Experiment: TP2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt arcA and creD are separated by 59 nucleotides creD and creC are separated by 57 nucleotides
NOLOHH_03455: arcA - two-component system response regulator ArcA, at 610,981 to 611,697
arcA
NOLOHH_03460: creD - cell envelope integrity protein CreD, at 611,757 to 613,109
creD
NOLOHH_03465: creC - two-component system sensor histidine kinase CreC, at 613,167 to 614,591
creC
Position (kb) 611
612
613
614 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 610.810 kb on + strand at 610.825 kb on + strand at 610.826 kb on - strand at 610.870 kb on + strand at 610.874 kb on + strand at 610.874 kb on + strand at 610.902 kb on + strand at 610.902 kb on + strand at 610.940 kb on + strand at 610.940 kb on + strand at 610.957 kb on + strand at 611.772 kb on + strand at 611.772 kb on + strand at 611.772 kb on + strand at 611.772 kb on + strand at 611.772 kb on + strand at 611.773 kb on - strand at 611.773 kb on - strand at 611.773 kb on - strand at 611.773 kb on - strand at 611.773 kb on - strand at 611.789 kb on + strand at 611.790 kb on - strand at 611.790 kb on - strand at 611.790 kb on - strand at 611.830 kb on + strand at 611.830 kb on + strand at 611.843 kb on + strand at 611.844 kb on - strand at 611.966 kb on + strand, within creD at 612.011 kb on - strand, within creD at 612.011 kb on - strand, within creD at 612.014 kb on + strand, within creD at 612.072 kb on - strand, within creD at 612.100 kb on + strand, within creD at 612.101 kb on - strand, within creD at 612.133 kb on + strand, within creD at 612.134 kb on - strand, within creD at 612.136 kb on - strand, within creD at 612.148 kb on - strand, within creD at 612.188 kb on + strand, within creD at 612.245 kb on - strand, within creD at 612.335 kb on + strand, within creD at 612.336 kb on - strand, within creD at 612.414 kb on + strand, within creD at 612.415 kb on - strand, within creD at 612.462 kb on - strand, within creD at 612.462 kb on - strand, within creD at 612.515 kb on + strand, within creD at 612.653 kb on + strand, within creD at 612.684 kb on - strand, within creD at 612.696 kb on + strand, within creD at 612.696 kb on + strand, within creD at 612.696 kb on + strand, within creD at 612.704 kb on + strand, within creD at 612.704 kb on + strand, within creD at 612.704 kb on + strand, within creD at 612.704 kb on + strand, within creD at 612.785 kb on + strand, within creD at 612.787 kb on + strand, within creD at 612.787 kb on + strand, within creD at 612.788 kb on - strand, within creD at 612.788 kb on - strand, within creD at 612.788 kb on - strand, within creD at 612.796 kb on - strand, within creD at 612.846 kb on + strand, within creD at 612.888 kb on - strand, within creD at 612.905 kb on + strand, within creD at 612.905 kb on + strand, within creD at 612.905 kb on + strand, within creD at 612.905 kb on + strand, within creD at 612.907 kb on + strand, within creD at 612.908 kb on - strand, within creD at 612.965 kb on + strand, within creD at 612.965 kb on + strand, within creD at 613.059 kb on + strand at 613.059 kb on + strand at 613.060 kb on - strand at 613.109 kb on + strand at 613.109 kb on + strand at 613.110 kb on - strand at 613.110 kb on - strand at 613.110 kb on - strand at 613.138 kb on + strand at 613.147 kb on + strand at 613.148 kb on - strand at 613.148 kb on - strand at 613.148 kb on - strand at 613.148 kb on - strand at 613.168 kb on + strand at 613.168 kb on + strand at 613.169 kb on - strand at 613.169 kb on - strand at 613.169 kb on - strand at 613.169 kb on - strand at 613.322 kb on - strand, within creC at 613.338 kb on - strand, within creC at 613.362 kb on - strand, within creC at 613.420 kb on - strand, within creC at 613.427 kb on + strand, within creC at 613.427 kb on + strand, within creC at 613.427 kb on + strand, within creC at 613.428 kb on - strand, within creC at 613.428 kb on - strand, within creC at 613.428 kb on - strand, within creC at 613.467 kb on + strand, within creC at 613.467 kb on + strand, within creC at 613.491 kb on + strand, within creC at 613.515 kb on - strand, within creC at 613.536 kb on + strand, within creC at 613.536 kb on + strand, within creC at 613.536 kb on + strand, within creC at 613.536 kb on + strand, within creC at 613.537 kb on - strand, within creC at 613.537 kb on - strand, within creC at 613.537 kb on - strand, within creC at 613.594 kb on - strand, within creC at 613.657 kb on - strand, within creC at 613.657 kb on - strand, within creC at 613.657 kb on - strand, within creC at 613.659 kb on + strand, within creC at 613.810 kb on + strand, within creC at 613.811 kb on - strand, within creC at 613.816 kb on + strand, within creC at 613.817 kb on - strand, within creC at 613.817 kb on - strand, within creC at 613.827 kb on - strand, within creC at 613.827 kb on - strand, within creC at 613.827 kb on - strand, within creC at 613.829 kb on - strand, within creC at 613.856 kb on + strand, within creC at 613.856 kb on + strand, within creC at 613.856 kb on + strand, within creC at 613.857 kb on - strand, within creC at 613.857 kb on - strand, within creC at 613.881 kb on - strand, within creC at 613.922 kb on + strand, within creC at 613.945 kb on + strand, within creC at 614.060 kb on + strand, within creC at 614.061 kb on - strand, within creC at 614.095 kb on - strand, within creC
Per-strain Table
Position Strand Gene LocusTag Fraction TP2 remove 610,810 + +2.6 610,825 + -0.1 610,826 - -0.0 610,870 + -1.0 610,874 + -0.6 610,874 + -1.5 610,902 + -1.9 610,902 + -1.6 610,940 + -2.3 610,940 + -2.3 610,957 + -1.0 611,772 + +0.6 611,772 + +1.3 611,772 + +0.4 611,772 + +2.7 611,772 + +1.0 611,773 - +1.8 611,773 - +0.8 611,773 - -1.0 611,773 - +0.2 611,773 - -0.2 611,789 + +0.7 611,790 - +0.5 611,790 - -2.7 611,790 - -0.6 611,830 + -0.5 611,830 + -0.3 611,843 + +0.4 611,844 - -0.3 611,966 + creD NOLOHH_03460 0.15 -2.0 612,011 - creD NOLOHH_03460 0.19 +2.6 612,011 - creD NOLOHH_03460 0.19 +1.0 612,014 + creD NOLOHH_03460 0.19 -0.6 612,072 - creD NOLOHH_03460 0.23 +1.1 612,100 + creD NOLOHH_03460 0.25 -0.8 612,101 - creD NOLOHH_03460 0.25 +0.7 612,133 + creD NOLOHH_03460 0.28 +1.0 612,134 - creD NOLOHH_03460 0.28 -0.6 612,136 - creD NOLOHH_03460 0.28 +0.3 612,148 - creD NOLOHH_03460 0.29 +1.0 612,188 + creD NOLOHH_03460 0.32 +1.0 612,245 - creD NOLOHH_03460 0.36 +0.5 612,335 + creD NOLOHH_03460 0.43 +0.5 612,336 - creD NOLOHH_03460 0.43 -1.5 612,414 + creD NOLOHH_03460 0.49 +1.3 612,415 - creD NOLOHH_03460 0.49 +1.0 612,462 - creD NOLOHH_03460 0.52 -0.6 612,462 - creD NOLOHH_03460 0.52 -3.5 612,515 + creD NOLOHH_03460 0.56 +0.2 612,653 + creD NOLOHH_03460 0.66 +0.7 612,684 - creD NOLOHH_03460 0.69 +1.0 612,696 + creD NOLOHH_03460 0.69 -0.2 612,696 + creD NOLOHH_03460 0.69 -1.3 612,696 + creD NOLOHH_03460 0.69 +1.4 612,704 + creD NOLOHH_03460 0.70 -0.2 612,704 + creD NOLOHH_03460 0.70 -0.3 612,704 + creD NOLOHH_03460 0.70 +0.2 612,704 + creD NOLOHH_03460 0.70 +0.3 612,785 + creD NOLOHH_03460 0.76 +0.1 612,787 + creD NOLOHH_03460 0.76 -0.0 612,787 + creD NOLOHH_03460 0.76 +1.2 612,788 - creD NOLOHH_03460 0.76 +1.3 612,788 - creD NOLOHH_03460 0.76 +1.5 612,788 - creD NOLOHH_03460 0.76 +1.4 612,796 - creD NOLOHH_03460 0.77 +0.7 612,846 + creD NOLOHH_03460 0.80 +1.4 612,888 - creD NOLOHH_03460 0.84 -0.2 612,905 + creD NOLOHH_03460 0.85 +2.0 612,905 + creD NOLOHH_03460 0.85 -1.0 612,905 + creD NOLOHH_03460 0.85 +1.4 612,905 + creD NOLOHH_03460 0.85 -0.0 612,907 + creD NOLOHH_03460 0.85 -0.0 612,908 - creD NOLOHH_03460 0.85 -0.1 612,965 + creD NOLOHH_03460 0.89 -1.2 612,965 + creD NOLOHH_03460 0.89 -1.6 613,059 + +1.2 613,059 + -0.7 613,060 - -1.0 613,109 + -0.6 613,109 + -0.6 613,110 - -0.7 613,110 - +2.0 613,110 - +1.0 613,138 + +0.1 613,147 + +1.7 613,148 - -2.5 613,148 - -0.9 613,148 - -1.2 613,148 - +0.2 613,168 + -0.9 613,168 + -0.5 613,169 - +0.2 613,169 - -1.8 613,169 - -0.2 613,169 - -1.7 613,322 - creC NOLOHH_03465 0.11 -0.0 613,338 - creC NOLOHH_03465 0.12 -0.0 613,362 - creC NOLOHH_03465 0.14 -1.2 613,420 - creC NOLOHH_03465 0.18 -1.1 613,427 + creC NOLOHH_03465 0.18 -0.0 613,427 + creC NOLOHH_03465 0.18 +0.6 613,427 + creC NOLOHH_03465 0.18 +0.4 613,428 - creC NOLOHH_03465 0.18 -0.0 613,428 - creC NOLOHH_03465 0.18 +0.4 613,428 - creC NOLOHH_03465 0.18 -0.0 613,467 + creC NOLOHH_03465 0.21 +0.1 613,467 + creC NOLOHH_03465 0.21 -1.8 613,491 + creC NOLOHH_03465 0.23 +0.6 613,515 - creC NOLOHH_03465 0.24 -0.0 613,536 + creC NOLOHH_03465 0.26 +1.6 613,536 + creC NOLOHH_03465 0.26 +0.7 613,536 + creC NOLOHH_03465 0.26 -1.2 613,536 + creC NOLOHH_03465 0.26 -1.3 613,537 - creC NOLOHH_03465 0.26 +1.2 613,537 - creC NOLOHH_03465 0.26 +2.6 613,537 - creC NOLOHH_03465 0.26 -0.4 613,594 - creC NOLOHH_03465 0.30 -0.7 613,657 - creC NOLOHH_03465 0.34 +0.4 613,657 - creC NOLOHH_03465 0.34 +1.4 613,657 - creC NOLOHH_03465 0.34 +0.4 613,659 + creC NOLOHH_03465 0.35 -0.0 613,810 + creC NOLOHH_03465 0.45 -1.2 613,811 - creC NOLOHH_03465 0.45 -0.6 613,816 + creC NOLOHH_03465 0.46 -0.2 613,817 - creC NOLOHH_03465 0.46 -0.2 613,817 - creC NOLOHH_03465 0.46 +1.1 613,827 - creC NOLOHH_03465 0.46 -1.3 613,827 - creC NOLOHH_03465 0.46 -0.6 613,827 - creC NOLOHH_03465 0.46 +0.6 613,829 - creC NOLOHH_03465 0.46 -0.8 613,856 + creC NOLOHH_03465 0.48 -0.0 613,856 + creC NOLOHH_03465 0.48 +2.3 613,856 + creC NOLOHH_03465 0.48 -1.6 613,857 - creC NOLOHH_03465 0.48 -1.2 613,857 - creC NOLOHH_03465 0.48 -0.0 613,881 - creC NOLOHH_03465 0.50 -2.2 613,922 + creC NOLOHH_03465 0.53 -0.6 613,945 + creC NOLOHH_03465 0.55 -0.3 614,060 + creC NOLOHH_03465 0.63 -0.3 614,061 - creC NOLOHH_03465 0.63 +0.5 614,095 - creC NOLOHH_03465 0.65 +1.0
Or see this region's nucleotide sequence