Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_00181

Experiment: EBB2 MOI1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_00180 and OHPLBJKB_00181 are separated by 48 nucleotidesOHPLBJKB_00181 and OHPLBJKB_00182 are separated by 447 nucleotides OHPLBJKB_00180: OHPLBJKB_00180 - Inner membrane protein YhjD, at 195,214 to 196,227 _00180 OHPLBJKB_00181: OHPLBJKB_00181 - HTH-type transcriptional regulator DmlR, at 196,276 to 197,247 _00181 OHPLBJKB_00182: OHPLBJKB_00182 - Putative HTH-type transcriptional regulator YhjB, at 197,695 to 198,297 _00182 Position (kb) 196 197 198Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 195.383 kb on + strand, within OHPLBJKB_00180at 195.383 kb on + strand, within OHPLBJKB_00180at 195.383 kb on + strand, within OHPLBJKB_00180at 195.384 kb on - strand, within OHPLBJKB_00180at 195.384 kb on - strand, within OHPLBJKB_00180at 195.399 kb on + strand, within OHPLBJKB_00180at 195.418 kb on - strand, within OHPLBJKB_00180at 195.503 kb on + strand, within OHPLBJKB_00180at 195.504 kb on - strand, within OHPLBJKB_00180at 195.586 kb on - strand, within OHPLBJKB_00180at 195.589 kb on - strand, within OHPLBJKB_00180at 195.683 kb on + strand, within OHPLBJKB_00180at 195.683 kb on + strand, within OHPLBJKB_00180at 195.684 kb on - strand, within OHPLBJKB_00180at 195.788 kb on + strand, within OHPLBJKB_00180at 195.826 kb on - strand, within OHPLBJKB_00180at 195.826 kb on - strand, within OHPLBJKB_00180at 195.919 kb on + strand, within OHPLBJKB_00180at 195.919 kb on + strand, within OHPLBJKB_00180at 195.982 kb on + strand, within OHPLBJKB_00180at 196.004 kb on + strand, within OHPLBJKB_00180at 196.004 kb on + strand, within OHPLBJKB_00180at 196.005 kb on - strand, within OHPLBJKB_00180at 196.005 kb on - strand, within OHPLBJKB_00180at 196.077 kb on + strand, within OHPLBJKB_00180at 196.135 kb on - strandat 196.267 kb on + strandat 196.269 kb on + strandat 196.270 kb on - strandat 196.298 kb on - strandat 196.327 kb on + strandat 196.358 kb on + strandat 196.400 kb on - strand, within OHPLBJKB_00181at 196.402 kb on + strand, within OHPLBJKB_00181at 196.402 kb on + strand, within OHPLBJKB_00181at 196.410 kb on + strand, within OHPLBJKB_00181at 196.511 kb on - strand, within OHPLBJKB_00181at 196.534 kb on - strand, within OHPLBJKB_00181at 196.534 kb on - strand, within OHPLBJKB_00181at 196.582 kb on + strand, within OHPLBJKB_00181at 196.583 kb on - strand, within OHPLBJKB_00181at 196.583 kb on - strand, within OHPLBJKB_00181at 196.599 kb on + strand, within OHPLBJKB_00181at 196.599 kb on + strand, within OHPLBJKB_00181at 196.599 kb on + strand, within OHPLBJKB_00181at 196.599 kb on + strand, within OHPLBJKB_00181at 196.599 kb on + strand, within OHPLBJKB_00181at 196.599 kb on + strand, within OHPLBJKB_00181at 196.599 kb on + strand, within OHPLBJKB_00181at 196.599 kb on + strand, within OHPLBJKB_00181at 196.600 kb on - strand, within OHPLBJKB_00181at 196.601 kb on + strand, within OHPLBJKB_00181at 196.601 kb on + strand, within OHPLBJKB_00181at 196.610 kb on - strand, within OHPLBJKB_00181at 196.664 kb on + strand, within OHPLBJKB_00181at 196.665 kb on - strand, within OHPLBJKB_00181at 196.747 kb on + strand, within OHPLBJKB_00181at 196.776 kb on + strand, within OHPLBJKB_00181at 196.777 kb on - strand, within OHPLBJKB_00181at 196.777 kb on - strand, within OHPLBJKB_00181at 196.780 kb on + strand, within OHPLBJKB_00181at 196.894 kb on + strand, within OHPLBJKB_00181at 196.895 kb on - strand, within OHPLBJKB_00181at 196.900 kb on - strand, within OHPLBJKB_00181at 196.979 kb on + strand, within OHPLBJKB_00181at 196.980 kb on - strand, within OHPLBJKB_00181at 196.982 kb on + strand, within OHPLBJKB_00181at 196.982 kb on + strand, within OHPLBJKB_00181at 196.982 kb on + strand, within OHPLBJKB_00181at 196.982 kb on + strand, within OHPLBJKB_00181at 196.983 kb on - strand, within OHPLBJKB_00181at 196.983 kb on - strand, within OHPLBJKB_00181at 196.983 kb on - strand, within OHPLBJKB_00181at 196.983 kb on - strand, within OHPLBJKB_00181at 196.983 kb on - strand, within OHPLBJKB_00181at 196.983 kb on - strand, within OHPLBJKB_00181at 197.066 kb on - strand, within OHPLBJKB_00181at 197.352 kb on + strandat 197.390 kb on + strandat 197.475 kb on + strandat 197.475 kb on + strandat 197.476 kb on - strandat 197.476 kb on - strandat 197.476 kb on - strandat 197.478 kb on + strandat 197.491 kb on - strandat 197.491 kb on - strandat 197.517 kb on + strandat 197.548 kb on - strandat 197.558 kb on - strandat 197.574 kb on - strandat 197.674 kb on + strandat 197.675 kb on - strandat 197.675 kb on - strandat 197.702 kb on + strandat 197.730 kb on + strandat 197.731 kb on - strandat 197.764 kb on - strand, within OHPLBJKB_00182at 197.778 kb on + strand, within OHPLBJKB_00182at 197.778 kb on + strand, within OHPLBJKB_00182at 197.827 kb on + strand, within OHPLBJKB_00182at 197.840 kb on + strand, within OHPLBJKB_00182at 197.840 kb on + strand, within OHPLBJKB_00182at 197.840 kb on + strand, within OHPLBJKB_00182at 197.841 kb on - strand, within OHPLBJKB_00182at 197.841 kb on - strand, within OHPLBJKB_00182at 197.841 kb on - strand, within OHPLBJKB_00182at 197.841 kb on - strand, within OHPLBJKB_00182at 197.844 kb on + strand, within OHPLBJKB_00182at 197.844 kb on + strand, within OHPLBJKB_00182at 197.844 kb on + strand, within OHPLBJKB_00182at 197.844 kb on + strand, within OHPLBJKB_00182at 197.845 kb on - strand, within OHPLBJKB_00182at 197.979 kb on + strand, within OHPLBJKB_00182at 197.980 kb on - strand, within OHPLBJKB_00182at 198.036 kb on - strand, within OHPLBJKB_00182at 198.040 kb on - strand, within OHPLBJKB_00182at 198.102 kb on + strand, within OHPLBJKB_00182at 198.103 kb on - strand, within OHPLBJKB_00182at 198.143 kb on + strand, within OHPLBJKB_00182at 198.171 kb on + strand, within OHPLBJKB_00182at 198.172 kb on - strand, within OHPLBJKB_00182at 198.172 kb on - strand, within OHPLBJKB_00182at 198.172 kb on - strand, within OHPLBJKB_00182at 198.172 kb on - strand, within OHPLBJKB_00182at 198.196 kb on - strand, within OHPLBJKB_00182

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Per-strain Table

Position Strand Gene LocusTag Fraction EBB2 MOI1
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195,383 + OHPLBJKB_00180 0.17 -1.6
195,383 + OHPLBJKB_00180 0.17 +1.1
195,383 + OHPLBJKB_00180 0.17 -0.4
195,384 - OHPLBJKB_00180 0.17 +0.6
195,384 - OHPLBJKB_00180 0.17 -1.1
195,399 + OHPLBJKB_00180 0.18 -0.3
195,418 - OHPLBJKB_00180 0.20 -0.3
195,503 + OHPLBJKB_00180 0.29 -1.4
195,504 - OHPLBJKB_00180 0.29 -0.4
195,586 - OHPLBJKB_00180 0.37 -2.0
195,589 - OHPLBJKB_00180 0.37 -0.1
195,683 + OHPLBJKB_00180 0.46 -1.3
195,683 + OHPLBJKB_00180 0.46 +0.0
195,684 - OHPLBJKB_00180 0.46 -1.7
195,788 + OHPLBJKB_00180 0.57 +1.5
195,826 - OHPLBJKB_00180 0.60 -0.9
195,826 - OHPLBJKB_00180 0.60 -0.5
195,919 + OHPLBJKB_00180 0.70 -1.8
195,919 + OHPLBJKB_00180 0.70 -0.7
195,982 + OHPLBJKB_00180 0.76 +0.3
196,004 + OHPLBJKB_00180 0.78 +2.0
196,004 + OHPLBJKB_00180 0.78 -0.1
196,005 - OHPLBJKB_00180 0.78 -1.5
196,005 - OHPLBJKB_00180 0.78 +1.0
196,077 + OHPLBJKB_00180 0.85 -2.1
196,135 - +0.6
196,267 + -1.3
196,269 + -0.6
196,270 - +2.5
196,298 - -0.5
196,327 + +0.8
196,358 + -2.4
196,400 - OHPLBJKB_00181 0.13 +0.3
196,402 + OHPLBJKB_00181 0.13 -1.2
196,402 + OHPLBJKB_00181 0.13 +1.3
196,410 + OHPLBJKB_00181 0.14 +1.4
196,511 - OHPLBJKB_00181 0.24 +0.2
196,534 - OHPLBJKB_00181 0.27 -2.0
196,534 - OHPLBJKB_00181 0.27 +3.1
196,582 + OHPLBJKB_00181 0.31 -1.2
196,583 - OHPLBJKB_00181 0.32 -0.2
196,583 - OHPLBJKB_00181 0.32 -2.9
196,599 + OHPLBJKB_00181 0.33 -1.4
196,599 + OHPLBJKB_00181 0.33 -0.9
196,599 + OHPLBJKB_00181 0.33 +0.2
196,599 + OHPLBJKB_00181 0.33 +0.2
196,599 + OHPLBJKB_00181 0.33 +0.9
196,599 + OHPLBJKB_00181 0.33 -0.0
196,599 + OHPLBJKB_00181 0.33 -0.1
196,599 + OHPLBJKB_00181 0.33 +0.4
196,600 - OHPLBJKB_00181 0.33 -0.4
196,601 + OHPLBJKB_00181 0.33 -2.7
196,601 + OHPLBJKB_00181 0.33 -0.6
196,610 - OHPLBJKB_00181 0.34 +0.3
196,664 + OHPLBJKB_00181 0.40 -2.2
196,665 - OHPLBJKB_00181 0.40 -1.3
196,747 + OHPLBJKB_00181 0.48 -1.4
196,776 + OHPLBJKB_00181 0.51 -1.5
196,777 - OHPLBJKB_00181 0.52 +0.2
196,777 - OHPLBJKB_00181 0.52 -1.4
196,780 + OHPLBJKB_00181 0.52 +0.3
196,894 + OHPLBJKB_00181 0.64 -0.8
196,895 - OHPLBJKB_00181 0.64 -1.2
196,900 - OHPLBJKB_00181 0.64 +0.1
196,979 + OHPLBJKB_00181 0.72 +0.4
196,980 - OHPLBJKB_00181 0.72 +0.5
196,982 + OHPLBJKB_00181 0.73 -1.4
196,982 + OHPLBJKB_00181 0.73 +0.5
196,982 + OHPLBJKB_00181 0.73 +0.0
196,982 + OHPLBJKB_00181 0.73 -0.0
196,983 - OHPLBJKB_00181 0.73 -0.1
196,983 - OHPLBJKB_00181 0.73 +0.0
196,983 - OHPLBJKB_00181 0.73 +0.3
196,983 - OHPLBJKB_00181 0.73 -0.3
196,983 - OHPLBJKB_00181 0.73 +0.2
196,983 - OHPLBJKB_00181 0.73 +0.3
197,066 - OHPLBJKB_00181 0.81 -1.2
197,352 + +1.4
197,390 + +3.0
197,475 + +0.9
197,475 + +0.4
197,476 - +0.2
197,476 - +0.6
197,476 - -2.6
197,478 + -0.4
197,491 - +2.2
197,491 - +2.4
197,517 + -1.0
197,548 - -0.0
197,558 - -1.7
197,574 - -0.1
197,674 + -0.2
197,675 - +0.9
197,675 - +0.4
197,702 + +1.2
197,730 + +0.2
197,731 - +0.3
197,764 - OHPLBJKB_00182 0.11 -2.2
197,778 + OHPLBJKB_00182 0.14 -2.0
197,778 + OHPLBJKB_00182 0.14 +0.1
197,827 + OHPLBJKB_00182 0.22 -0.7
197,840 + OHPLBJKB_00182 0.24 -0.4
197,840 + OHPLBJKB_00182 0.24 -1.5
197,840 + OHPLBJKB_00182 0.24 +0.6
197,841 - OHPLBJKB_00182 0.24 +0.5
197,841 - OHPLBJKB_00182 0.24 -1.4
197,841 - OHPLBJKB_00182 0.24 +1.1
197,841 - OHPLBJKB_00182 0.24 +1.2
197,844 + OHPLBJKB_00182 0.25 -0.7
197,844 + OHPLBJKB_00182 0.25 -1.4
197,844 + OHPLBJKB_00182 0.25 +0.4
197,844 + OHPLBJKB_00182 0.25 +0.4
197,845 - OHPLBJKB_00182 0.25 -0.8
197,979 + OHPLBJKB_00182 0.47 -1.0
197,980 - OHPLBJKB_00182 0.47 +1.1
198,036 - OHPLBJKB_00182 0.57 +0.4
198,040 - OHPLBJKB_00182 0.57 +1.8
198,102 + OHPLBJKB_00182 0.67 +0.3
198,103 - OHPLBJKB_00182 0.68 +0.6
198,143 + OHPLBJKB_00182 0.74 +0.4
198,171 + OHPLBJKB_00182 0.79 -0.6
198,172 - OHPLBJKB_00182 0.79 +1.6
198,172 - OHPLBJKB_00182 0.79 +0.8
198,172 - OHPLBJKB_00182 0.79 -0.5
198,172 - OHPLBJKB_00182 0.79 -0.1
198,196 - OHPLBJKB_00182 0.83 -1.9

Or see this region's nucleotide sequence