Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_11330

Experiment: no stress control

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntOKGIIK_11325 and lolD are separated by 101 nucleotideslolD and OKGIIK_11335 are separated by 167 nucleotides OKGIIK_11325: OKGIIK_11325 - Peptide ABC transporter permease, at 2,430,298 to 2,431,608 _11325 OKGIIK_11330: lolD - ABC transporter ATP-binding protein, at 2,431,710 to 2,432,432 lolD OKGIIK_11335: OKGIIK_11335 - efflux transporter periplasmic adaptor subunit, at 2,432,600 to 2,433,871 _11335 Position (kb) 2431 2432 2433Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2430.713 kb on + strand, within OKGIIK_11325at 2430.713 kb on + strand, within OKGIIK_11325at 2430.714 kb on - strand, within OKGIIK_11325at 2430.794 kb on + strand, within OKGIIK_11325at 2430.794 kb on + strand, within OKGIIK_11325at 2430.794 kb on + strand, within OKGIIK_11325at 2430.794 kb on + strand, within OKGIIK_11325at 2430.795 kb on - strand, within OKGIIK_11325at 2430.795 kb on - strand, within OKGIIK_11325at 2430.795 kb on - strand, within OKGIIK_11325at 2430.795 kb on - strand, within OKGIIK_11325at 2430.815 kb on + strand, within OKGIIK_11325at 2430.816 kb on - strand, within OKGIIK_11325at 2430.884 kb on + strand, within OKGIIK_11325at 2430.884 kb on + strand, within OKGIIK_11325at 2430.884 kb on + strand, within OKGIIK_11325at 2430.884 kb on + strand, within OKGIIK_11325at 2430.885 kb on - strand, within OKGIIK_11325at 2430.885 kb on - strand, within OKGIIK_11325at 2430.885 kb on - strand, within OKGIIK_11325at 2430.902 kb on + strand, within OKGIIK_11325at 2430.903 kb on - strand, within OKGIIK_11325at 2430.977 kb on + strand, within OKGIIK_11325at 2430.977 kb on + strand, within OKGIIK_11325at 2430.977 kb on + strand, within OKGIIK_11325at 2430.977 kb on + strand, within OKGIIK_11325at 2430.977 kb on + strand, within OKGIIK_11325at 2430.977 kb on + strand, within OKGIIK_11325at 2430.977 kb on + strand, within OKGIIK_11325at 2430.977 kb on + strand, within OKGIIK_11325at 2430.977 kb on + strand, within OKGIIK_11325at 2430.977 kb on + strand, within OKGIIK_11325at 2430.977 kb on + strand, within OKGIIK_11325at 2430.977 kb on + strand, within OKGIIK_11325at 2430.977 kb on + strand, within OKGIIK_11325at 2430.977 kb on + strand, within OKGIIK_11325at 2430.977 kb on + strand, within OKGIIK_11325at 2430.977 kb on + strand, within OKGIIK_11325at 2430.977 kb on + strand, within OKGIIK_11325at 2430.977 kb on + strand, within OKGIIK_11325at 2430.977 kb on + strand, within OKGIIK_11325at 2430.977 kb on + strand, within OKGIIK_11325at 2430.978 kb on - strand, within OKGIIK_11325at 2430.978 kb on - strand, within OKGIIK_11325at 2430.978 kb on - strand, within OKGIIK_11325at 2430.978 kb on - strand, within OKGIIK_11325at 2430.978 kb on - strand, within OKGIIK_11325at 2430.978 kb on - strand, within OKGIIK_11325at 2430.978 kb on - strand, within OKGIIK_11325at 2430.978 kb on - strand, within OKGIIK_11325at 2430.978 kb on - strand, within OKGIIK_11325at 2430.978 kb on - strand, within OKGIIK_11325at 2430.978 kb on - strand, within OKGIIK_11325at 2430.978 kb on - strand, within OKGIIK_11325at 2430.978 kb on - strand, within OKGIIK_11325at 2430.978 kb on - strand, within OKGIIK_11325at 2430.978 kb on - strand, within OKGIIK_11325at 2430.978 kb on - strand, within OKGIIK_11325at 2430.978 kb on - strand, within OKGIIK_11325at 2430.978 kb on - strand, within OKGIIK_11325at 2430.978 kb on - strand, within OKGIIK_11325at 2430.978 kb on - strand, within OKGIIK_11325at 2430.982 kb on - strand, within OKGIIK_11325at 2431.008 kb on + strand, within OKGIIK_11325at 2431.009 kb on - strand, within OKGIIK_11325at 2431.022 kb on + strand, within OKGIIK_11325at 2431.023 kb on - strand, within OKGIIK_11325at 2431.186 kb on - strand, within OKGIIK_11325at 2431.251 kb on - strand, within OKGIIK_11325at 2431.313 kb on + strand, within OKGIIK_11325at 2431.313 kb on + strand, within OKGIIK_11325at 2431.313 kb on + strand, within OKGIIK_11325at 2431.313 kb on + strand, within OKGIIK_11325at 2431.314 kb on - strand, within OKGIIK_11325at 2431.314 kb on - strand, within OKGIIK_11325at 2431.314 kb on - strand, within OKGIIK_11325at 2431.370 kb on + strand, within OKGIIK_11325at 2431.370 kb on + strand, within OKGIIK_11325at 2431.370 kb on + strand, within OKGIIK_11325at 2431.370 kb on + strand, within OKGIIK_11325at 2431.371 kb on - strand, within OKGIIK_11325at 2431.371 kb on - strand, within OKGIIK_11325at 2431.496 kb on + strandat 2431.497 kb on - strandat 2431.497 kb on - strandat 2431.497 kb on - strandat 2431.497 kb on - strandat 2431.595 kb on + strandat 2431.595 kb on + strandat 2431.595 kb on + strandat 2431.595 kb on + strandat 2431.595 kb on + strandat 2431.595 kb on + strandat 2431.595 kb on + strandat 2431.595 kb on + strandat 2431.596 kb on - strandat 2431.596 kb on - strandat 2431.596 kb on - strandat 2431.596 kb on - strandat 2431.596 kb on - strandat 2431.596 kb on - strandat 2431.596 kb on - strandat 2431.596 kb on - strandat 2431.596 kb on - strandat 2431.598 kb on + strandat 2431.598 kb on + strandat 2431.598 kb on + strandat 2431.598 kb on + strandat 2431.599 kb on - strandat 2431.638 kb on + strandat 2432.020 kb on + strand, within lolDat 2432.248 kb on + strand, within lolDat 2432.248 kb on + strand, within lolDat 2432.248 kb on + strand, within lolDat 2432.248 kb on + strand, within lolDat 2432.249 kb on - strand, within lolDat 2432.249 kb on - strand, within lolDat 2432.377 kb on + strandat 2432.377 kb on + strandat 2432.377 kb on + strandat 2432.377 kb on + strandat 2432.377 kb on + strandat 2432.378 kb on - strandat 2432.378 kb on - strandat 2432.402 kb on - strandat 2432.555 kb on + strandat 2432.760 kb on + strand, within OKGIIK_11335at 2432.761 kb on - strand, within OKGIIK_11335at 2432.761 kb on - strand, within OKGIIK_11335at 2432.761 kb on - strand, within OKGIIK_11335at 2432.766 kb on + strand, within OKGIIK_11335at 2432.766 kb on + strand, within OKGIIK_11335at 2432.766 kb on + strand, within OKGIIK_11335at 2432.766 kb on + strand, within OKGIIK_11335at 2432.766 kb on + strand, within OKGIIK_11335at 2432.766 kb on + strand, within OKGIIK_11335at 2432.767 kb on - strand, within OKGIIK_11335at 2432.767 kb on - strand, within OKGIIK_11335at 2432.767 kb on - strand, within OKGIIK_11335at 2432.767 kb on - strand, within OKGIIK_11335at 2433.415 kb on - strand, within OKGIIK_11335at 2433.415 kb on - strand, within OKGIIK_11335

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction no stress control
remove
2,430,713 + OKGIIK_11325 0.32 -0.2
2,430,713 + OKGIIK_11325 0.32 -1.2
2,430,714 - OKGIIK_11325 0.32 -1.7
2,430,794 + OKGIIK_11325 0.38 -0.9
2,430,794 + OKGIIK_11325 0.38 +0.3
2,430,794 + OKGIIK_11325 0.38 -0.0
2,430,794 + OKGIIK_11325 0.38 -0.4
2,430,795 - OKGIIK_11325 0.38 +0.2
2,430,795 - OKGIIK_11325 0.38 +0.6
2,430,795 - OKGIIK_11325 0.38 +1.6
2,430,795 - OKGIIK_11325 0.38 -0.4
2,430,815 + OKGIIK_11325 0.39 -0.2
2,430,816 - OKGIIK_11325 0.40 -0.9
2,430,884 + OKGIIK_11325 0.45 +0.7
2,430,884 + OKGIIK_11325 0.45 +0.4
2,430,884 + OKGIIK_11325 0.45 -0.7
2,430,884 + OKGIIK_11325 0.45 +0.3
2,430,885 - OKGIIK_11325 0.45 -1.0
2,430,885 - OKGIIK_11325 0.45 -0.4
2,430,885 - OKGIIK_11325 0.45 +0.6
2,430,902 + OKGIIK_11325 0.46 -0.2
2,430,903 - OKGIIK_11325 0.46 -0.1
2,430,977 + OKGIIK_11325 0.52 -1.0
2,430,977 + OKGIIK_11325 0.52 +1.1
2,430,977 + OKGIIK_11325 0.52 -0.2
2,430,977 + OKGIIK_11325 0.52 +0.1
2,430,977 + OKGIIK_11325 0.52 +1.0
2,430,977 + OKGIIK_11325 0.52 +2.2
2,430,977 + OKGIIK_11325 0.52 -1.4
2,430,977 + OKGIIK_11325 0.52 -0.0
2,430,977 + OKGIIK_11325 0.52 +1.0
2,430,977 + OKGIIK_11325 0.52 +0.1
2,430,977 + OKGIIK_11325 0.52 +0.7
2,430,977 + OKGIIK_11325 0.52 +0.0
2,430,977 + OKGIIK_11325 0.52 -0.0
2,430,977 + OKGIIK_11325 0.52 -0.5
2,430,977 + OKGIIK_11325 0.52 -0.5
2,430,977 + OKGIIK_11325 0.52 -0.2
2,430,977 + OKGIIK_11325 0.52 +1.9
2,430,977 + OKGIIK_11325 0.52 -2.1
2,430,977 + OKGIIK_11325 0.52 +1.3
2,430,977 + OKGIIK_11325 0.52 -1.6
2,430,978 - OKGIIK_11325 0.52 -1.2
2,430,978 - OKGIIK_11325 0.52 -0.0
2,430,978 - OKGIIK_11325 0.52 -1.2
2,430,978 - OKGIIK_11325 0.52 +0.0
2,430,978 - OKGIIK_11325 0.52 +0.2
2,430,978 - OKGIIK_11325 0.52 -0.2
2,430,978 - OKGIIK_11325 0.52 -1.4
2,430,978 - OKGIIK_11325 0.52 -0.7
2,430,978 - OKGIIK_11325 0.52 -0.0
2,430,978 - OKGIIK_11325 0.52 -0.6
2,430,978 - OKGIIK_11325 0.52 +0.7
2,430,978 - OKGIIK_11325 0.52 -1.9
2,430,978 - OKGIIK_11325 0.52 +0.3
2,430,978 - OKGIIK_11325 0.52 +0.2
2,430,978 - OKGIIK_11325 0.52 -0.4
2,430,978 - OKGIIK_11325 0.52 +1.3
2,430,978 - OKGIIK_11325 0.52 -1.2
2,430,978 - OKGIIK_11325 0.52 +0.2
2,430,978 - OKGIIK_11325 0.52 +0.7
2,430,978 - OKGIIK_11325 0.52 +0.3
2,430,982 - OKGIIK_11325 0.52 -1.6
2,431,008 + OKGIIK_11325 0.54 -0.2
2,431,009 - OKGIIK_11325 0.54 +1.3
2,431,022 + OKGIIK_11325 0.55 +1.0
2,431,023 - OKGIIK_11325 0.55 +0.4
2,431,186 - OKGIIK_11325 0.68 -0.4
2,431,251 - OKGIIK_11325 0.73 +0.4
2,431,313 + OKGIIK_11325 0.77 +0.6
2,431,313 + OKGIIK_11325 0.77 +0.6
2,431,313 + OKGIIK_11325 0.77 -1.3
2,431,313 + OKGIIK_11325 0.77 +0.6
2,431,314 - OKGIIK_11325 0.77 +0.4
2,431,314 - OKGIIK_11325 0.77 -0.2
2,431,314 - OKGIIK_11325 0.77 +1.6
2,431,370 + OKGIIK_11325 0.82 -1.2
2,431,370 + OKGIIK_11325 0.82 -0.4
2,431,370 + OKGIIK_11325 0.82 -0.4
2,431,370 + OKGIIK_11325 0.82 -0.2
2,431,371 - OKGIIK_11325 0.82 -0.4
2,431,371 - OKGIIK_11325 0.82 +0.3
2,431,496 + -0.7
2,431,497 - -0.1
2,431,497 - +0.9
2,431,497 - +0.1
2,431,497 - -0.4
2,431,595 + -0.3
2,431,595 + +0.2
2,431,595 + -0.4
2,431,595 + +0.6
2,431,595 + -0.2
2,431,595 + +0.9
2,431,595 + +0.2
2,431,595 + -0.5
2,431,596 - -3.0
2,431,596 - +0.2
2,431,596 - -0.7
2,431,596 - -0.0
2,431,596 - +1.6
2,431,596 - -1.4
2,431,596 - -0.0
2,431,596 - +0.3
2,431,596 - -0.0
2,431,598 + +0.2
2,431,598 + -1.7
2,431,598 + +0.2
2,431,598 + +1.3
2,431,599 - -0.3
2,431,638 + -0.2
2,432,020 + lolD OKGIIK_11330 0.43 -0.0
2,432,248 + lolD OKGIIK_11330 0.74 +0.9
2,432,248 + lolD OKGIIK_11330 0.74 -1.7
2,432,248 + lolD OKGIIK_11330 0.74 -0.4
2,432,248 + lolD OKGIIK_11330 0.74 -1.2
2,432,249 - lolD OKGIIK_11330 0.75 -1.2
2,432,249 - lolD OKGIIK_11330 0.75 -2.3
2,432,377 + -2.2
2,432,377 + -0.5
2,432,377 + -1.2
2,432,377 + +0.5
2,432,377 + -0.7
2,432,378 - -0.7
2,432,378 - -0.4
2,432,402 - +0.4
2,432,555 + -0.5
2,432,760 + OKGIIK_11335 0.13 +0.6
2,432,761 - OKGIIK_11335 0.13 +1.1
2,432,761 - OKGIIK_11335 0.13 -1.2
2,432,761 - OKGIIK_11335 0.13 +1.4
2,432,766 + OKGIIK_11335 0.13 -0.0
2,432,766 + OKGIIK_11335 0.13 +0.6
2,432,766 + OKGIIK_11335 0.13 -0.1
2,432,766 + OKGIIK_11335 0.13 -0.4
2,432,766 + OKGIIK_11335 0.13 -1.5
2,432,766 + OKGIIK_11335 0.13 +1.0
2,432,767 - OKGIIK_11335 0.13 -0.6
2,432,767 - OKGIIK_11335 0.13 +0.8
2,432,767 - OKGIIK_11335 0.13 -1.2
2,432,767 - OKGIIK_11335 0.13 -1.4
2,433,415 - OKGIIK_11335 0.64 +1.1
2,433,415 - OKGIIK_11335 0.64 +0.1

Or see this region's nucleotide sequence