Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_03566

Experiment: EBB2 MOI1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_03565 and OHPLBJKB_03566 overlap by 4 nucleotidesOHPLBJKB_03566 and OHPLBJKB_03567 are separated by 1 nucleotidesOHPLBJKB_03567 and OHPLBJKB_03568 overlap by 8 nucleotides OHPLBJKB_03565: OHPLBJKB_03565 - Cell division protein FtsA, at 3,735,463 to 3,736,725 _03565 OHPLBJKB_03566: OHPLBJKB_03566 - Cell division protein FtsQ, at 3,736,722 to 3,737,552 _03566 OHPLBJKB_03567: OHPLBJKB_03567 - D-alanine--D-alanine ligase B, at 3,737,554 to 3,738,474 _03567 OHPLBJKB_03568: OHPLBJKB_03568 - UDP-N-acetylmuramate--L-alanine ligase, at 3,738,467 to 3,739,942 _03568 Position (kb) 3736 3737 3738Strain fitness (log2 ratio) -2 -1 0 1at 3737.602 kb on - strandat 3737.676 kb on - strand, within OHPLBJKB_03567at 3737.710 kb on - strand, within OHPLBJKB_03567at 3737.732 kb on - strand, within OHPLBJKB_03567at 3737.732 kb on - strand, within OHPLBJKB_03567at 3737.732 kb on - strand, within OHPLBJKB_03567at 3737.841 kb on - strand, within OHPLBJKB_03567at 3737.847 kb on - strand, within OHPLBJKB_03567at 3737.873 kb on - strand, within OHPLBJKB_03567at 3738.005 kb on - strand, within OHPLBJKB_03567at 3738.182 kb on - strand, within OHPLBJKB_03567at 3738.182 kb on - strand, within OHPLBJKB_03567at 3738.228 kb on - strand, within OHPLBJKB_03567

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Per-strain Table

Position Strand Gene LocusTag Fraction EBB2 MOI1
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3,737,602 - -1.5
3,737,676 - OHPLBJKB_03567 0.13 +0.2
3,737,710 - OHPLBJKB_03567 0.17 +0.9
3,737,732 - OHPLBJKB_03567 0.19 -0.6
3,737,732 - OHPLBJKB_03567 0.19 +0.5
3,737,732 - OHPLBJKB_03567 0.19 -1.2
3,737,841 - OHPLBJKB_03567 0.31 -0.6
3,737,847 - OHPLBJKB_03567 0.32 -0.1
3,737,873 - OHPLBJKB_03567 0.35 -1.1
3,738,005 - OHPLBJKB_03567 0.49 -1.9
3,738,182 - OHPLBJKB_03567 0.68 -0.9
3,738,182 - OHPLBJKB_03567 0.68 +1.2
3,738,228 - OHPLBJKB_03567 0.73 -1.3

Or see this region's nucleotide sequence