Experiment: TP2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt degP and dgt are separated by 129 nucleotides dgt and mtnN are separated by 83 nucleotides mtnN and btuF overlap by 8 nucleotides
NOLOHH_02600: degP - serine endoprotease DegP, at 427,365 to 428,789
degP
NOLOHH_02605: dgt - dGTPase, at 428,919 to 430,436
dgt
NOLOHH_02610: mtnN - 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase, at 430,520 to 431,218
mtnN
NOLOHH_02615: btuF - vitamin B12 ABC transporter substrate-binding protein BtuF, at 431,211 to 432,011
btuF
Position (kb) 428
429
430
431 Strain fitness (log2 ratio) -2
-1
0
1
2 at 427.979 kb on + strand, within degP at 428.088 kb on - strand, within degP at 428.128 kb on + strand, within degP at 428.225 kb on - strand, within degP at 428.225 kb on - strand, within degP at 428.262 kb on - strand, within degP at 428.262 kb on - strand, within degP at 428.262 kb on - strand, within degP at 428.349 kb on - strand, within degP at 428.372 kb on + strand, within degP at 428.373 kb on - strand, within degP at 428.373 kb on - strand, within degP at 428.416 kb on + strand, within degP at 428.417 kb on - strand, within degP at 428.417 kb on - strand, within degP at 428.589 kb on - strand, within degP at 428.597 kb on + strand, within degP at 428.597 kb on + strand, within degP at 428.598 kb on - strand, within degP at 428.598 kb on - strand, within degP at 428.619 kb on + strand, within degP at 428.619 kb on + strand, within degP at 428.620 kb on - strand, within degP at 428.773 kb on - strand at 428.773 kb on - strand at 428.792 kb on - strand at 428.792 kb on - strand at 428.813 kb on + strand at 428.848 kb on - strand at 428.985 kb on - strand at 428.986 kb on + strand at 428.986 kb on + strand at 428.987 kb on - strand at 429.017 kb on - strand at 429.017 kb on - strand at 429.073 kb on + strand, within dgt at 429.073 kb on + strand, within dgt at 429.074 kb on - strand, within dgt at 429.162 kb on - strand, within dgt at 429.294 kb on + strand, within dgt at 429.294 kb on + strand, within dgt at 429.294 kb on + strand, within dgt at 429.411 kb on - strand, within dgt at 429.434 kb on - strand, within dgt at 429.470 kb on + strand, within dgt at 429.622 kb on + strand, within dgt at 429.623 kb on - strand, within dgt at 429.686 kb on + strand, within dgt at 429.686 kb on + strand, within dgt at 429.687 kb on - strand, within dgt at 429.710 kb on + strand, within dgt at 429.711 kb on - strand, within dgt at 429.712 kb on + strand, within dgt at 429.713 kb on - strand, within dgt at 429.713 kb on - strand, within dgt at 429.800 kb on + strand, within dgt at 429.808 kb on - strand, within dgt at 429.854 kb on + strand, within dgt at 429.854 kb on + strand, within dgt at 429.854 kb on + strand, within dgt at 429.854 kb on + strand, within dgt at 429.854 kb on + strand, within dgt at 429.855 kb on - strand, within dgt at 429.892 kb on + strand, within dgt at 429.897 kb on + strand, within dgt at 429.897 kb on + strand, within dgt at 429.897 kb on + strand, within dgt at 429.897 kb on + strand, within dgt at 429.897 kb on + strand, within dgt at 429.897 kb on + strand, within dgt at 429.898 kb on - strand, within dgt at 429.898 kb on - strand, within dgt at 429.898 kb on - strand, within dgt at 429.898 kb on - strand, within dgt at 429.898 kb on - strand, within dgt at 429.957 kb on + strand, within dgt at 429.958 kb on - strand, within dgt at 430.017 kb on + strand, within dgt at 430.018 kb on - strand, within dgt at 430.018 kb on - strand, within dgt at 430.018 kb on - strand, within dgt at 430.163 kb on + strand, within dgt at 430.164 kb on - strand, within dgt at 430.164 kb on - strand, within dgt at 430.182 kb on + strand, within dgt at 430.183 kb on - strand, within dgt at 430.183 kb on - strand, within dgt at 430.201 kb on + strand, within dgt at 430.202 kb on - strand, within dgt at 430.202 kb on - strand, within dgt at 430.236 kb on - strand, within dgt at 430.322 kb on + strand at 430.457 kb on + strand at 430.457 kb on + strand at 430.457 kb on + strand at 430.458 kb on - strand at 430.458 kb on - strand at 430.458 kb on - strand at 430.458 kb on - strand at 430.480 kb on + strand at 430.481 kb on - strand at 430.485 kb on + strand at 430.485 kb on + strand at 431.216 kb on + strand at 431.216 kb on + strand at 431.216 kb on + strand at 431.217 kb on - strand at 431.217 kb on - strand at 431.358 kb on + strand, within btuF at 431.358 kb on + strand, within btuF at 431.359 kb on - strand, within btuF at 431.368 kb on - strand, within btuF
Per-strain Table
Position Strand Gene LocusTag Fraction TP2 remove 427,979 + degP NOLOHH_02600 0.43 +2.2 428,088 - degP NOLOHH_02600 0.51 -1.5 428,128 + degP NOLOHH_02600 0.54 +0.8 428,225 - degP NOLOHH_02600 0.60 +0.1 428,225 - degP NOLOHH_02600 0.60 +1.2 428,262 - degP NOLOHH_02600 0.63 -0.9 428,262 - degP NOLOHH_02600 0.63 -0.5 428,262 - degP NOLOHH_02600 0.63 -2.2 428,349 - degP NOLOHH_02600 0.69 +1.1 428,372 + degP NOLOHH_02600 0.71 +0.9 428,373 - degP NOLOHH_02600 0.71 +0.8 428,373 - degP NOLOHH_02600 0.71 +0.9 428,416 + degP NOLOHH_02600 0.74 +1.1 428,417 - degP NOLOHH_02600 0.74 +1.5 428,417 - degP NOLOHH_02600 0.74 +0.9 428,589 - degP NOLOHH_02600 0.86 -0.2 428,597 + degP NOLOHH_02600 0.86 -1.7 428,597 + degP NOLOHH_02600 0.86 +0.7 428,598 - degP NOLOHH_02600 0.87 +0.6 428,598 - degP NOLOHH_02600 0.87 -1.7 428,619 + degP NOLOHH_02600 0.88 -1.1 428,619 + degP NOLOHH_02600 0.88 -1.7 428,620 - degP NOLOHH_02600 0.88 +0.9 428,773 - -0.4 428,773 - -1.1 428,792 - -1.4 428,792 - +0.9 428,813 + -0.7 428,848 - +0.0 428,985 - -2.4 428,986 + +0.6 428,986 + +1.3 428,987 - +0.2 429,017 - +0.9 429,017 - -1.1 429,073 + dgt NOLOHH_02605 0.10 -0.4 429,073 + dgt NOLOHH_02605 0.10 -0.4 429,074 - dgt NOLOHH_02605 0.10 -0.1 429,162 - dgt NOLOHH_02605 0.16 +0.2 429,294 + dgt NOLOHH_02605 0.25 -0.9 429,294 + dgt NOLOHH_02605 0.25 +1.5 429,294 + dgt NOLOHH_02605 0.25 -1.4 429,411 - dgt NOLOHH_02605 0.32 -0.3 429,434 - dgt NOLOHH_02605 0.34 +0.2 429,470 + dgt NOLOHH_02605 0.36 +0.2 429,622 + dgt NOLOHH_02605 0.46 +1.9 429,623 - dgt NOLOHH_02605 0.46 +0.1 429,686 + dgt NOLOHH_02605 0.51 -0.7 429,686 + dgt NOLOHH_02605 0.51 -0.9 429,687 - dgt NOLOHH_02605 0.51 +0.3 429,710 + dgt NOLOHH_02605 0.52 +1.4 429,711 - dgt NOLOHH_02605 0.52 +0.1 429,712 + dgt NOLOHH_02605 0.52 -1.1 429,713 - dgt NOLOHH_02605 0.52 +1.9 429,713 - dgt NOLOHH_02605 0.52 -0.3 429,800 + dgt NOLOHH_02605 0.58 -1.9 429,808 - dgt NOLOHH_02605 0.59 +1.1 429,854 + dgt NOLOHH_02605 0.62 +0.7 429,854 + dgt NOLOHH_02605 0.62 +0.7 429,854 + dgt NOLOHH_02605 0.62 +1.3 429,854 + dgt NOLOHH_02605 0.62 +0.1 429,854 + dgt NOLOHH_02605 0.62 +0.9 429,855 - dgt NOLOHH_02605 0.62 -0.3 429,892 + dgt NOLOHH_02605 0.64 +0.1 429,897 + dgt NOLOHH_02605 0.64 +0.9 429,897 + dgt NOLOHH_02605 0.64 +1.9 429,897 + dgt NOLOHH_02605 0.64 +0.1 429,897 + dgt NOLOHH_02605 0.64 -1.0 429,897 + dgt NOLOHH_02605 0.64 -0.1 429,897 + dgt NOLOHH_02605 0.64 +1.1 429,898 - dgt NOLOHH_02605 0.64 -0.4 429,898 - dgt NOLOHH_02605 0.64 +0.1 429,898 - dgt NOLOHH_02605 0.64 -2.5 429,898 - dgt NOLOHH_02605 0.64 -1.4 429,898 - dgt NOLOHH_02605 0.64 +1.2 429,957 + dgt NOLOHH_02605 0.68 +0.6 429,958 - dgt NOLOHH_02605 0.68 +0.9 430,017 + dgt NOLOHH_02605 0.72 -1.2 430,018 - dgt NOLOHH_02605 0.72 +0.6 430,018 - dgt NOLOHH_02605 0.72 -0.9 430,018 - dgt NOLOHH_02605 0.72 -0.3 430,163 + dgt NOLOHH_02605 0.82 -1.1 430,164 - dgt NOLOHH_02605 0.82 +1.9 430,164 - dgt NOLOHH_02605 0.82 +0.5 430,182 + dgt NOLOHH_02605 0.83 +0.1 430,183 - dgt NOLOHH_02605 0.83 +0.9 430,183 - dgt NOLOHH_02605 0.83 -0.2 430,201 + dgt NOLOHH_02605 0.84 -0.1 430,202 - dgt NOLOHH_02605 0.85 -0.9 430,202 - dgt NOLOHH_02605 0.85 -1.1 430,236 - dgt NOLOHH_02605 0.87 +0.9 430,322 + -0.9 430,457 + +0.6 430,457 + +0.2 430,457 + -0.4 430,458 - -1.2 430,458 - -1.7 430,458 - -0.7 430,458 - +1.6 430,480 + -0.4 430,481 - -1.7 430,485 + -0.9 430,485 + +0.4 431,216 + +1.4 431,216 + -0.1 431,216 + -0.3 431,217 - -0.1 431,217 - -0.7 431,358 + btuF NOLOHH_02615 0.18 -0.7 431,358 + btuF NOLOHH_02615 0.18 +0.5 431,359 - btuF NOLOHH_02615 0.18 +0.4 431,368 - btuF NOLOHH_02615 0.20 -1.2
Or see this region's nucleotide sequence