Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_10170

Experiment: no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntuppS and OKGIIK_10165 are separated by 8 nucleotidesOKGIIK_10165 and dxr are separated by 2 nucleotidesdxr and rseP are separated by 36 nucleotides OKGIIK_10160: uppS - polyprenyl diphosphate synthase, at 2,190,341 to 2,191,081 uppS OKGIIK_10165: OKGIIK_10165 - Phosphatidate cytidylyltransferase, at 2,191,090 to 2,191,908 _10165 OKGIIK_10170: dxr - 1-deoxy-D-xylulose-5-phosphate reductoisomerase, at 2,191,911 to 2,193,086 dxr OKGIIK_10175: rseP - RIP metalloprotease RseP, at 2,193,123 to 2,194,469 rseP Position (kb) 2191 2192 2193 2194Strain fitness (log2 ratio) -2 -1 0 1 2at 2193.087 kb on + strandat 2193.087 kb on + strandat 2193.087 kb on + strandat 2193.087 kb on + strandat 2193.087 kb on + strandat 2193.087 kb on + strandat 2193.087 kb on + strandat 2193.088 kb on - strandat 2193.088 kb on - strandat 2193.088 kb on - strandat 2193.088 kb on - strandat 2193.088 kb on - strandat 2193.088 kb on - strandat 2193.088 kb on - strandat 2193.117 kb on + strandat 2193.117 kb on + strandat 2193.117 kb on + strandat 2193.117 kb on + strandat 2193.117 kb on + strandat 2193.117 kb on + strandat 2193.117 kb on + strandat 2193.117 kb on + strandat 2193.117 kb on + strandat 2193.117 kb on + strandat 2193.117 kb on + strandat 2193.117 kb on + strandat 2193.117 kb on + strandat 2193.117 kb on + strandat 2193.117 kb on + strandat 2193.117 kb on + strandat 2193.118 kb on - strandat 2193.118 kb on - strandat 2193.118 kb on - strandat 2193.118 kb on - strandat 2194.068 kb on + strand, within rseP

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Per-strain Table

Position Strand Gene LocusTag Fraction no stress control
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2,193,087 + +0.7
2,193,087 + -0.2
2,193,087 + +0.9
2,193,087 + -2.1
2,193,087 + -1.6
2,193,087 + -0.2
2,193,087 + -0.1
2,193,088 - -0.8
2,193,088 - +0.5
2,193,088 - -1.0
2,193,088 - -0.6
2,193,088 - -2.4
2,193,088 - -0.5
2,193,088 - -0.8
2,193,117 + +0.2
2,193,117 + -0.4
2,193,117 + +1.4
2,193,117 + -0.6
2,193,117 + +2.1
2,193,117 + -1.2
2,193,117 + +0.0
2,193,117 + -1.2
2,193,117 + -1.8
2,193,117 + -0.8
2,193,117 + -0.2
2,193,117 + -0.4
2,193,117 + -0.8
2,193,117 + -2.1
2,193,117 + -0.4
2,193,117 + +1.2
2,193,118 - +0.6
2,193,118 - -1.0
2,193,118 - -2.4
2,193,118 - -0.5
2,194,068 + rseP OKGIIK_10175 0.70 -1.8

Or see this region's nucleotide sequence