Experiment: TP2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt fdeC and NOLOHH_01955 are separated by 871 nucleotides NOLOHH_01955 and ykgR are separated by 124 nucleotides ykgR and rpmE2-1 are separated by 361 nucleotides rpmE2-1 and NOLOHH_01970 overlap by 1 nucleotides
NOLOHH_01950: fdeC - inverse autotransporter adhesin FdeC, at 294,825 to 299,078
fdeC
NOLOHH_01955: NOLOHH_01955 - hypothetical protein, at 299,950 to 300,069
_01955
NOLOHH_01960: ykgR - Uncharacterized membrane protein YkgR, at 300,194 to 300,295
ykgR
NOLOHH_01965: rpmE2-1 - type B 50S ribosomal protein L31, at 300,657 to 300,920
rpmE2-1
NOLOHH_01970: NOLOHH_01970 - 50S ribosomal protein L36 2, at 300,920 to 301,060
_01970
Position (kb) 299
300
301 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 299.719 kb on - strand at 299.726 kb on + strand at 299.729 kb on + strand at 299.853 kb on + strand at 299.854 kb on - strand at 299.854 kb on - strand at 299.857 kb on + strand at 299.867 kb on - strand at 299.881 kb on + strand at 299.882 kb on - strand at 299.925 kb on - strand at 299.941 kb on + strand at 299.949 kb on + strand at 299.950 kb on - strand at 300.045 kb on + strand, within NOLOHH_01955 at 300.045 kb on + strand, within NOLOHH_01955 at 300.046 kb on - strand, within NOLOHH_01955 at 300.046 kb on - strand, within NOLOHH_01955 at 300.140 kb on - strand at 300.146 kb on - strand at 300.146 kb on - strand at 300.148 kb on - strand at 300.158 kb on - strand at 300.267 kb on - strand, within ykgR at 300.293 kb on + strand at 300.363 kb on + strand at 300.386 kb on - strand at 300.399 kb on + strand at 300.409 kb on + strand at 300.444 kb on - strand at 300.532 kb on + strand at 300.619 kb on + strand at 300.620 kb on - strand at 300.620 kb on - strand at 300.686 kb on + strand, within rpmE2-1 at 300.687 kb on - strand, within rpmE2-1 at 300.721 kb on - strand, within rpmE2-1 at 300.721 kb on - strand, within rpmE2-1 at 300.721 kb on - strand, within rpmE2-1 at 300.725 kb on + strand, within rpmE2-1 at 300.781 kb on - strand, within rpmE2-1 at 300.781 kb on - strand, within rpmE2-1 at 300.787 kb on - strand, within rpmE2-1 at 300.825 kb on + strand, within rpmE2-1 at 300.825 kb on + strand, within rpmE2-1 at 300.826 kb on - strand, within rpmE2-1 at 300.827 kb on + strand, within rpmE2-1 at 300.827 kb on + strand, within rpmE2-1 at 300.931 kb on + strand at 300.932 kb on - strand at 300.996 kb on + strand, within NOLOHH_01970 at 300.996 kb on + strand, within NOLOHH_01970 at 300.996 kb on + strand, within NOLOHH_01970 at 300.996 kb on + strand, within NOLOHH_01970 at 300.996 kb on + strand, within NOLOHH_01970 at 300.998 kb on + strand, within NOLOHH_01970 at 300.999 kb on - strand, within NOLOHH_01970 at 300.999 kb on - strand, within NOLOHH_01970 at 300.999 kb on - strand, within NOLOHH_01970 at 300.999 kb on - strand, within NOLOHH_01970 at 301.009 kb on + strand, within NOLOHH_01970 at 301.027 kb on + strand, within NOLOHH_01970
Per-strain Table
Position Strand Gene LocusTag Fraction TP2 remove 299,719 - +0.9 299,726 + +1.6 299,729 + -1.8 299,853 + +0.7 299,854 - +0.1 299,854 - +1.9 299,857 + -2.4 299,867 - +0.8 299,881 + -2.1 299,882 - -1.5 299,925 - +3.2 299,941 + +0.2 299,949 + +0.9 299,950 - -0.1 300,045 + NOLOHH_01955 0.79 -0.7 300,045 + NOLOHH_01955 0.79 +0.9 300,046 - NOLOHH_01955 0.80 +0.6 300,046 - NOLOHH_01955 0.80 -0.1 300,140 - +0.1 300,146 - +0.9 300,146 - +0.9 300,148 - -1.7 300,158 - -1.8 300,267 - ykgR NOLOHH_01960 0.72 +0.3 300,293 + -0.5 300,363 + -0.7 300,386 - -0.4 300,399 + +0.3 300,409 + +0.3 300,444 - -0.1 300,532 + +0.1 300,619 + -2.7 300,620 - +0.3 300,620 - -0.8 300,686 + rpmE2-1 NOLOHH_01965 0.11 +0.4 300,687 - rpmE2-1 NOLOHH_01965 0.11 -0.5 300,721 - rpmE2-1 NOLOHH_01965 0.24 +0.8 300,721 - rpmE2-1 NOLOHH_01965 0.24 -1.9 300,721 - rpmE2-1 NOLOHH_01965 0.24 -0.7 300,725 + rpmE2-1 NOLOHH_01965 0.26 -1.2 300,781 - rpmE2-1 NOLOHH_01965 0.47 +1.3 300,781 - rpmE2-1 NOLOHH_01965 0.47 +0.3 300,787 - rpmE2-1 NOLOHH_01965 0.49 -0.4 300,825 + rpmE2-1 NOLOHH_01965 0.64 +0.3 300,825 + rpmE2-1 NOLOHH_01965 0.64 +0.0 300,826 - rpmE2-1 NOLOHH_01965 0.64 -0.4 300,827 + rpmE2-1 NOLOHH_01965 0.64 -1.9 300,827 + rpmE2-1 NOLOHH_01965 0.64 +1.1 300,931 + -2.6 300,932 - -0.1 300,996 + NOLOHH_01970 0.54 +0.2 300,996 + NOLOHH_01970 0.54 +0.9 300,996 + NOLOHH_01970 0.54 -0.0 300,996 + NOLOHH_01970 0.54 +0.9 300,996 + NOLOHH_01970 0.54 -2.3 300,998 + NOLOHH_01970 0.55 +0.3 300,999 - NOLOHH_01970 0.56 -0.6 300,999 - NOLOHH_01970 0.56 +0.6 300,999 - NOLOHH_01970 0.56 -0.7 300,999 - NOLOHH_01970 0.56 +0.2 301,009 + NOLOHH_01970 0.63 +1.8 301,027 + NOLOHH_01970 0.76 -0.7
Or see this region's nucleotide sequence