Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_00057

Experiment: EBB2 MOI1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_00055 and OHPLBJKB_00056 are separated by 290 nucleotidesOHPLBJKB_00056 and OHPLBJKB_00057 are separated by 39 nucleotidesOHPLBJKB_00057 and OHPLBJKB_00058 are separated by 220 nucleotides OHPLBJKB_00055: OHPLBJKB_00055 - hypothetical protein, at 61,827 to 62,444 _00055 OHPLBJKB_00056: OHPLBJKB_00056 - hypothetical protein, at 62,735 to 63,142 _00056 OHPLBJKB_00057: OHPLBJKB_00057 - hypothetical protein, at 63,182 to 63,559 _00057 OHPLBJKB_00058: OHPLBJKB_00058 - hypothetical protein, at 63,780 to 64,643 _00058 Position (kb) 63 64Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6 7 8at 62.202 kb on + strand, within OHPLBJKB_00055at 62.227 kb on - strand, within OHPLBJKB_00055at 62.254 kb on + strand, within OHPLBJKB_00055at 62.255 kb on - strand, within OHPLBJKB_00055at 62.345 kb on + strand, within OHPLBJKB_00055at 62.346 kb on - strand, within OHPLBJKB_00055at 62.350 kb on - strand, within OHPLBJKB_00055at 62.350 kb on - strand, within OHPLBJKB_00055at 62.360 kb on + strand, within OHPLBJKB_00055at 62.361 kb on - strand, within OHPLBJKB_00055at 62.425 kb on + strandat 62.425 kb on + strandat 62.513 kb on - strandat 62.538 kb on + strandat 62.539 kb on - strandat 62.564 kb on + strandat 62.607 kb on + strandat 62.652 kb on + strandat 62.652 kb on + strandat 62.653 kb on - strandat 62.653 kb on - strandat 62.657 kb on - strandat 62.690 kb on + strandat 62.690 kb on + strandat 62.691 kb on - strandat 62.737 kb on - strandat 62.750 kb on - strandat 62.873 kb on - strand, within OHPLBJKB_00056at 62.875 kb on + strand, within OHPLBJKB_00056at 62.875 kb on + strand, within OHPLBJKB_00056at 62.876 kb on - strand, within OHPLBJKB_00056at 62.969 kb on - strand, within OHPLBJKB_00056at 63.029 kb on + strand, within OHPLBJKB_00056at 63.039 kb on + strand, within OHPLBJKB_00056at 63.039 kb on + strand, within OHPLBJKB_00056at 63.069 kb on - strand, within OHPLBJKB_00056at 63.130 kb on + strandat 63.131 kb on - strandat 63.184 kb on - strandat 63.238 kb on - strand, within OHPLBJKB_00057at 63.284 kb on + strand, within OHPLBJKB_00057at 63.285 kb on - strand, within OHPLBJKB_00057at 63.288 kb on - strand, within OHPLBJKB_00057at 63.350 kb on + strand, within OHPLBJKB_00057at 63.350 kb on + strand, within OHPLBJKB_00057at 63.353 kb on + strand, within OHPLBJKB_00057at 63.353 kb on + strand, within OHPLBJKB_00057at 63.353 kb on + strand, within OHPLBJKB_00057at 63.354 kb on - strand, within OHPLBJKB_00057at 63.354 kb on - strand, within OHPLBJKB_00057at 63.354 kb on - strand, within OHPLBJKB_00057at 63.434 kb on + strand, within OHPLBJKB_00057at 63.487 kb on + strand, within OHPLBJKB_00057at 63.527 kb on + strandat 63.608 kb on + strandat 63.768 kb on + strandat 63.768 kb on + strandat 63.768 kb on + strandat 63.768 kb on + strandat 63.769 kb on - strandat 63.769 kb on - strandat 63.782 kb on - strandat 63.789 kb on - strandat 63.863 kb on + strandat 63.911 kb on + strand, within OHPLBJKB_00058at 63.911 kb on + strand, within OHPLBJKB_00058at 63.912 kb on - strand, within OHPLBJKB_00058at 63.912 kb on - strand, within OHPLBJKB_00058at 63.958 kb on + strand, within OHPLBJKB_00058at 63.959 kb on - strand, within OHPLBJKB_00058at 63.959 kb on - strand, within OHPLBJKB_00058at 64.124 kb on + strand, within OHPLBJKB_00058at 64.220 kb on + strand, within OHPLBJKB_00058at 64.220 kb on + strand, within OHPLBJKB_00058at 64.220 kb on + strand, within OHPLBJKB_00058at 64.221 kb on - strand, within OHPLBJKB_00058at 64.221 kb on - strand, within OHPLBJKB_00058at 64.221 kb on - strand, within OHPLBJKB_00058at 64.427 kb on + strand, within OHPLBJKB_00058at 64.451 kb on + strand, within OHPLBJKB_00058at 64.452 kb on - strand, within OHPLBJKB_00058at 64.487 kb on + strand, within OHPLBJKB_00058at 64.488 kb on - strand, within OHPLBJKB_00058at 64.540 kb on + strand, within OHPLBJKB_00058at 64.540 kb on + strand, within OHPLBJKB_00058at 64.541 kb on - strand, within OHPLBJKB_00058

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Per-strain Table

Position Strand Gene LocusTag Fraction EBB2 MOI1
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62,202 + OHPLBJKB_00055 0.61 +0.9
62,227 - OHPLBJKB_00055 0.65 +0.9
62,254 + OHPLBJKB_00055 0.69 +0.6
62,255 - OHPLBJKB_00055 0.69 -1.4
62,345 + OHPLBJKB_00055 0.84 +0.1
62,346 - OHPLBJKB_00055 0.84 -1.1
62,350 - OHPLBJKB_00055 0.85 +0.4
62,350 - OHPLBJKB_00055 0.85 -0.6
62,360 + OHPLBJKB_00055 0.86 -1.0
62,361 - OHPLBJKB_00055 0.86 +0.3
62,425 + +1.0
62,425 + -2.7
62,513 - +8.4
62,538 + -0.5
62,539 - -2.6
62,564 + +0.1
62,607 + -0.3
62,652 + -0.4
62,652 + +0.4
62,653 - -1.8
62,653 - -0.6
62,657 - -0.2
62,690 + +0.6
62,690 + +0.4
62,691 - -0.9
62,737 - -0.6
62,750 - -0.2
62,873 - OHPLBJKB_00056 0.34 +0.4
62,875 + OHPLBJKB_00056 0.34 -1.3
62,875 + OHPLBJKB_00056 0.34 +0.3
62,876 - OHPLBJKB_00056 0.35 +0.1
62,969 - OHPLBJKB_00056 0.57 +1.0
63,029 + OHPLBJKB_00056 0.72 +0.9
63,039 + OHPLBJKB_00056 0.75 -1.0
63,039 + OHPLBJKB_00056 0.75 -0.9
63,069 - OHPLBJKB_00056 0.82 -0.2
63,130 + +1.6
63,131 - -0.3
63,184 - -0.9
63,238 - OHPLBJKB_00057 0.15 +0.9
63,284 + OHPLBJKB_00057 0.27 +0.5
63,285 - OHPLBJKB_00057 0.27 -1.1
63,288 - OHPLBJKB_00057 0.28 -0.5
63,350 + OHPLBJKB_00057 0.44 +0.3
63,350 + OHPLBJKB_00057 0.44 +1.1
63,353 + OHPLBJKB_00057 0.45 -1.0
63,353 + OHPLBJKB_00057 0.45 +0.3
63,353 + OHPLBJKB_00057 0.45 -1.3
63,354 - OHPLBJKB_00057 0.46 -0.6
63,354 - OHPLBJKB_00057 0.46 -1.5
63,354 - OHPLBJKB_00057 0.46 -1.8
63,434 + OHPLBJKB_00057 0.67 -0.7
63,487 + OHPLBJKB_00057 0.81 +1.5
63,527 + -1.5
63,608 + -1.9
63,768 + -0.4
63,768 + +0.8
63,768 + -0.7
63,768 + -0.4
63,769 - +0.6
63,769 - -0.3
63,782 - -1.6
63,789 - +0.6
63,863 + +1.8
63,911 + OHPLBJKB_00058 0.15 +2.0
63,911 + OHPLBJKB_00058 0.15 +2.9
63,912 - OHPLBJKB_00058 0.15 +0.7
63,912 - OHPLBJKB_00058 0.15 +2.2
63,958 + OHPLBJKB_00058 0.21 +1.3
63,959 - OHPLBJKB_00058 0.21 +1.8
63,959 - OHPLBJKB_00058 0.21 +2.0
64,124 + OHPLBJKB_00058 0.40 +0.7
64,220 + OHPLBJKB_00058 0.51 +2.1
64,220 + OHPLBJKB_00058 0.51 +2.6
64,220 + OHPLBJKB_00058 0.51 -0.5
64,221 - OHPLBJKB_00058 0.51 -0.8
64,221 - OHPLBJKB_00058 0.51 +0.2
64,221 - OHPLBJKB_00058 0.51 +1.9
64,427 + OHPLBJKB_00058 0.75 +1.7
64,451 + OHPLBJKB_00058 0.78 +0.8
64,452 - OHPLBJKB_00058 0.78 -0.4
64,487 + OHPLBJKB_00058 0.82 +1.6
64,488 - OHPLBJKB_00058 0.82 -1.2
64,540 + OHPLBJKB_00058 0.88 +0.9
64,540 + OHPLBJKB_00058 0.88 +1.2
64,541 - OHPLBJKB_00058 0.88 +0.8

Or see this region's nucleotide sequence