Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_13425

Experiment: no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOKGIIK_13415 and OKGIIK_13420 are separated by 31 nucleotidesOKGIIK_13420 and OKGIIK_13425 are separated by 274 nucleotidesOKGIIK_13425 and OKGIIK_13430 overlap by 4 nucleotides OKGIIK_13415: OKGIIK_13415 - SseB family protein, at 2,896,728 to 2,897,267 _13415 OKGIIK_13420: OKGIIK_13420 - DUF45 domain-containing protein, at 2,897,299 to 2,897,769 _13420 OKGIIK_13425: OKGIIK_13425 - DEAD/DEAH box helicase, at 2,898,044 to 2,901,340 _13425 OKGIIK_13430: OKGIIK_13430 - Methylase-S domain-containing protein, at 2,901,337 to 2,902,584 _13430 Position (kb) 2898 2899 2900 2901 2902Strain fitness (log2 ratio) -2 -1 0 1 2at 2897.280 kb on - strandat 2897.280 kb on - strandat 2897.280 kb on - strandat 2897.300 kb on + strandat 2897.300 kb on + strandat 2897.300 kb on + strandat 2897.300 kb on + strandat 2897.300 kb on + strandat 2897.301 kb on - strandat 2897.301 kb on - strandat 2897.303 kb on - strandat 2897.303 kb on - strandat 2897.312 kb on - strandat 2897.583 kb on + strand, within OKGIIK_13420at 2897.584 kb on - strand, within OKGIIK_13420at 2897.765 kb on + strandat 2897.789 kb on + strandat 2897.803 kb on + strandat 2897.803 kb on + strandat 2897.803 kb on + strandat 2897.803 kb on + strandat 2897.804 kb on - strandat 2897.804 kb on - strandat 2897.814 kb on - strandat 2897.976 kb on + strandat 2897.976 kb on + strandat 2897.976 kb on + strandat 2897.977 kb on - strandat 2897.977 kb on - strandat 2897.981 kb on - strandat 2897.981 kb on - strandat 2897.981 kb on - strandat 2898.008 kb on + strandat 2898.009 kb on - strandat 2898.009 kb on - strandat 2898.056 kb on + strandat 2898.218 kb on + strandat 2898.219 kb on - strandat 2898.219 kb on - strandat 2898.312 kb on + strandat 2898.405 kb on + strand, within OKGIIK_13425at 2898.406 kb on - strand, within OKGIIK_13425at 2898.406 kb on - strand, within OKGIIK_13425at 2898.486 kb on + strand, within OKGIIK_13425at 2898.538 kb on + strand, within OKGIIK_13425at 2898.615 kb on + strand, within OKGIIK_13425at 2898.615 kb on + strand, within OKGIIK_13425at 2898.615 kb on + strand, within OKGIIK_13425at 2898.615 kb on + strand, within OKGIIK_13425at 2898.615 kb on + strand, within OKGIIK_13425at 2898.687 kb on + strand, within OKGIIK_13425at 2898.696 kb on + strand, within OKGIIK_13425at 2898.696 kb on + strand, within OKGIIK_13425at 2898.697 kb on - strand, within OKGIIK_13425at 2898.697 kb on - strand, within OKGIIK_13425at 2898.768 kb on + strand, within OKGIIK_13425at 2898.769 kb on - strand, within OKGIIK_13425at 2898.900 kb on + strand, within OKGIIK_13425at 2898.900 kb on + strand, within OKGIIK_13425at 2898.901 kb on - strand, within OKGIIK_13425at 2899.030 kb on - strand, within OKGIIK_13425at 2899.030 kb on - strand, within OKGIIK_13425at 2899.050 kb on + strand, within OKGIIK_13425at 2899.050 kb on + strand, within OKGIIK_13425at 2899.050 kb on + strand, within OKGIIK_13425at 2899.077 kb on + strand, within OKGIIK_13425at 2899.110 kb on + strand, within OKGIIK_13425at 2899.110 kb on + strand, within OKGIIK_13425at 2899.111 kb on - strand, within OKGIIK_13425at 2899.153 kb on - strand, within OKGIIK_13425at 2899.153 kb on - strand, within OKGIIK_13425at 2899.248 kb on + strand, within OKGIIK_13425at 2899.248 kb on + strand, within OKGIIK_13425at 2899.248 kb on + strand, within OKGIIK_13425at 2899.248 kb on + strand, within OKGIIK_13425at 2899.249 kb on - strand, within OKGIIK_13425at 2899.249 kb on - strand, within OKGIIK_13425at 2899.249 kb on - strand, within OKGIIK_13425at 2899.283 kb on - strand, within OKGIIK_13425at 2899.283 kb on - strand, within OKGIIK_13425at 2899.357 kb on - strand, within OKGIIK_13425at 2899.457 kb on - strand, within OKGIIK_13425at 2899.488 kb on - strand, within OKGIIK_13425at 2899.518 kb on + strand, within OKGIIK_13425at 2899.519 kb on - strand, within OKGIIK_13425at 2899.647 kb on + strand, within OKGIIK_13425at 2899.648 kb on - strand, within OKGIIK_13425at 2899.648 kb on - strand, within OKGIIK_13425at 2899.828 kb on - strand, within OKGIIK_13425at 2899.828 kb on - strand, within OKGIIK_13425at 2899.902 kb on + strand, within OKGIIK_13425at 2899.902 kb on + strand, within OKGIIK_13425at 2899.902 kb on + strand, within OKGIIK_13425at 2899.902 kb on + strand, within OKGIIK_13425at 2899.902 kb on + strand, within OKGIIK_13425at 2899.902 kb on + strand, within OKGIIK_13425at 2899.902 kb on + strand, within OKGIIK_13425at 2899.903 kb on - strand, within OKGIIK_13425at 2899.903 kb on - strand, within OKGIIK_13425at 2899.903 kb on - strand, within OKGIIK_13425at 2899.903 kb on - strand, within OKGIIK_13425at 2899.958 kb on - strand, within OKGIIK_13425at 2900.116 kb on + strand, within OKGIIK_13425at 2900.116 kb on + strand, within OKGIIK_13425at 2900.116 kb on + strand, within OKGIIK_13425at 2900.116 kb on + strand, within OKGIIK_13425at 2900.116 kb on + strand, within OKGIIK_13425at 2900.116 kb on + strand, within OKGIIK_13425at 2900.116 kb on + strand, within OKGIIK_13425at 2900.117 kb on - strand, within OKGIIK_13425at 2900.117 kb on - strand, within OKGIIK_13425at 2900.117 kb on - strand, within OKGIIK_13425at 2900.117 kb on - strand, within OKGIIK_13425at 2900.131 kb on + strand, within OKGIIK_13425at 2900.131 kb on + strand, within OKGIIK_13425at 2900.132 kb on - strand, within OKGIIK_13425at 2900.132 kb on - strand, within OKGIIK_13425at 2900.278 kb on + strand, within OKGIIK_13425at 2900.279 kb on - strand, within OKGIIK_13425at 2900.279 kb on - strand, within OKGIIK_13425at 2900.279 kb on - strand, within OKGIIK_13425at 2900.395 kb on - strand, within OKGIIK_13425at 2900.585 kb on - strand, within OKGIIK_13425at 2900.674 kb on + strand, within OKGIIK_13425at 2900.674 kb on + strand, within OKGIIK_13425at 2900.674 kb on + strand, within OKGIIK_13425at 2900.675 kb on - strand, within OKGIIK_13425at 2900.675 kb on - strand, within OKGIIK_13425at 2900.675 kb on - strand, within OKGIIK_13425at 2900.675 kb on - strand, within OKGIIK_13425at 2900.675 kb on - strand, within OKGIIK_13425at 2900.675 kb on - strand, within OKGIIK_13425at 2900.731 kb on - strand, within OKGIIK_13425at 2900.731 kb on - strand, within OKGIIK_13425at 2900.868 kb on + strand, within OKGIIK_13425at 2900.869 kb on - strand, within OKGIIK_13425at 2900.869 kb on - strand, within OKGIIK_13425at 2900.869 kb on - strand, within OKGIIK_13425at 2900.878 kb on + strand, within OKGIIK_13425at 2901.039 kb on - strandat 2901.048 kb on + strandat 2901.048 kb on + strandat 2901.049 kb on - strandat 2901.156 kb on + strandat 2901.157 kb on - strandat 2901.157 kb on - strandat 2901.157 kb on - strandat 2901.256 kb on - strandat 2901.276 kb on - strandat 2901.523 kb on + strand, within OKGIIK_13430at 2901.523 kb on + strand, within OKGIIK_13430at 2901.523 kb on + strand, within OKGIIK_13430at 2901.632 kb on + strand, within OKGIIK_13430at 2901.633 kb on - strand, within OKGIIK_13430at 2901.633 kb on - strand, within OKGIIK_13430at 2901.633 kb on - strand, within OKGIIK_13430at 2901.689 kb on + strand, within OKGIIK_13430at 2901.690 kb on - strand, within OKGIIK_13430at 2901.690 kb on - strand, within OKGIIK_13430at 2901.717 kb on - strand, within OKGIIK_13430at 2901.749 kb on + strand, within OKGIIK_13430at 2901.761 kb on + strand, within OKGIIK_13430at 2901.761 kb on + strand, within OKGIIK_13430at 2901.762 kb on - strand, within OKGIIK_13430at 2901.773 kb on + strand, within OKGIIK_13430at 2901.773 kb on + strand, within OKGIIK_13430at 2901.774 kb on - strand, within OKGIIK_13430at 2901.793 kb on + strand, within OKGIIK_13430at 2901.794 kb on - strand, within OKGIIK_13430at 2901.804 kb on - strand, within OKGIIK_13430at 2901.804 kb on - strand, within OKGIIK_13430at 2901.804 kb on - strand, within OKGIIK_13430at 2901.804 kb on - strand, within OKGIIK_13430at 2901.817 kb on + strand, within OKGIIK_13430at 2901.817 kb on + strand, within OKGIIK_13430at 2901.817 kb on + strand, within OKGIIK_13430at 2901.817 kb on + strand, within OKGIIK_13430at 2901.817 kb on + strand, within OKGIIK_13430at 2901.818 kb on - strand, within OKGIIK_13430at 2901.818 kb on - strand, within OKGIIK_13430at 2901.856 kb on - strand, within OKGIIK_13430at 2901.912 kb on + strand, within OKGIIK_13430at 2901.913 kb on - strand, within OKGIIK_13430at 2901.913 kb on - strand, within OKGIIK_13430at 2901.913 kb on - strand, within OKGIIK_13430at 2901.972 kb on + strand, within OKGIIK_13430at 2901.972 kb on + strand, within OKGIIK_13430at 2901.972 kb on + strand, within OKGIIK_13430at 2901.973 kb on - strand, within OKGIIK_13430at 2901.973 kb on - strand, within OKGIIK_13430at 2902.123 kb on + strand, within OKGIIK_13430at 2902.124 kb on - strand, within OKGIIK_13430at 2902.124 kb on - strand, within OKGIIK_13430at 2902.124 kb on - strand, within OKGIIK_13430at 2902.124 kb on - strand, within OKGIIK_13430at 2902.124 kb on - strand, within OKGIIK_13430at 2902.124 kb on - strand, within OKGIIK_13430at 2902.124 kb on - strand, within OKGIIK_13430at 2902.126 kb on + strand, within OKGIIK_13430at 2902.199 kb on + strand, within OKGIIK_13430at 2902.199 kb on + strand, within OKGIIK_13430at 2902.200 kb on - strand, within OKGIIK_13430at 2902.200 kb on - strand, within OKGIIK_13430at 2902.211 kb on + strand, within OKGIIK_13430

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Per-strain Table

Position Strand Gene LocusTag Fraction no stress control
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2,897,280 - +0.2
2,897,280 - -0.9
2,897,280 - +1.2
2,897,300 + +1.2
2,897,300 + -2.3
2,897,300 + +0.5
2,897,300 + -0.3
2,897,300 + -0.2
2,897,301 - +0.3
2,897,301 - -0.8
2,897,303 - -0.3
2,897,303 - -1.1
2,897,312 - +0.1
2,897,583 + OKGIIK_13420 0.60 +0.0
2,897,584 - OKGIIK_13420 0.61 -0.5
2,897,765 + -0.3
2,897,789 + -0.5
2,897,803 + -1.7
2,897,803 + -0.3
2,897,803 + -1.5
2,897,803 + -0.4
2,897,804 - -2.4
2,897,804 - +0.1
2,897,814 - +0.8
2,897,976 + -0.1
2,897,976 + +0.2
2,897,976 + +1.8
2,897,977 - +0.6
2,897,977 - +1.3
2,897,981 - -0.8
2,897,981 - +1.1
2,897,981 - -0.9
2,898,008 + +0.4
2,898,009 - +0.4
2,898,009 - +0.0
2,898,056 + -1.7
2,898,218 + -1.1
2,898,219 - -0.1
2,898,219 - -1.1
2,898,312 + -0.8
2,898,405 + OKGIIK_13425 0.11 -0.5
2,898,406 - OKGIIK_13425 0.11 +0.2
2,898,406 - OKGIIK_13425 0.11 +0.8
2,898,486 + OKGIIK_13425 0.13 +0.1
2,898,538 + OKGIIK_13425 0.15 +0.6
2,898,615 + OKGIIK_13425 0.17 -1.5
2,898,615 + OKGIIK_13425 0.17 -0.5
2,898,615 + OKGIIK_13425 0.17 +0.9
2,898,615 + OKGIIK_13425 0.17 -1.1
2,898,615 + OKGIIK_13425 0.17 +0.2
2,898,687 + OKGIIK_13425 0.20 -0.3
2,898,696 + OKGIIK_13425 0.20 +1.0
2,898,696 + OKGIIK_13425 0.20 +1.4
2,898,697 - OKGIIK_13425 0.20 +0.3
2,898,697 - OKGIIK_13425 0.20 -2.0
2,898,768 + OKGIIK_13425 0.22 -1.2
2,898,769 - OKGIIK_13425 0.22 +1.2
2,898,900 + OKGIIK_13425 0.26 +0.0
2,898,900 + OKGIIK_13425 0.26 +1.1
2,898,901 - OKGIIK_13425 0.26 +0.2
2,899,030 - OKGIIK_13425 0.30 -0.8
2,899,030 - OKGIIK_13425 0.30 -0.5
2,899,050 + OKGIIK_13425 0.31 +0.9
2,899,050 + OKGIIK_13425 0.31 +1.2
2,899,050 + OKGIIK_13425 0.31 -0.3
2,899,077 + OKGIIK_13425 0.31 -0.2
2,899,110 + OKGIIK_13425 0.32 -1.1
2,899,110 + OKGIIK_13425 0.32 -1.5
2,899,111 - OKGIIK_13425 0.32 -1.5
2,899,153 - OKGIIK_13425 0.34 -0.7
2,899,153 - OKGIIK_13425 0.34 -0.5
2,899,248 + OKGIIK_13425 0.37 -0.5
2,899,248 + OKGIIK_13425 0.37 +0.6
2,899,248 + OKGIIK_13425 0.37 -0.5
2,899,248 + OKGIIK_13425 0.37 -1.7
2,899,249 - OKGIIK_13425 0.37 -0.5
2,899,249 - OKGIIK_13425 0.37 -0.8
2,899,249 - OKGIIK_13425 0.37 +0.0
2,899,283 - OKGIIK_13425 0.38 -0.7
2,899,283 - OKGIIK_13425 0.38 -0.0
2,899,357 - OKGIIK_13425 0.40 -0.1
2,899,457 - OKGIIK_13425 0.43 +0.2
2,899,488 - OKGIIK_13425 0.44 -1.0
2,899,518 + OKGIIK_13425 0.45 +0.5
2,899,519 - OKGIIK_13425 0.45 +0.7
2,899,647 + OKGIIK_13425 0.49 +0.3
2,899,648 - OKGIIK_13425 0.49 +0.2
2,899,648 - OKGIIK_13425 0.49 -0.1
2,899,828 - OKGIIK_13425 0.54 -0.5
2,899,828 - OKGIIK_13425 0.54 +0.2
2,899,902 + OKGIIK_13425 0.56 -1.1
2,899,902 + OKGIIK_13425 0.56 +1.1
2,899,902 + OKGIIK_13425 0.56 +0.3
2,899,902 + OKGIIK_13425 0.56 +0.3
2,899,902 + OKGIIK_13425 0.56 +0.5
2,899,902 + OKGIIK_13425 0.56 +0.6
2,899,902 + OKGIIK_13425 0.56 +0.2
2,899,903 - OKGIIK_13425 0.56 -0.9
2,899,903 - OKGIIK_13425 0.56 -0.5
2,899,903 - OKGIIK_13425 0.56 +0.4
2,899,903 - OKGIIK_13425 0.56 +0.3
2,899,958 - OKGIIK_13425 0.58 -1.5
2,900,116 + OKGIIK_13425 0.63 +0.4
2,900,116 + OKGIIK_13425 0.63 +0.7
2,900,116 + OKGIIK_13425 0.63 -0.5
2,900,116 + OKGIIK_13425 0.63 -0.4
2,900,116 + OKGIIK_13425 0.63 +0.9
2,900,116 + OKGIIK_13425 0.63 -1.5
2,900,116 + OKGIIK_13425 0.63 +0.1
2,900,117 - OKGIIK_13425 0.63 -1.1
2,900,117 - OKGIIK_13425 0.63 +0.9
2,900,117 - OKGIIK_13425 0.63 -0.6
2,900,117 - OKGIIK_13425 0.63 +0.5
2,900,131 + OKGIIK_13425 0.63 -1.3
2,900,131 + OKGIIK_13425 0.63 +1.6
2,900,132 - OKGIIK_13425 0.63 +0.2
2,900,132 - OKGIIK_13425 0.63 -0.1
2,900,278 + OKGIIK_13425 0.68 -1.1
2,900,279 - OKGIIK_13425 0.68 +0.3
2,900,279 - OKGIIK_13425 0.68 +1.0
2,900,279 - OKGIIK_13425 0.68 -0.2
2,900,395 - OKGIIK_13425 0.71 +0.6
2,900,585 - OKGIIK_13425 0.77 +0.5
2,900,674 + OKGIIK_13425 0.80 -1.7
2,900,674 + OKGIIK_13425 0.80 -1.3
2,900,674 + OKGIIK_13425 0.80 -2.2
2,900,675 - OKGIIK_13425 0.80 -0.1
2,900,675 - OKGIIK_13425 0.80 -0.8
2,900,675 - OKGIIK_13425 0.80 +0.3
2,900,675 - OKGIIK_13425 0.80 +1.1
2,900,675 - OKGIIK_13425 0.80 -1.1
2,900,675 - OKGIIK_13425 0.80 +0.1
2,900,731 - OKGIIK_13425 0.81 +0.2
2,900,731 - OKGIIK_13425 0.81 +0.7
2,900,868 + OKGIIK_13425 0.86 -0.7
2,900,869 - OKGIIK_13425 0.86 +0.4
2,900,869 - OKGIIK_13425 0.86 -1.7
2,900,869 - OKGIIK_13425 0.86 -0.5
2,900,878 + OKGIIK_13425 0.86 +0.4
2,901,039 - +0.0
2,901,048 + +0.3
2,901,048 + -0.5
2,901,049 - -1.3
2,901,156 + -0.8
2,901,157 - +0.0
2,901,157 - -1.3
2,901,157 - -0.8
2,901,256 - +1.3
2,901,276 - -0.7
2,901,523 + OKGIIK_13430 0.15 +0.5
2,901,523 + OKGIIK_13430 0.15 +0.5
2,901,523 + OKGIIK_13430 0.15 -0.5
2,901,632 + OKGIIK_13430 0.24 -0.8
2,901,633 - OKGIIK_13430 0.24 +1.2
2,901,633 - OKGIIK_13430 0.24 +0.0
2,901,633 - OKGIIK_13430 0.24 +0.4
2,901,689 + OKGIIK_13430 0.28 -0.4
2,901,690 - OKGIIK_13430 0.28 -0.5
2,901,690 - OKGIIK_13430 0.28 +1.2
2,901,717 - OKGIIK_13430 0.30 -0.8
2,901,749 + OKGIIK_13430 0.33 -0.5
2,901,761 + OKGIIK_13430 0.34 -0.1
2,901,761 + OKGIIK_13430 0.34 +1.3
2,901,762 - OKGIIK_13430 0.34 -0.0
2,901,773 + OKGIIK_13430 0.35 -0.1
2,901,773 + OKGIIK_13430 0.35 +0.0
2,901,774 - OKGIIK_13430 0.35 -1.7
2,901,793 + OKGIIK_13430 0.37 -0.5
2,901,794 - OKGIIK_13430 0.37 +0.5
2,901,804 - OKGIIK_13430 0.37 +1.2
2,901,804 - OKGIIK_13430 0.37 +0.8
2,901,804 - OKGIIK_13430 0.37 +0.3
2,901,804 - OKGIIK_13430 0.37 -0.2
2,901,817 + OKGIIK_13430 0.38 +0.6
2,901,817 + OKGIIK_13430 0.38 -1.1
2,901,817 + OKGIIK_13430 0.38 +1.2
2,901,817 + OKGIIK_13430 0.38 -0.4
2,901,817 + OKGIIK_13430 0.38 +0.4
2,901,818 - OKGIIK_13430 0.39 +0.9
2,901,818 - OKGIIK_13430 0.39 -0.4
2,901,856 - OKGIIK_13430 0.42 +0.9
2,901,912 + OKGIIK_13430 0.46 -0.2
2,901,913 - OKGIIK_13430 0.46 +0.4
2,901,913 - OKGIIK_13430 0.46 +0.5
2,901,913 - OKGIIK_13430 0.46 -0.2
2,901,972 + OKGIIK_13430 0.51 -0.3
2,901,972 + OKGIIK_13430 0.51 -0.3
2,901,972 + OKGIIK_13430 0.51 +0.5
2,901,973 - OKGIIK_13430 0.51 -2.1
2,901,973 - OKGIIK_13430 0.51 +0.9
2,902,123 + OKGIIK_13430 0.63 -0.4
2,902,124 - OKGIIK_13430 0.63 +0.3
2,902,124 - OKGIIK_13430 0.63 +0.5
2,902,124 - OKGIIK_13430 0.63 +0.5
2,902,124 - OKGIIK_13430 0.63 -1.0
2,902,124 - OKGIIK_13430 0.63 +0.6
2,902,124 - OKGIIK_13430 0.63 +1.2
2,902,124 - OKGIIK_13430 0.63 -0.4
2,902,126 + OKGIIK_13430 0.63 +0.3
2,902,199 + OKGIIK_13430 0.69 -0.5
2,902,199 + OKGIIK_13430 0.69 +0.6
2,902,200 - OKGIIK_13430 0.69 -1.8
2,902,200 - OKGIIK_13430 0.69 -0.8
2,902,211 + OKGIIK_13430 0.70 -0.1

Or see this region's nucleotide sequence