Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_00390

Experiment: EBB2 MOI1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_00388 and OHPLBJKB_00389 are separated by 17 nucleotidesOHPLBJKB_00389 and OHPLBJKB_00390 are separated by 12 nucleotidesOHPLBJKB_00390 and OHPLBJKB_00391 overlap by 1 nucleotidesOHPLBJKB_00391 and OHPLBJKB_00392 overlap by 1 nucleotidesOHPLBJKB_00392 and OHPLBJKB_00393 are separated by 164 nucleotidesOHPLBJKB_00393 and OHPLBJKB_00394 are separated by 10 nucleotides OHPLBJKB_00388: OHPLBJKB_00388 - 50S ribosomal protein L22, at 416,325 to 416,657 _00388 OHPLBJKB_00389: OHPLBJKB_00389 - 30S ribosomal protein S3, at 416,675 to 417,376 _00389 OHPLBJKB_00390: OHPLBJKB_00390 - 50S ribosomal protein L16, at 417,389 to 417,799 _00390 OHPLBJKB_00391: OHPLBJKB_00391 - 50S ribosomal protein L29, at 417,799 to 417,990 _00391 OHPLBJKB_00392: OHPLBJKB_00392 - 30S ribosomal protein S17, at 417,990 to 418,244 _00392 OHPLBJKB_00393: OHPLBJKB_00393 - 50S ribosomal protein L14, at 418,409 to 418,780 _00393 OHPLBJKB_00394: OHPLBJKB_00394 - 50S ribosomal protein L24, at 418,791 to 419,105 _00394 Position (kb) 417 418Strain fitness (log2 ratio) -1 0 1at 418.250 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction EBB2 MOI1
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418,250 + +0.5

Or see this region's nucleotide sequence