Experiment: no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OKGIIK_09795 and nadD are separated by 6 nucleotides nadD and holA are separated by 37 nucleotides holA and OKGIIK_09810 overlap by 1 nucleotides OKGIIK_09810 and OKGIIK_09815 are separated by 5 nucleotides
OKGIIK_09795: OKGIIK_09795 - Superfamily I DNA and RNA helicases, at 2,110,750 to 2,112,618
_09795
OKGIIK_09800: nadD - nicotinate-nucleotide adenylyltransferase, at 2,112,625 to 2,113,332
nadD
OKGIIK_09805: holA - DNA polymerase III subunit delta, at 2,113,370 to 2,114,380
holA
OKGIIK_09810: OKGIIK_09810 - LPS-assembly lipoprotein LptE, at 2,114,380 to 2,114,928
_09810
OKGIIK_09815: OKGIIK_09815 - Leucine--tRNA ligase, at 2,114,934 to 2,117,573
_09815
Position (kb)
2113
2114
2115 Strain fitness (log2 ratio)
-2
-1
0
1 at 2112.499 kb on + strand at 2112.499 kb on + strand at 2112.499 kb on + strand at 2112.499 kb on + strand at 2112.499 kb on + strand at 2112.499 kb on + strand at 2112.499 kb on + strand at 2112.499 kb on + strand at 2112.500 kb on - strand at 2112.500 kb on - strand at 2112.500 kb on - strand at 2112.626 kb on + strand at 2113.291 kb on + strand at 2113.291 kb on + strand at 2113.291 kb on + strand at 2113.291 kb on + strand at 2113.291 kb on + strand at 2113.291 kb on + strand at 2113.292 kb on - strand at 2113.292 kb on - strand at 2113.292 kb on - strand at 2113.292 kb on - strand at 2113.292 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction no stress control remove 2,112,499 + -0.2 2,112,499 + +0.0 2,112,499 + -1.4 2,112,499 + -2.3 2,112,499 + -0.4 2,112,499 + -1.1 2,112,499 + +0.5 2,112,499 + +0.0 2,112,500 - +0.9 2,112,500 - -0.8 2,112,500 - +0.1 2,112,626 + +0.3 2,113,291 + -0.7 2,113,291 + -0.9 2,113,291 + -1.6 2,113,291 + -1.5 2,113,291 + -1.3 2,113,291 + -1.5 2,113,292 - -0.8 2,113,292 - +0.0 2,113,292 - -2.1 2,113,292 - -0.2 2,113,292 - +0.0
Or see this region's nucleotide sequence