Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_04069

Experiment: EBB2 MOI1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_04067 and OHPLBJKB_04068 are separated by 3 nucleotidesOHPLBJKB_04068 and OHPLBJKB_04069 are separated by 158 nucleotidesOHPLBJKB_04069 and OHPLBJKB_04070 are separated by 1 nucleotidesOHPLBJKB_04070 and OHPLBJKB_04071 are separated by 229 nucleotides OHPLBJKB_04067: OHPLBJKB_04067 - 50S ribosomal protein L1, at 4,276,835 to 4,277,539 _04067 OHPLBJKB_04068: OHPLBJKB_04068 - 50S ribosomal protein L11, at 4,277,543 to 4,277,971 _04068 OHPLBJKB_04069: OHPLBJKB_04069 - Transcription termination/antitermination protein NusG, at 4,278,130 to 4,278,675 _04069 OHPLBJKB_04070: OHPLBJKB_04070 - Protein translocase subunit SecE, at 4,278,677 to 4,279,060 _04070 OHPLBJKB_04071: OHPLBJKB_04071 - Elongation factor Tu 2, at 4,279,290 to 4,280,474 _04071 Position (kb) 4278 4279Strain fitness (log2 ratio) -1 0 1at 4279.547 kb on - strand, within OHPLBJKB_04071at 4279.547 kb on - strand, within OHPLBJKB_04071at 4279.547 kb on - strand, within OHPLBJKB_04071

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Per-strain Table

Position Strand Gene LocusTag Fraction EBB2 MOI1
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4,279,547 - OHPLBJKB_04071 0.22 +0.7
4,279,547 - OHPLBJKB_04071 0.22 +0.7
4,279,547 - OHPLBJKB_04071 0.22 +1.3

Or see this region's nucleotide sequence