Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_00185

Experiment: EBB2 MOI1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntOHPLBJKB_00184 and OHPLBJKB_00185 are separated by 210 nucleotidesOHPLBJKB_00185 and OHPLBJKB_00186 are separated by 369 nucleotides OHPLBJKB_00184: OHPLBJKB_00184 - hypothetical protein, at 200,402 to 201,799 _00184 OHPLBJKB_00185: OHPLBJKB_00185 - Glutamate decarboxylase alpha, at 202,010 to 203,410 _00185 OHPLBJKB_00186: OHPLBJKB_00186 - HTH-type transcriptional regulator GadX, at 203,780 to 204,604 _00186 Position (kb) 202 203 204Strain fitness (log2 ratio) -2 -1 0 1 2at 201.118 kb on - strand, within OHPLBJKB_00184at 201.121 kb on + strand, within OHPLBJKB_00184at 201.121 kb on + strand, within OHPLBJKB_00184at 201.121 kb on + strand, within OHPLBJKB_00184at 201.122 kb on - strand, within OHPLBJKB_00184at 201.133 kb on + strand, within OHPLBJKB_00184at 201.133 kb on + strand, within OHPLBJKB_00184at 201.238 kb on + strand, within OHPLBJKB_00184at 201.239 kb on - strand, within OHPLBJKB_00184at 201.245 kb on - strand, within OHPLBJKB_00184at 201.355 kb on + strand, within OHPLBJKB_00184at 201.376 kb on + strand, within OHPLBJKB_00184at 201.616 kb on + strand, within OHPLBJKB_00184at 201.638 kb on + strand, within OHPLBJKB_00184at 201.703 kb on - strandat 201.741 kb on + strandat 201.741 kb on + strandat 201.742 kb on - strandat 201.771 kb on - strandat 201.780 kb on - strandat 201.782 kb on - strandat 201.802 kb on - strandat 201.878 kb on - strandat 201.932 kb on + strandat 202.082 kb on - strandat 202.145 kb on - strandat 202.159 kb on - strand, within OHPLBJKB_00185at 202.159 kb on - strand, within OHPLBJKB_00185at 202.161 kb on - strand, within OHPLBJKB_00185at 203.412 kb on - strandat 203.416 kb on + strandat 203.416 kb on + strandat 203.417 kb on - strandat 203.417 kb on - strandat 203.417 kb on - strandat 203.474 kb on + strandat 203.477 kb on + strandat 203.486 kb on + strandat 203.487 kb on - strandat 203.489 kb on + strandat 203.489 kb on + strandat 203.490 kb on - strandat 203.490 kb on - strandat 203.490 kb on - strandat 203.490 kb on - strandat 203.490 kb on - strandat 203.490 kb on - strandat 203.490 kb on - strandat 203.491 kb on + strandat 203.492 kb on - strandat 203.503 kb on - strandat 203.524 kb on + strandat 203.525 kb on - strandat 203.632 kb on + strandat 203.632 kb on + strandat 203.633 kb on - strandat 203.633 kb on - strandat 203.745 kb on - strandat 203.752 kb on - strandat 203.755 kb on - strandat 203.791 kb on - strandat 203.824 kb on + strandat 203.828 kb on + strandat 203.914 kb on + strand, within OHPLBJKB_00186at 203.962 kb on - strand, within OHPLBJKB_00186at 204.008 kb on - strand, within OHPLBJKB_00186at 204.041 kb on - strand, within OHPLBJKB_00186at 204.115 kb on - strand, within OHPLBJKB_00186at 204.129 kb on + strand, within OHPLBJKB_00186at 204.144 kb on + strand, within OHPLBJKB_00186at 204.239 kb on - strand, within OHPLBJKB_00186at 204.239 kb on - strand, within OHPLBJKB_00186at 204.261 kb on + strand, within OHPLBJKB_00186at 204.335 kb on + strand, within OHPLBJKB_00186at 204.359 kb on - strand, within OHPLBJKB_00186

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction EBB2 MOI1
remove
201,118 - OHPLBJKB_00184 0.51 +0.3
201,121 + OHPLBJKB_00184 0.51 -0.6
201,121 + OHPLBJKB_00184 0.51 +0.6
201,121 + OHPLBJKB_00184 0.51 +0.9
201,122 - OHPLBJKB_00184 0.52 -1.4
201,133 + OHPLBJKB_00184 0.52 +0.3
201,133 + OHPLBJKB_00184 0.52 -1.6
201,238 + OHPLBJKB_00184 0.60 -0.9
201,239 - OHPLBJKB_00184 0.60 +0.6
201,245 - OHPLBJKB_00184 0.60 -2.4
201,355 + OHPLBJKB_00184 0.68 +0.9
201,376 + OHPLBJKB_00184 0.70 -0.1
201,616 + OHPLBJKB_00184 0.87 +0.0
201,638 + OHPLBJKB_00184 0.88 +0.2
201,703 - +1.4
201,741 + +0.4
201,741 + -0.5
201,742 - -0.3
201,771 - +0.5
201,780 - -0.0
201,782 - -1.0
201,802 - -0.5
201,878 - -1.0
201,932 + -0.3
202,082 - -1.4
202,145 - -0.1
202,159 - OHPLBJKB_00185 0.11 -0.0
202,159 - OHPLBJKB_00185 0.11 +0.4
202,161 - OHPLBJKB_00185 0.11 -0.3
203,412 - +0.7
203,416 + -0.6
203,416 + +0.9
203,417 - -0.4
203,417 - +0.4
203,417 - +0.1
203,474 + +0.4
203,477 + -0.6
203,486 + -0.9
203,487 - +2.2
203,489 + -1.7
203,489 + +1.3
203,490 - +0.3
203,490 - +0.4
203,490 - +0.5
203,490 - -0.8
203,490 - +0.5
203,490 - +0.7
203,490 - -0.6
203,491 + +0.0
203,492 - -1.0
203,503 - -0.3
203,524 + +1.3
203,525 - +0.6
203,632 + -1.1
203,632 + +2.5
203,633 - -0.2
203,633 - +0.4
203,745 - +1.1
203,752 - +1.1
203,755 - -0.1
203,791 - -0.7
203,824 + +0.1
203,828 + +0.5
203,914 + OHPLBJKB_00186 0.16 -0.5
203,962 - OHPLBJKB_00186 0.22 -0.5
204,008 - OHPLBJKB_00186 0.28 +0.1
204,041 - OHPLBJKB_00186 0.32 +0.7
204,115 - OHPLBJKB_00186 0.41 -0.4
204,129 + OHPLBJKB_00186 0.42 +1.3
204,144 + OHPLBJKB_00186 0.44 +0.6
204,239 - OHPLBJKB_00186 0.56 -1.6
204,239 - OHPLBJKB_00186 0.56 +0.1
204,261 + OHPLBJKB_00186 0.58 -2.5
204,335 + OHPLBJKB_00186 0.67 -2.2
204,359 - OHPLBJKB_00186 0.70 +0.4

Or see this region's nucleotide sequence