Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_09805

Experiment: no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOKGIIK_09795 and nadD are separated by 6 nucleotidesnadD and holA are separated by 37 nucleotidesholA and OKGIIK_09810 overlap by 1 nucleotidesOKGIIK_09810 and OKGIIK_09815 are separated by 5 nucleotides OKGIIK_09795: OKGIIK_09795 - Superfamily I DNA and RNA helicases, at 2,110,750 to 2,112,618 _09795 OKGIIK_09800: nadD - nicotinate-nucleotide adenylyltransferase, at 2,112,625 to 2,113,332 nadD OKGIIK_09805: holA - DNA polymerase III subunit delta, at 2,113,370 to 2,114,380 holA OKGIIK_09810: OKGIIK_09810 - LPS-assembly lipoprotein LptE, at 2,114,380 to 2,114,928 _09810 OKGIIK_09815: OKGIIK_09815 - Leucine--tRNA ligase, at 2,114,934 to 2,117,573 _09815 Position (kb) 2113 2114 2115Strain fitness (log2 ratio) -2 -1 0 1at 2112.499 kb on + strandat 2112.499 kb on + strandat 2112.499 kb on + strandat 2112.499 kb on + strandat 2112.499 kb on + strandat 2112.499 kb on + strandat 2112.499 kb on + strandat 2112.499 kb on + strandat 2112.500 kb on - strandat 2112.500 kb on - strandat 2112.500 kb on - strandat 2112.626 kb on + strandat 2113.291 kb on + strandat 2113.291 kb on + strandat 2113.291 kb on + strandat 2113.291 kb on + strandat 2113.291 kb on + strandat 2113.291 kb on + strandat 2113.292 kb on - strandat 2113.292 kb on - strandat 2113.292 kb on - strandat 2113.292 kb on - strandat 2113.292 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction no stress control
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2,112,499 + -0.2
2,112,499 + +0.0
2,112,499 + -1.4
2,112,499 + -2.3
2,112,499 + -0.4
2,112,499 + -1.1
2,112,499 + +0.5
2,112,499 + +0.0
2,112,500 - +0.9
2,112,500 - -0.8
2,112,500 - +0.1
2,112,626 + +0.3
2,113,291 + -0.7
2,113,291 + -0.9
2,113,291 + -1.6
2,113,291 + -1.5
2,113,291 + -1.3
2,113,291 + -1.5
2,113,292 - -0.8
2,113,292 - +0.0
2,113,292 - -2.1
2,113,292 - -0.2
2,113,292 - +0.0

Or see this region's nucleotide sequence