,557 + +1.8 770,557 + -1.0 770,557 + +0.9 770,557 + -1.9 770,558 - -1.1 770,558 - -0.0 770,558 - -1.8 770,558 - +0.2 770,558 - -0.2 770,582 - -1.8 770,596 + -0.5 770,596 + +1.6 770,598 + +1.0 770,608 + +1.0 770,609 - -0.4 770,609 - +0.7 770,610 + -0.3 770,644 + +2.6 770,644 + -0.3 770,644 + +0.9 770,644 + +0.0 770,645 - -0.2 770,645 - +0.0 770,645 - +1.0 770,648 + +0.5 770,663 - -1.2 770,711 - -0.5 770,830 + +0.0 770,831 - +2.2 770,961 + tamB NOLOHH_04255 0.12 -1.0 770,961 + tamB NOLOHH_04255 0.12 -2.1 770,974 - tamB NOLOHH_04255 0.13 -1.1 771,008 - tamB NOLOHH_04255 0.14 +0.9 771,114 + tamB NOLOHH_04255 0.16 -2.1 771,115 - tamB NOLOHH_04255 0.16 -0.8 771,165 + tamB NOLOHH_04255 0.18 +0.0 771,190 - tamB NOLOHH_04255 0.18 +0.8 771,271 + tamB NOLOHH_04255 0.21 -0.7 771,364 + tamB NOLOHH_04255 0.23 -2.5 771,364 + tamB NOLOHH_04255 0.23 +0.2 771,364 + tamB NOLOHH_04255 0.23 -1.1 771,379 + tamB NOLOHH_04255 0.23 +0.5 771,379 + tamB NOLOHH_04255 0.23 -1.0 771,392 - tamB NOLOHH_04255 0.24 -1.0 771,420 + tamB NOLOHH_04255 0.24 -2.9 771,489 - tamB NOLOHH_04255 0.26 -1.5
Or see this region's nucleotide sequence