Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_13255

Experiment: no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntpqqL and OKGIIK_13250 are separated by 259 nucleotidesOKGIIK_13250 and OKGIIK_13255 are separated by 41 nucleotidesOKGIIK_13255 and ubiJ are separated by 122 nucleotidesubiJ and ubiB overlap by 4 nucleotides OKGIIK_13245: pqqL - peptidase M16, at 2,857,874 to 2,860,732 pqqL OKGIIK_13250: OKGIIK_13250 - hypothetical protein, at 2,860,992 to 2,861,195 _13250 OKGIIK_13255: OKGIIK_13255 - tRNA (cytidine(34)-2'-O)-methyltransferase, at 2,861,237 to 2,861,704 _13255 OKGIIK_13260: ubiJ - sterol-binding protein, at 2,861,827 to 2,862,477 ubiJ OKGIIK_13265: ubiB - ubiquinone biosynthesis regulatory protein kinase UbiB, at 2,862,474 to 2,864,123 ubiB Position (kb) 2861 2862Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 2860.347 kb on + strand, within pqqLat 2860.347 kb on + strand, within pqqLat 2860.347 kb on + strand, within pqqLat 2860.347 kb on + strand, within pqqLat 2860.348 kb on - strand, within pqqLat 2860.348 kb on - strand, within pqqLat 2860.348 kb on - strand, within pqqLat 2860.348 kb on - strand, within pqqLat 2860.348 kb on - strand, within pqqLat 2860.348 kb on - strand, within pqqLat 2860.348 kb on - strand, within pqqLat 2860.348 kb on - strand, within pqqLat 2860.348 kb on - strand, within pqqLat 2860.498 kb on - strandat 2860.498 kb on - strandat 2860.515 kb on + strandat 2860.515 kb on + strandat 2860.515 kb on + strandat 2860.515 kb on + strandat 2860.515 kb on + strandat 2860.515 kb on + strandat 2860.516 kb on - strandat 2860.516 kb on - strandat 2860.516 kb on - strandat 2860.516 kb on - strandat 2860.599 kb on + strandat 2860.599 kb on + strandat 2860.599 kb on + strandat 2860.600 kb on - strandat 2860.600 kb on - strandat 2860.600 kb on - strandat 2860.600 kb on - strandat 2860.600 kb on - strandat 2860.600 kb on - strandat 2860.600 kb on - strandat 2860.755 kb on + strandat 2860.755 kb on + strandat 2860.755 kb on + strandat 2860.755 kb on + strandat 2860.755 kb on + strandat 2860.755 kb on + strandat 2860.755 kb on + strandat 2860.755 kb on + strandat 2860.755 kb on + strandat 2860.755 kb on + strandat 2860.755 kb on + strandat 2860.756 kb on - strandat 2860.756 kb on - strandat 2860.756 kb on - strandat 2860.756 kb on - strandat 2860.756 kb on - strandat 2860.756 kb on - strandat 2860.756 kb on - strandat 2860.756 kb on - strandat 2860.756 kb on - strandat 2860.756 kb on - strandat 2860.756 kb on - strandat 2860.756 kb on - strandat 2860.756 kb on - strandat 2860.888 kb on + strandat 2860.977 kb on + strandat 2860.977 kb on + strandat 2860.977 kb on + strandat 2860.977 kb on + strandat 2860.977 kb on + strandat 2860.977 kb on + strandat 2860.978 kb on - strandat 2860.978 kb on - strandat 2860.978 kb on - strandat 2860.978 kb on - strandat 2860.978 kb on - strandat 2860.978 kb on - strandat 2860.978 kb on - strandat 2860.978 kb on - strandat 2861.226 kb on - strandat 2861.387 kb on + strand, within OKGIIK_13255at 2861.387 kb on + strand, within OKGIIK_13255at 2861.388 kb on - strand, within OKGIIK_13255at 2861.388 kb on - strand, within OKGIIK_13255at 2861.388 kb on - strand, within OKGIIK_13255at 2861.396 kb on + strand, within OKGIIK_13255at 2861.396 kb on + strand, within OKGIIK_13255at 2861.396 kb on + strand, within OKGIIK_13255at 2861.396 kb on + strand, within OKGIIK_13255at 2861.396 kb on + strand, within OKGIIK_13255at 2861.396 kb on + strand, within OKGIIK_13255at 2861.396 kb on + strand, within OKGIIK_13255at 2861.396 kb on + strand, within OKGIIK_13255at 2861.397 kb on - strand, within OKGIIK_13255at 2861.397 kb on - strand, within OKGIIK_13255at 2861.437 kb on + strand, within OKGIIK_13255at 2861.438 kb on - strand, within OKGIIK_13255at 2861.438 kb on - strand, within OKGIIK_13255at 2861.438 kb on - strand, within OKGIIK_13255at 2861.661 kb on - strandat 2861.661 kb on - strandat 2861.661 kb on - strandat 2861.661 kb on - strandat 2861.661 kb on - strandat 2861.661 kb on - strandat 2861.702 kb on + strandat 2861.702 kb on + strandat 2861.703 kb on - strandat 2861.703 kb on - strandat 2861.749 kb on + strandat 2861.749 kb on + strandat 2861.749 kb on + strandat 2861.750 kb on - strandat 2861.750 kb on - strandat 2861.750 kb on - strandat 2861.750 kb on - strandat 2861.793 kb on + strandat 2861.793 kb on + strandat 2861.793 kb on + strandat 2861.793 kb on + strandat 2861.793 kb on + strandat 2861.793 kb on + strandat 2861.793 kb on + strandat 2861.793 kb on + strandat 2861.794 kb on - strandat 2861.794 kb on - strandat 2861.815 kb on + strandat 2861.815 kb on + strandat 2861.815 kb on + strandat 2861.815 kb on + strandat 2861.815 kb on + strandat 2861.815 kb on + strandat 2861.815 kb on + strandat 2861.816 kb on - strandat 2861.816 kb on - strandat 2861.816 kb on - strandat 2861.816 kb on - strandat 2861.867 kb on + strandat 2861.867 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction no stress control
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2,860,347 + pqqL OKGIIK_13245 0.86 -0.5
2,860,347 + pqqL OKGIIK_13245 0.86 -1.5
2,860,347 + pqqL OKGIIK_13245 0.86 +1.0
2,860,347 + pqqL OKGIIK_13245 0.86 -1.5
2,860,348 - pqqL OKGIIK_13245 0.87 +0.1
2,860,348 - pqqL OKGIIK_13245 0.87 -1.1
2,860,348 - pqqL OKGIIK_13245 0.87 +0.5
2,860,348 - pqqL OKGIIK_13245 0.87 -0.3
2,860,348 - pqqL OKGIIK_13245 0.87 -0.9
2,860,348 - pqqL OKGIIK_13245 0.87 -2.9
2,860,348 - pqqL OKGIIK_13245 0.87 -1.9
2,860,348 - pqqL OKGIIK_13245 0.87 -1.7
2,860,348 - pqqL OKGIIK_13245 0.87 -2.7
2,860,498 - -1.2
2,860,498 - -0.5
2,860,515 + -0.7
2,860,515 + -2.0
2,860,515 + +0.3
2,860,515 + -0.5
2,860,515 + -0.5
2,860,515 + +0.0
2,860,516 - -0.3
2,860,516 - -0.3
2,860,516 - +0.7
2,860,516 - +1.1
2,860,599 + -0.6
2,860,599 + +0.4
2,860,599 + -0.8
2,860,600 - -0.9
2,860,600 - -1.1
2,860,600 - +2.1
2,860,600 - -0.5
2,860,600 - -0.3
2,860,600 - -0.3
2,860,600 - -0.8
2,860,755 + +0.8
2,860,755 + -1.8
2,860,755 + +1.4
2,860,755 + -0.6
2,860,755 + +0.5
2,860,755 + +1.0
2,860,755 + -1.2
2,860,755 + -1.3
2,860,755 + -0.0
2,860,755 + +1.1
2,860,755 + -0.2
2,860,756 - -0.0
2,860,756 - -0.5
2,860,756 - +0.4
2,860,756 - -0.6
2,860,756 - -0.6
2,860,756 - -1.5
2,860,756 - -0.2
2,860,756 - -0.3
2,860,756 - -0.2
2,860,756 - -1.2
2,860,756 - -1.1
2,860,756 - +0.2
2,860,756 - +0.5
2,860,888 + +1.1
2,860,977 + -1.2
2,860,977 + -1.2
2,860,977 + -0.2
2,860,977 + -1.5
2,860,977 + -0.0
2,860,977 + -0.5
2,860,978 - +0.4
2,860,978 - -2.2
2,860,978 - +0.1
2,860,978 - -0.7
2,860,978 - +0.8
2,860,978 - -1.2
2,860,978 - +0.5
2,860,978 - +0.7
2,861,226 - -0.9
2,861,387 + OKGIIK_13255 0.32 -1.2
2,861,387 + OKGIIK_13255 0.32 +1.1
2,861,388 - OKGIIK_13255 0.32 -2.8
2,861,388 - OKGIIK_13255 0.32 +0.1
2,861,388 - OKGIIK_13255 0.32 -1.5
2,861,396 + OKGIIK_13255 0.34 -1.7
2,861,396 + OKGIIK_13255 0.34 -0.9
2,861,396 + OKGIIK_13255 0.34 -1.2
2,861,396 + OKGIIK_13255 0.34 +1.1
2,861,396 + OKGIIK_13255 0.34 -0.9
2,861,396 + OKGIIK_13255 0.34 -1.2
2,861,396 + OKGIIK_13255 0.34 -0.9
2,861,396 + OKGIIK_13255 0.34 -0.5
2,861,397 - OKGIIK_13255 0.34 -0.2
2,861,397 - OKGIIK_13255 0.34 +0.3
2,861,437 + OKGIIK_13255 0.43 -1.2
2,861,438 - OKGIIK_13255 0.43 -0.9
2,861,438 - OKGIIK_13255 0.43 -1.4
2,861,438 - OKGIIK_13255 0.43 -2.1
2,861,661 - -0.5
2,861,661 - -1.2
2,861,661 - -1.1
2,861,661 - -1.7
2,861,661 - -0.2
2,861,661 - -0.7
2,861,702 + -2.1
2,861,702 + -1.2
2,861,703 - +0.8
2,861,703 - +1.1
2,861,749 + -1.9
2,861,749 + -2.8
2,861,749 + +1.1
2,861,750 - +1.6
2,861,750 - -2.1
2,861,750 - +3.9
2,861,750 - -2.4
2,861,793 + -0.7
2,861,793 + -1.5
2,861,793 + -0.9
2,861,793 + -1.2
2,861,793 + +0.1
2,861,793 + -0.8
2,861,793 + -1.2
2,861,793 + +0.2
2,861,794 - +0.6
2,861,794 - +0.1
2,861,815 + +1.1
2,861,815 + +0.1
2,861,815 + -1.9
2,861,815 + -1.4
2,861,815 + -0.4
2,861,815 + -2.5
2,861,815 + -1.5
2,861,816 - +0.5
2,861,816 - +0.5
2,861,816 - -0.7
2,861,816 - -2.4
2,861,867 + -1.7
2,861,867 + +0.1

Or see this region's nucleotide sequence